LOC113541231 (cntnap2,cntnap2a,LOC108256453,LOC108256478,LOC108256479)


Basic Information

Item Value
gene id LOC113541231
gene name cntnap2,cntnap2a,LOC108256453,LOC108256478,LOC108256479
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 12766560 ~ 13015109 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938097.2
AGGCTGGAGCTCTGAGGAAAGACTAGTCAATGTAAGTTTGAGAGCCGGGCAGGAAGCGCATGGCTGGACATTCACTCCGCTATGGATTGAGCATTGAACTGATATTGTTTTCGGTCAGACGGAGCGCGAGCTGATGCGCTGATCCGCAGCGGTTTGTTGTCCGCGGTGCAAACCCCGATCCTGTTTTCTGACTCGGGCCAGGAGAAAACATCAGTACCAGCACCAGGTGCGTGTGTCAGCAGGGGTAAGgagtgtgtagaagtgtgtggaCTGTGTAGGAGAAGGCTGGGGAGGATGAGGATGGTGCGCGCGGGCTTCATCCCGCTCCTGTGGATCTTCAGAATCAGCATCATCTCGCACGCGGCTCCTTCATCCGCCTACAAGTGTGATGAAGCACTAGCCACACCCCTTTCCCACAGTGCCTTCAGTGGTTCATCTGTCTTCACCACTGGATATGCTGCTGGATATGCCAAACTGAACAGAAGAGGAGGTGCTGGAGGCTGGTCGCCTCTCGACACTGATCATTATCCATGGCTGCAGGTGGACCTCGGCAGCAGGAAGCTGGTGACGGCCATCGCCACTCAGGGCCGATACAGCAGCTCAGACTGGACGACACACTACCGGCTACTTTACAGTGACATGGGCAGGAACTGGAAACCCTACCATCAGGACGGAAACATCTGGGTGTTTACAGGAAACTCCAACACAGAGAGTGTAGTGCGTCATGATCTTCAGCACAGCATCGTGGCCCGATATCTACGCTTCATCCCTCTGAGCTGGAGTGAAGAGGGTCAGATAGGTCTGCGGATGGAAGTCTATGGCTGCTCATATTGGGCAGATGTGATTCACTTTGATGGCCAAGGCGTAATCTCCTACCGATTcaagatgaagaagatgaagattCTGAAGGATGTAATAGCACTAAAATTTAAGACGGGAGAAAGCGATGGGGTGATTTTGCATGGCGAGGGTCAACAAGGAGATTACATCACACTGGAGCTGAGGAAAGGAAGACTGCTGCTCCAGATAAACCTTGGCAGCAACCAGTACGGTTCCATCCTGGGTCACACGTCGGTGAGCAGCGGCAGCTTGCTGGATGATCATCACTGGCACTCGGTCATGATTGAGCGCTACCGGAGAAATGTCAACTTTACCCTGGATCAGCACACTCGGCACTTTCGTACCAATGGCGAGTTCGACCACCTCGACCTTGACTATGAGTTGAGTTTTGGAGGAATGCCCTATTCAGGCAAGCCTATCTCAGGAGGCCGGAGAAATTTCATAGGCTGCATGGAGAGCATCAACTACAATGGAGAAAATATCACTGACCTGGCCAGAAGAAAGAAACTGGATACCTCTAGCTTTCGCAACCTGACATTTTCCTGCGTGGACTCTCACACCTTCCCAGTTTTCTTCAATGCCACAAGTTTCCTGCAGTTACCAGGCAGAAGGGAGCACAGCATGGTGTCTGTAAGCTTCCAGTTTCGCACTTGGAATGCTAACGGACTGCTCCTGTTCAGCGAACTGGCTGATGGCATGTTGGAGCTTGTGCTTAAAGATGGCAAAGTCATGGTGCACATCAGTGTTTTGCAGCTGAAAAGCTCACGTGTTGACATGGCATCAGGTTCAGGGCTGAACGATGGAGAATGGCATGATGTTCGCTTTTTGGCCAAAGAGAACTTTGCCATGCTGACCATAGATGGAGATGAATCCTCAGCTGTGAGGAACAATGCAGTCATTCACATTACCGCTGGAGGAATGTATCATTTTGGAGGTTATTTCCTGAGGACACTGGTGTCTCCCTCGCAGCGCTCGTTTCAGGGCTGCATGCAGCTCATCCAGGTGGATGATCAGCTGGTCGACATATCAGCAGTGGAGCGGGGCATGATAGGAGCTTTTGAGAATGTCAGTCTGGATATGTGTGCCATTATAGACAGATGTTTGCCCAATCACTGTGAGCATGGAGGAAGGTGCTCTCAGACCTGGGATaccttcagctgctcctgtgATGGCATTGGGTATGCTGGAGCTACCTGTCACTCCTCAATCTATGAGCAGTCATGTGAGGCTTATAAGCACCTGGGGAAAACTTCTGATGTCTACTGGATCGATCCTGATGGCAGTGGCCCTCTTGAGCCATTCAGAGTCATCTGCAACATGACAGAGGACAAGGTGTGGACGATGGTGGTGAACAGCCTGCCAGCTCAGACGACTGTATCAGGTTCAAGCAGGGAGAGACGCACAGTGCTGCATCTAAACTACAGTGCCACTATAGAGCAGATCAGCGCCATTACAGATGCTGCAGAGCACTGCGAGCAACACATTGCCTACACCTGCCGCTCATCACGTCTACTCAACACACCCGatGGCAGTCCGTACACATGGTGGGTTGGCAGAGGTAATGAAAAGCACTTCTACTGGGGTGGTTCTGCACCGGGAATCAAGAAGTGTGCCTGTGGAATTGAACGCAATTGCACAGACCCCAAATACCACTGCAACTGTGATGCTAATCACAAACAGTGGCGAGAGGACTCAGGGCTTCTGGTCTATAAGGACCACTTACCTGTGAGTCAGGTGGCTGTAGGGGACACAAATCGAGCCGGATCAGAGGCCAAGCTCACTGTGGGAGCTCTGCAGTGTCATGGAGACCGTAATTACTGGAATGCAGCGTCCTTCACCACACCATCCTCCTACCTGCATTTCTCCACTTTCCAAGGGGAAACGAGTGCTGATATTTCCTTCTACTTTAAGACCTCTGCACCTCATGGAGTTTTCCTGGAGAACTTGGGCAACACAGATTTTATCCGCCTGGAGCTAAAATCACCAACTGTGGTTTCCTTTTCCTTTGATGTCGGGAATGGGCCTGTAGAGCTGAAGGTCCGTTCACCAACACCGCTAAACGATGACCAATGGCATCGCATCAGCGCAGAGAGGAATGTTAAAGAGGCTGTGCTGCAACTGGATCAGCAATACAGGGAAGTTCGAGCTGCACCTGCTCAAGGACACACACGCCTGGAGCTCTACAGCCAGCTGTATGtggGTGCAGCAGGAGGGCAGAGAGGCTTCCTCGGATGTATCCGCTCCCTAAAGATGAACGGTGTCACCCTTGACCTGGAGGACAGAGCAAAGGTCACGCCCGGAGTCAAACCTGGATGTTCAGGTCACTGCACTAGTTTTGGGATGTACTGCCGCAGTGGAGGAAAGTGTGTGGAGAAATACAACGGCTACTCATGTGACTGCAGTGGTACAGCTTACGAAGGACCCTTCTGTACTAAAGATGTAGGAGCTTTCTTTGAGGCAGGAACTCTGGTCCGCTATAACCTTGTGCCCGAGTTGATGGCCGCTACATCGAGCATGGACGGGAAGGATTTGAGTCGATCACAGCTGACAGAGAAGAACCTGACCCAAGAGGTTGTGACCTTCAGTTTCAGCACATCCAGCACTCCCAGCATCCTCCTGTACATCAGCTCATGGAGCCGTGACTACATGGCAGTGGTACTGAGGCACAATGGTACACTGCAGCTGCGTTATAACCTCGGAGGTCTGCAGGAGCCCTTCACCATTGATCTTGACCAACGCAATTTAGCCAACGGACAGCCACATAATGTCAACCTAActcggacagagagagaaatacacgTCCAGTTGGATCACTATCCTTCAGTCAGCTACACCCTGCCTGAAGCATCTGACACTCAGTTCACCCTGGTGAAAACCCTCTTCCTAGGAAAGGTCTATGAAACTGGTCCCATTGACCCAGTGCTGATAGAGAAGTATAACACCCCTGGCTTTGTAGGCTGCCTATCCCGAGTGCAGTTTAACAGCATCGCTCCTCTGAAAGCAGCTCTTCGCCCCCAGCTCTCTCTGCCAGTGTCACACCAAGGCAAACTGGTTGAATCCAACTGTGGCTCATCACCTCTCACCATTTCCCCAATGTCAGCTGCCACCGACCCCTGGCACCTGGATGGAGGTGCTGACTTCCCGTTCAATGAAGAGATAGTCATACCAGACGAGGTGAACAGGAATTCAGCAGTAATCGGAGGCATCATTGCTGTGGTCATCTTCACCATCCTGTGCATTCTGTTGTTCCTGATACGCTACATGTTCCGGCACAAGGGGACGTATCACACCAACGAGTCCAAAGAGGCCAAACGCTCCGAATCAGCTGACACGGCCATCATCGCCTCCGAGCCCAATTTTACAGAAACCATTGATGAAAACAAAAAGGAGTGGTTTATCTAAGACATATTTGCTGGGGAgcgtacacacactctcactaaaCATCAAGAAAGTGGGAGCGATCTCAGAACCGAGCTGAGAACCTGAACTGTACGCACAGGATGGCTCGTCTCTGTTGTGGTTGGACGATTGAGAAgtcttttataaattaattgtaAATTGTGTGAACAAAACAAGACACTGATTTGCCGTTTTGATTTTGTCAAAAGTTTGGTTGTTAttcatataaatcatttttatttatttccatctttaaattttaaacaattttttgtaAATGCCTCAAAGTGGGAGGGCTGGGATAATTCCCTAATGTTAAGatgattaatgtaattattaatgtattaatagtattaatgTAACtattttacattcatgaaaGTAGCTTTCTACAGGTGGCCCTCACAAACTCTAAATGTCACAATTATGTCTAATAAATTACTAGATATATTTGAAGTAAATTATAGGATTAAATCAACCCCCATTCCCAGAAGTGAAAATGCAACCTGGTTTGCCTGGAATTGCCATTGTTCATAAAAAAGTCTTGTAGATTAGGGTGGCAGAGATAATCATTGAATGAAAAttcattgttttcttttgctgGAAGCATAGTGTAGACAGGTAGAATAGACTGATAactctggcaaaaaaaaaagaggaacaaaGGCGGCACCAAGAAGCCAAGAATCAAAACCAGAGAAGCATTCAAGGAGGATGCAGCGAAAAATATTTTGATCAGGTGTGCAGCGCAAATGCTATAAGGAGGAACATGGAATTTAGCCGACATTCATTTGCAACATGTTCAGTGCCATGATTATGTCACATGTTACATACAACTTTTCCATCAGTAGCATCTGCTTGGTTGTCACGTTATAGCAAATGCATAATGGGAGGTAAGCAAATAACCATATTTTGTTAGCTGCTTATCCAGTACATTTAATCTAATGCATTGTTCAGTGAATTACAGAACTTCTGCAGAGCCACGTTTAAAAGTCTTGAGGAATGAACTCCTGCTTCAACCCCCACTTGGTTTTAACTAGAGGTGCTGTGGGAGTGGTTTAATCCCACTCATGCAGctattgtatttgtttgtgcCTGCTAGAGGTATATTCTACTGAATTTATTTGGTTAATTTAACTAGTAGCCTAGTTTAAACCACTAGAACCCTAACCAGGcagttactgaggatgaatgaacaaacacagTAAATGCATTCAGGTTTACGTTAATGAAGATGGTCGTTGATTGTCCCCTCATAGCTAACTGCTCACTCATGcctgaatgaaagaaaaacctcCTGCTCACACAACTATTTTGTTGTATATATAACATTCTGCTTAGGCCTTGAGCAAAACCCTGAACCCCCAACTGTTCATCTCTGTTTCAACATGATCACCTCAGTTTTTCCTTTGGTGTAAAGCATCAGAtcaataaatgtatattaagGTCAGTAGACAAAGAAAAAGTAAAGTAGGCATTAAGAACATCCAGTGGTGCTCTTGTACAAGGAGATCCATTAACAATCAGATCTTATTTTCTGATGGGCTGAGATTAAAGTGATGAGGCTAAAAAGGCTAAAAGGCTTCATCCACAGTGCCTTCTGCTTGAGACCTGATTCTCATTTATACACAAAAATGCCCAAGGACAGTGTGCTTTTGTATGATCTTTTTAAATCACAGTTGTAATTGAGGTTGAAACCCATCTGATGTTGATAGAATTGTATAAATCTAATGGGGCTAAAAGggaaatccatttaaaaaattttctaatagaaaatagaacaaaatgCAACTTTATAGTGTTGCCTATTTGCTAATTAATCTAATAGTGGCAACTACAGTGCTACATAACTGGCCTACACTGTTTTCACGAAATTAATGTCAATCAGTAATATAAgctacagtacacacatacacaaagagacagagagagagagctgtaacCATATTACTCGTTAATgaagataaaattaaataactacGGTCCTTACTTAAGGTCCTTACTACACGTCCTGCGTAGAGGTTGGATGAACGTCTAAAAATGTCCAATGTCCATATTTTTGTACGTAGCTATGTGAGATGTAGTTCATGTAAGACTCGTACATGACTAAACTGGCTGAATGACCTGTCACAATACGTTAATACATAAGGTACATTCAAAAATCTACAGTGTactatagctagctagctagttaagctcagtggttaaggctctggctTACTTATCAGAAGGCAGGGGGTTCAAGCCTCAGTGcctccaagctgccactgttaggcccttgagcaaagcccCTTAACCCGctctgtatcatggctgaccctgcgctctaaCACCAGCTTCCATaggtgaagaaaagaatttcatggtgctgtaatatatatgtgacaaataaaggcttttaTCTTCTTAAGaccaaaatttaaaatgaagatTCTTAAGACTCCAGTAGATTACTAAATAGGCTATAATTGTGgcaacatttacatacacagatGATAATAATTGAAAATGACAGTTGTATTTCTTGATATCTAATTTTAGGAATCTTCTCGATGGGTAGTCTAGGCTGTGGACGTTGCCATGGGATTTCACTACTGAAGGCTCACCAgctctttgtttgtttattaacacatttactTTAGCTGTGGCCTTGACAATTTTGTACAGAAAATATCCTttgtttgtgatttattttagaaaaactGGCTATTAGTGCCACTGCTGTTAAAGCCACTTGAGCACGTTGTTGTGTCTTCTTTCTGAAAATAATGGAGGAActgctaattattaagtaattatttttttctttacttaagTTGATTAACTTTCATTAATCAACTACAGAAA

