kpna1 (kpna1,LOC107591240,LOC107754951,LOC107733038)


Basic Information

Item Value
gene id kpna1
gene name kpna1,LOC107591240,LOC107754951,LOC107733038
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17316520 ~ 17329657 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938088.2
GCCTTCCGAATCACGCATGCGCAGTAGCATAATACCGGCGGACTCTTCAGATCAGTGGCCCGAACGACGAGGGGATAAACCGAGACCGTTTTTACAGGCTGCACCATGAGTCAAGGAAAGGACAATGCACGACTCCGAAGCTATAAGAACAAATCGCTTAACACAGAcgagatgaggaggaggagggaggaggaaggCCTGCAGCTACGCAAACAGAAGAAAGATGAACAGCTGTTCAAACGAAGGAATGTGGCCACAGTGGAGGAAGACTGCACACTGGAGGATGATGGGATGTCAGACAGCGGCTACCTGGAATCCCAGGCCAATAACATGGAACAAATCACGGGTGGTGTTATATCTGAGGACATGACCCAGATGATCTTCTCCAGCTCTCCAGAACAGCAGCTTATGGGAACACAACGCTTCAGAAAGCTTTTGTCTAAAgAGCCCAACCCCCCTATTGATGAAGTTATTGCCACACCTGGTGTAGTGGAGCGCTTTGTGGAGTTCCTGAAGAGGAAGGAGAACTGCACACTacagTTTGAAGCAGCGTGGGTCTTGACAAACATCGCCTCTGGCACATCTCACCAGACGCGCGTGGTGATCCAGGCTGGTGCTGTGCCCATCTTCATAGAGATGCTCAGCTCTGACTTTGAGGATGTCCAGGAGCAGGCGGTGTGGGCGTTAGGGAACATTGCAGGAGACAGCACAGAGTGCAGAGACTATGTGTTGGATTGCAACATCCTTCCCTCACTTATACAGCTCTTGACCAAACAGAATCGCTTGACTATGATGAGAAACGCAGTGTGGGCTCTGTCTAACCTGTGCAGAGGCAAGAACCCACCTCCAGATTTCACCAAGgtgtcaCCGTGCCTCAGCGTGCTCTCCTGGCTGCTCTTTGTGAATGATACAGACATTCTGGCTGATGCATGCTGGGCACTCTCCTACCTGTCTGACGGACCCAATGAAAAGATCCAAGCTGTTATAGACTCAGGCGTGTGCCGCAGACTGGTGGAGCTGCTACTacattcGGATTATAAGGTTGTCTCTCCTGCGCTTCGGGCTGTGGGGAACATCGTCACAGGAGATGACGTCCAGACACAgGTGATCCTGAACTGCTCTGCCCTTCAGAGTCTCCTTCACCTGCTATGTAGCCCTAAGGAGTCCATTAAGAAAGAAGCCTGTTGGACAATCTCCAATATTACTGCTGGTAACCGGGCACAGATACAGaTGGTGATAGACGCAGGTTTGCTTCCTCCTCTTATCACTATCCTTCAGGTGGCTGAGTTCCGGACGAGGAAGGAGGCGGCGTGGGCCATCACCAACGCCACGTCTGGGGGCTCTGCTGAGCAGATCAGGCATCTGGTGGAGCTAGGTTGCATCAAGCCTCTCTGCGACCTTCTGACCCTGATGGACTCCAAGATTGTGCAGGTGGCACTGAATGGCCTGGAGAACATCCTCAGACTGGGTGAGCTGGAGGCCAAGCGAGGAGGAGGAATCAACCCGTACTGTGCTCTCATCGAGGAAGCATACGGTCTGGATaagctggagttcctgcagggCCACGAGAACCAGGAGATCTACCAGAAGGCTTTCGACCTGATCGAGCGCTACTTCAGCCCCGAGGACGAGGATCCAGCCCTGGCCCCCGCCGTCgacctgcagcagcagcagttccTTTTCCAGCAGTGCGAGGCTCCTATGGAGGGCTTCCAGCTCTGAGTGCCAGAAAAGCCACAGCGGAGAGAGTTATTAATATCTATAATGATTAGAAAGAGTGTGACGTTGCAAGAGCCTGTGTTGCTGGTCGACTTCCTTAACCTTTACCTTTCCTGCTCCCTTCACACCTGCTGTCACTGGTTTTGAAGAACGGCTTCAGGAAAATAGAACCAGACTGATCCAAAAAATTTTCACCAGAGCAGCTCTGGAACTCTTGAAAGACTCCCATATTGCCCACGCATTAATTCCCACCACCGAACCCAAAAAAAGATCCCCCGTCCAATATAAACAAGCATCAAGACTACACGCTGCATCCGGCTGAGAGTCGATTAGAAGCTGGGTATTGACTGCTTGTACGTATGACCTTGCTGCAATACGGACGTCTTGAGACGGACGGCCTGTACGCGATTCTTTTTCATTAGTTCAGAAACACTGGACTGACCGTGTGACTGTGGGAGCGCCTGGAAGTGCgcatacaaaacaaacaaacaaacaaaaaaaaaaacagagaggcaCAACTTGGCCAGTCTGCCCTGAAGACTGAAAAGACTTCAGCACTTTTCTCTATTCATTAGACCCGGACTGCCTACAAAAAGGCAACTCTTGCTGACGGACAGAGACAGGAGTCCAGACTGTATGTGACTGACTGTGTGCCACTTAACTGAATATCGAActtatttactttcattctcATGCATTCCTACGACGACTGTGCAGGCTCCTTACATTTGCACCTTCTGGGAGTTGGAATCTCCCTGCGCACTGAGACAAAGacgaactttttttttttttttccctcgaGCCTGTGCGCCAGACTCTTCGGACTTAAGAGGACAATTCCATACGATTATCATCCTGTATCATCAGCAGCACTTTATGTTCAGGACACAAATCCTTTGGTTCGAATGGAAATCATTATTCTTTCCATGCAGTACCTGGCTCTCCGCTCCTCAGGAAATGAGACGAGAAAAGTGCGCCTCGGTGCACGCCCCAGATCGCAGGACGTTCTTTTACAGaactaaacacactaaatttTGGAGTGAAATCTCATGGCTGATGAGCTTTGCCCTTCTGAAGCTTCCTCCACTACTCGGACTCTTGATGACATTTAATGAGCTGAAATCTTAGCTTCCcagtgtgtgacacacacatacacacactttaacatgACTGATATTGCTTATCACAGACCCATGTTCAGATGACCCCCATATAGTATCATCATTAACTAGAGcgacatgagaaagaaaaaaaacaaaacatttcttcatGTCTCATTTTGGGGGTGGAATCTGTTAGTACCGACTGTGCCATAATCCTTATGTGAAATTAAGATTTACAACCCAGCAGCAATTTAAGTAAGGCATAACCATGCAGAAATGAATCCAAATTGAGCTTGAAGCATACTGGTGATTTTGTTTGCTCAAACGCTGCAAGATTGTttactagattttttttttttttttttaaatgtcagattCTCCCATTGAGAGATGACCAGCTCTTCATTTTCAATACTGCTGTTGTATTGAGATTGTGTAACTGTTCTCTGTTAAGCCATTTGCATAAATGCTGTTTCATGAGTTCCCGTGGCCATGCTCTTTATGCATTTCTGCACATCTTGGGTCTCGGTGAGTAACACGGTAAATAGTTTCACATGTAGCCTAATAAGCTGTTAATGATCTGACTGATCAGAATGCAGATGTTCATATAACACACCTAAAATGTGAATAGAGTGGAACCTGAATGAAACTGAAACAGGTAGGTAATGTTTGAATTCGATTACTTTCTACAGTCTGAGCTGTTGTTTATATTCTGCATGTAACACTATTGCAAGCTGGGATGGAAGGCATCCAGCTAAGATTTTAAAGCAGAATGATGTTAGACACTAA

