pign (pign,LOC107663715,LOC107721925,LOC107666639,LOC107705240)


Basic Information

Item Value
gene id pign
gene name pign,LOC107663715,LOC107721925,LOC107666639,LOC107705240
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18503818 ~ 18523294 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938095.2
TCATCCAGGAAGTGGATTCACACAAGCTGTTCTAGATTGTTAGGCAAAATAAAGTCATTATTAAAGTTCATTTCGCCAGTTAATTATTGCTCATTGTTAGTGTGACACTGTGTGGATTTGTGGTGGGAAGAGTTGAAAAGTCGTACAAGCGACTGTTATGCTGAAACAAGCATGAAACAAACATTACGCAATATCGCAAAGGATCAGCTCGATAGACAGGATGAACATGATCACATTCTTTATCGTGGGGCTTCTGGTCCACGTGGTCTTCTTCATCTCCATATTTGACATCTACTTCACGTCACCCTTGGTTCATGGGATGAGTCCTCAGCGTGTGCCCTTACCGTCGCCTGCCAAGCGCCTGGTGCTCTTCGTGGCAGATGGACTGAGAGCAGACAGCATGTTTAAGCCCGACACCAACGGCACCATCAGGATGCCCTATTTAAGGAGTGTAATTCAGGAGAGCGGTTCATGGGGAGtgtcacacacacgtgtacCTACAGAATCCCGTCCTGGACATGTGGCGCTTATAGCAGGCTTTTATGAGGATGTCAGCGCTGTGGCTAAAGGCTGGAAGGAGAATCCAGTGGAGTTTGACTCTGTGTTTAATGAGAGCAGGTACACATGGTGCTGGGGAAGTCCTGACATCCTGCCCATGTTCGCTAAAGGTGCGAGTGGAGATCATGTGTACACTCACACTTATCCTGCTGCGATGGAGGACTTCGCTTCAAAGGACGCCTCCAAACTAGATACCTGGGTGTTTGATCAAGTGAAGGAGTTCCTCAGATCAGCAAAAGAGAATCAAACTCTCATGTCTCAATTGCATGAAgataaaattgtgtttttcctTCATCTTCTGGGGATTGACACCAACGGACACGCCCACCGGCCCATGTCAAAGGAGTATCTGGATAACATTGGCCTGGTTGACAGTGGAGTTGCCGAGATTGTTACTGTGTTGGAGGAGTTCTTTGGGAACGATGGCAGAACAGCGTATGTTTTCACAGCTGATCACGGCATGACAAACTGGGGGTCTCATGGAGCCAGTCATCCATCAGAAACCCTCACCCCCTTGGTGGTGTGGGGGGCCGGAGTTCAGAGAGCTCAGAGAACCACCACTTTTCAGAATTATGGTGATGACTACATCAGAGAATGGGGGCTGGAGACGTACAGGAGAATCGATGTCAACCAGGCTGATATAGCACCGCTCATGTCATCTCTCATCGGGGTTCCCATTCCACTCAACTCTGTGGGGGTCCTGCCGCTCAAGTACCTCAATAACAGCCAGCATTTCAAAGCTGAAAGCATGTATGCAAATGCCGTTCAAATCCTGGAGCAATTCAAGgtgaAAATGACGCAGAAAAAGGAGACCACTTTGTCGTTTCTCTTCACGCCGTACCAACCTCTGACTGATTCTAAAATGACTGAGTTTGTGAGTCACACAAGATCACTAATCCAGAAAGGGCACTTTGATGAAGCTATTCAACAGTGTGAGGTTCTGATAGATCAGGCCATGGAGGGATTGTCCTACTATCACACCTACGACCGCCTTTTCCTGGGCTGCAGCGTTGTCTTAGGTTTCATCGGATGGACGTCTTACGTGGTTTTGGTTATCCTGAAGACTCACGCCAGCCTGCGCAAACCACCTGCAAGCAGAGACAAGACAGCAGGGAGACATCTGGGTCGGGTTTTCGTGTGTGTGGGCCTGCTGGTGTCCgtctttctgtttcttcagGCCAGTTCCTTCACCTACTACATCTACTGCCTGTTGCCTGTCCCCGTGTGGTACGGAGTCCTAAAAGAATTTGGGATCCTTGTTGATCTTATGAGATCAGTTCCTTCCCTGAACCTGAGCAAATGCTTTGGATATTTTGTTCTAGTTACATTTGGGATAGAGCTACTGGTTGTGAGTTTTTTCTATCGGGCTGTGTTGACCCTGGGACTGATAGTGCTGGCACTGTGGCCTGTTGTCTCAGGGCTTTATAGAAAAACCAAGTCCAGGTCAGTGAGCTGGGTGTTGAGCTGCTTGTGTCTGGCAGTGTTTCCTCTGTTGCCTGTTGTCGGACGAGAACCCAACACCAACTATGTGTTATGTGCTGGAGCTCTAATGCTGTTCACCTCGTTCCTCTACATTTTATCACGTAGACACGCAGGCCTGCATACGAGAGATCGTTGGCTGTTTATTGGccagATGCTGCAGGTGGCGCTGTGCGCATACGTGCCTTCCAGCACACACTCCAGTCTGCAACTCAAACAAGGCCTACCGCTCTTCAATCAGCTCATCAGCTGGACCACTCTGGTCTCATCATTTTTTGTGCCGCTGCTGAGTTCTACGCGACTCTTCCACAGGCTGCTGAGTATTCTCATGTCCCTCATCTGTGTGTACCTTCTCCTCAGCACTGGGTACGAGGCCCTGTTTCCTCCTGTACTGTCATGGCTGATGTTTGTGTGGATCCATATGGAGCAGGAAGCCATAGACACACACGGAATGTCCAACAGGAATGAGCTTTCACACATTGATTTTGCTGAAAATATCGACTTATCCAGAATCAGGCAGCTGAGTTTGGACGATATCAGAAGATCGCACTTCTTTGTATTCTTCATAATCATTGCATTCTTTGGCACAGGAAACATTGCTTCCATCAACAGtTTTGACCCAGCCTCTGTCTACTGCTTTCTAACGGTCTTTAATCCTTTCATCATGGGTGGCCTTTTAATGTGGAAGGTCCTGATTCCATTCATAATTGTAATGTGCACATTCGAAAGTGTTCAAGTGTCAACACGGCTTTCGTCACGAAGCCTTTTCCTCATTGTGCTGGTCATCTCTGATTTGATGGCACTGcacttcttcttcttggtgAAAGACTATGGAAGCTGGCTTGATATTGGTACAAGCATTAGTCACTACGTCATTGTCATGTCCATGACCATCTTCCTGATGCTGCTGAGTGTGATGACACACATCTTGACCTCAAATAAACTCCACATTGGACAAAAAGTGAAGGTGCACTTTAAGTGATCTGCATTAGACAGTGTTGGAGAA