Function

symbol description
cntnap2a Predicted to act upstream of or within protein localization to juxtaparanode region of axon. Predicted to be located in membrane and paranodal junction. Predicted to be integral component of membrane. Is expressed in anterior lateral line ganglion and posterior lateral line ganglion. Human ortholog(s) of this gene implicated in several diseases, including Pitt-Hopkins syndrome; autism spectrum disorder (multiple); communication disorder (multiple); cortical dysplasia-focal epilepsy syndrome; and social phobia. Orthologous to human CNTNAP2 (contactin associated protein 2).
cntnap2 Enables enzyme binding activity. Involved in several processes, including forebrain development; positive regulation of gap junction assembly; and vocal learning. Located in several cellular components, including Golgi apparatus; axolemma; and early endosome. Part of voltage-gated potassium channel complex. Implicated in several diseases, including Pitt-Hopkins syndrome; autism spectrum disorder (multiple); communication disorder (multiple); cortical dysplasia-focal epilepsy syndrome; and social phobia.

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K07380 CNTNAP2; contactin associated protein-like 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938097.2 True 7086 mRNA 0.45 24 12766560 13015109

Neighbor

gene id symbol gene type direction distance location
ccl34b.4 LOC100304628 coding upstream 53909 12710626 ~ 12712651 (+)
LOC113541349 LOC108256200 coding upstream 58557 12706939 ~ 12708003 (+)
hs6st1b hs6st1b,LOC108256600,LOC108434959,LOC107558548,LOC107697682,LOC107677314,LOC107729660,LOC107590258,LOC106579591 coding upstream 267514 12428457 ~ 12499046 (+)
bcl2a bcl2 coding upstream 532377 12181785 ~ 12234183 (+)
LOC113541340 LOC108256745,LOC108434245 coding upstream 586939 12162455 ~ 12179621 (+)
cul1b cul1,LOC107686696,LOC107595130,LOC107727219,LOC107741709,LOC107695409 coding downstream 6058 13021167 ~ 13042516 (+)
skida1 skida1 coding downstream 259551 13274660 ~ 13278025 (+)
armc3 armc3 coding downstream 307228 13322337 ~ 13334525 (+)
msrb2 msrb2,LOC107735060 coding downstream 321229 13336338 ~ 13341661 (+)
c8g NA coding downstream 328637 13343746 ~ 13350216 (+)
G331280 NA non-coding upstream 24882 12741117 ~ 12741678 (+)
G331277 NA non-coding upstream 32857 12732809 ~ 12733703 (+)
G331161 NA non-coding upstream 316213 12448762 ~ 12450347 (+)
G331003 NA non-coding upstream 493270 12211250 ~ 12273290 (+)
G330976 NA non-coding upstream 623695 12141943 ~ 12142865 (+)
G331342 NA non-coding downstream 29206 13044315 ~ 13049452 (+)
G331343 NA non-coding downstream 35933 13051042 ~ 13051859 (+)
G331344 NA non-coding downstream 39176 13054285 ~ 13054519 (+)
G331345 NA non-coding downstream 41409 13056518 ~ 13057241 (+)
G331348 NA non-coding downstream 46226 13061335 ~ 13061659 (+)
G331263 LOC108256200,LOC100304628 other upstream 53882 12706939 ~ 12712678 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 609773 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 1018001 11717415 ~ 11748559 (+)
acad11 acad11,LOC107715568,LOC104947469 other upstream 1782351 10874209 ~ 10984209 (+)
G330257 NA other upstream 1791645 10973264 ~ 10974915 (+)
G331476 NA other downstream 242785 13257894 ~ 13258416 (+)
stau2 stau2,LOC107691439 other downstream 2119244 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 2236526 15251635 ~ 15265895 (+)
G332636 NA other downstream 2551066 15566175 ~ 15566663 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 4085055 17100164 ~ 17110027 (+)

Expression


Co-expression Network