Function

symbol description
kpna1 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in NLS-bearing protein import into nucleus and postsynapse to nucleus signaling pathway. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in cytoplasm. Predicted to be active in nucleoplasm. Orthologous to human KPNA1 (karyopherin subunit alpha 1).

NR:

description
PREDICTED: importin subunit alpha-5

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K23940 KPNA1; importin subunit alpha-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938088.2 True 3611 mRNA 0.48 14 17316520 17329657

Neighbor

gene id symbol gene type direction distance location
ccdc58 ccdc58,LOC107733097,LOC107701664 coding downstream 6599 17305155 ~ 17309921 (-)
si:ch211-161h7.5 LOC108256129 coding downstream 34897 17277404 ~ 17281623 (-)
si:ch211-161h7.4 LOC108256371 coding downstream 40392 17266256 ~ 17276128 (-)
nktr nktr,LOC107670423 coding downstream 155313 17142461 ~ 17161207 (-)
ctdspla ctdspl,ctdspla,LOC107701658,LOC107584947 coding downstream 242878 17030860 ~ 17073642 (-)
qtrt2 qtrt2 coding upstream 34984 17364641 ~ 17378007 (-)
zdhhc23b zdhhc23 coding upstream 60998 17390655 ~ 17397944 (-)
gramd1c gramd1c coding upstream 70703 17400360 ~ 17415956 (-)
pdx1 pdx1,LOC107580123 coding upstream 105416 17435073 ~ 17440510 (-)
si:ch211-140b10.6 polr1d coding upstream 116861 17446518 ~ 17450424 (-)
G333525 NA non-coding downstream 14524 17285753 ~ 17301996 (-)
G333527 NA non-coding downstream 18074 17293375 ~ 17298446 (-)
G333470 NA non-coding downstream 230316 17085883 ~ 17086204 (-)
G333454 NA non-coding downstream 279008 17037167 ~ 17037512 (-)
G333452 NA non-coding downstream 285823 17030465 ~ 17030697 (-)
G333649 NA non-coding upstream 48639 17378296 ~ 17378572 (-)
G333650 ccdc191 non-coding upstream 51198 17380855 ~ 17381236 (-)
G333652 NA non-coding upstream 54085 17383742 ~ 17384023 (-)
G333653 ccdc191 non-coding upstream 55622 17385279 ~ 17385646 (-)
G333656 NA non-coding upstream 59797 17389454 ~ 17389741 (-)
vipr1b vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 other downstream 77404 17185524 ~ 17239116 (-)
zbtb47b zbtb47,znf652,LOC108256615 other downstream 176835 17116098 ~ 17139685 (-)
myd88 myd88 other downstream 427096 16885151 ~ 16889424 (-)
oxsr1b oxsr1,oxsr1b other downstream 436636 16829790 ~ 16879884 (-)
cpa6 cpa6,LOC106579545 other downstream 1003604 16281271 ~ 16312916 (-)
LOC113541127 LOC108256571 other upstream 577927 17907584 ~ 17908812 (-)
c22h11orf65 c23h11orf65 other upstream 579667 17909324 ~ 17916556 (-)
zmp:0000000991 NA other upstream 586427 17916084 ~ 17931814 (-)
mybl1 mybl1,LOC107663687,LOC107590196 other upstream 1107857 18437514 ~ 18520205 (-)
pkia pkia,LOC107666628,LOC107705234 other upstream 1675841 19005498 ~ 19015855 (-)

Expression


Co-expression Network