Function

symbol description
pign Predicted to enable mannose-ethanolamine phosphotransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in multiple congenital anomalies-hypotonia-seizures syndrome 1. Orthologous to human PIGN (phosphatidylinositol glycan anchor biosynthesis class N).

NR:

description
GPI ethanolamine phosphate transferase 1

GO: NA

KEGG:

id description
K05285 PIGN; GPI ethanolamine phosphate transferase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938095.2 True 3043 mRNA 0.48 29 18503818 18523294

Neighbor

gene id symbol gene type direction distance location
sgk3 sgk3,LOC107721888,LOC107663688,LOC107666631,LOC107705243,LOC107590197 coding upstream 36573 18453107 ~ 18467245 (+)
si:dkey-97a13.12 NA coding upstream 71668 18396227 ~ 18432150 (+)
rrs1 rrs1,LOC107590198,LOC107721889 coding upstream 80258 18420986 ~ 18423560 (+)
trim55b trim55,LOC107590338,LOC107663638 coding upstream 112953 18380291 ~ 18390865 (+)
trnaa-agc_16 NA coding upstream 123804 18379942 ~ 18380014 (+)
hnf4g hnf4g,LOC107586790,LOC107666612 coding downstream 7181 18530475 ~ 18542760 (+)
zfhx4 zfhx4,LOC107666618,LOC107721891,LOC107705239,LOC107590192 coding downstream 209666 18732960 ~ 18788585 (+)
LOC113541280 LOC108256606 coding downstream 292940 18816234 ~ 18931272 (+)
zc2hc1a zc2hc1a coding downstream 497712 19021006 ~ 19033661 (+)
ctnnd2a ctnnd2a,LOC108256437,LOC108438556,LOC107716425 coding downstream 537595 19060889 ~ 19328125 (+)
G334211 mybl1 non-coding upstream 63162 18440255 ~ 18440656 (+)
G334210 NA non-coding upstream 64372 18439149 ~ 18439446 (+)
G334209 NA non-coding upstream 66412 18435721 ~ 18437406 (+)
G334120 NA non-coding upstream 178933 18296643 ~ 18324885 (+)
G334077 NA non-coding upstream 300138 18203063 ~ 18203680 (+)
LOC113541128 NA non-coding downstream 20068 18543362 ~ 18681823 (+)
G334345 NA non-coding downstream 155581 18678875 ~ 18738178 (+)
G334371 NA non-coding downstream 165465 18688759 ~ 18726730 (+)
LOC117595807 NA non-coding downstream 181998 18705292 ~ 18706093 (+)
G334386 NA non-coding downstream 237795 18761089 ~ 18854003 (+)
mcmdc2 mcmdc2 other upstream 17809 18467878 ~ 18486009 (+)
mtfr1 mtfr1 other upstream 180523 18315354 ~ 18323295 (+)
G333943 LOC108256468 other upstream 510804 17986762 ~ 17993014 (+)
pan3 pan3,LOC107705213 other upstream 707297 17761531 ~ 17796521 (+)
rnf6 rnf6,LOC106590444 other upstream 961431 17535944 ~ 17542387 (+)
G334373 NA other downstream 169855 18693149 ~ 18717953 (+)
LOC117595806 zfhx4,LOC107590192 other downstream 188754 18712048 ~ 18747477 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other downstream 794563 19317857 ~ 19427936 (+)
G334838 NA other downstream 1052817 19576111 ~ 19577073 (+)
cip2a kiaa1524 other downstream 1113574 19636868 ~ 19703804 (+)

Expression


Co-expression Network