rpl22l1 (rpl22l1,LOC102776745)


Basic Information

Item Value
gene id rpl22l1
gene name rpl22l1,LOC102776745
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 20364456 ~ 20366641 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938094.2
GTCTCTGTCAGCGAAAGCGCATGCGCATTGACGTCACTTCCTTTTTAACTCGCTCTCCTCAACATGGCGCCGAAGAGACAGCAGCCTGCAGGGAAGAAGAGCAGGAAAGGAGCTGCGTGGAAGTTCACGCTGGACTGCACGCACCCCGTGGAGGACGGCATCCTCGACTCGGCCAACTTTGAGACGTTCCTCAGAGAGAAGGTGAAGGTTAACGGTAAAACTGGAAACCTGGGTAGCGTGGTGCAGATCGCTCGGCAGAGGAACAAGATCAGCGTCTCATCAGAAAAACAGTTCTCCAAGAGGTATCTGAAATATCTCACGAAGAAATACCTGAAGAAGAATAACCTGCGAGACTGGCTGCGTGTGGTGGCGTCCGATAAAGAGACCTACGAGCTCAGATACTTCCAGATCAGCCAGGACGACGAGTCCGAGACGGACGAGTGAAGCGAGAGGAGGATGATCCTCATCTCATCCTTTATATCGAGTTCGATgattatttgttaataaatggACGATTTACACTAAA

Function

symbol description
rpl22l1 Enables RNA binding activity. Acts upstream of or within definitive hemopoiesis. Predicted to be located in ribosome. Is expressed in intermediate cell mass of mesoderm. Orthologous to human RPL22L1 (ribosomal protein L22 like 1).

NR:

description
PREDICTED: 60S ribosomal protein L22-like 1

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02891 RP-L22e, RPL22; large subunit ribosomal protein L22e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938094.2 True 526 mRNA 0.51 4 20364456 20366641

Neighbor

gene id symbol gene type direction distance location
LOC113541302 NA coding downstream 720 20361593 ~ 20363736 (-)
slc7a14b slc7a14,slc7a14b,LOC107586809,LOC107721826,LOC107685444 coding downstream 8437 20340889 ~ 20356019 (-)
skilb LOC108256440 coding downstream 55414 20295943 ~ 20309042 (-)
lrrc31 lrrc31 coding downstream 71402 20281611 ~ 20293054 (-)
apodb LOC108256634,LOC103031628 coding downstream 112455 20249457 ~ 20252001 (-)
eif5a eif5a2,eif5a,LOC107590245,LOC107685442,LOC107586748 coding upstream 2510 20369151 ~ 20375049 (-)
tnikb tnik,tnikb,LOC103024681,LOC107685441,LOC106578374,LOC108440401,LOC107721871,LOC107725857,LOC103377179 coding upstream 10038 20376679 ~ 20437831 (-)
pld1b pld1b,LOC108256388,LOC108413108,LOC107663701,LOC107685440,LOC107586751,LOC107721916 coding upstream 78598 20445239 ~ 20488144 (-)
zmynd11 zmynd11 coding upstream 359892 20726533 ~ 20740879 (-)
LOC117595766 NA coding upstream 644857 21011498 ~ 21013434 (-)
G335498 NA non-coding downstream 170075 20121516 ~ 20194381 (-)
LOC113541188 NA non-coding downstream 191532 20167317 ~ 20172924 (-)
G335460 NA non-coding downstream 303297 20060024 ~ 20061159 (-)
G335404 NA non-coding downstream 462120 19879892 ~ 19902336 (-)
G335232 NA non-coding downstream 575398 19788583 ~ 19789058 (-)
G335800 NA non-coding upstream 293987 20660628 ~ 20661829 (-)
G335831 NA non-coding upstream 377918 20744559 ~ 20745016 (-)
G335859 NA non-coding upstream 556266 20922907 ~ 21002111 (-)
G335868 NA non-coding upstream 650305 21016946 ~ 21018572 (-)
G335865 NA non-coding upstream 656316 21022957 ~ 21024079 (-)
otos otos,LOC108440409 other downstream 115995 20246451 ~ 20248461 (-)
cops9 NA other downstream 118145 20242488 ~ 20246311 (-)
G335523 NA other downstream 182044 20179412 ~ 20182412 (-)
cnksr2a cnksr2,cnksr2a other downstream 396652 19889039 ~ 19967804 (-)
G335165 amer2 other downstream 760763 19600727 ~ 19603693 (-)
fndc3bb fndc3b,fndc3bb,LOC108434945 other upstream 130447 20497088 ~ 20557959 (-)
stag1b stag1,stag1b,LOC108434968,LOC107590250 other upstream 193449 20560090 ~ 20591616 (-)
G335788 larp4b other upstream 243591 20610232 ~ 20612309 (-)

Expression


Co-expression Network