tagln3b (tagln3,tagln3b,LOC108442189,LOC107701685,LOC107705223,LOC107654214)


Basic Information

Item Value
gene id tagln3b
gene name tagln3,tagln3b,LOC108442189,LOC107701685,LOC107705223,LOC107654214
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17880010 ~ 17883333 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938100.2
GTGTCTCTAGACCTTGTTGTGACGCTTGCCTATATAACGGGGCTCGTGCCACCGGGCCGGCGTGTCCGCGCGCGCCCCACCCAGAGCTGCATGGACGCTTCATTTCCGCGTCTCCAGAGAGCGCGCGCAGGACATCAGGATTATAGCAGCAGCATCCTTCTCTTCCGcCACCGAAAGATCTGACATTTTTTCCCTGGCCGCTTTGAGACTTATCCAAAAAGCCAGTGATCATGGCAAACAGAGGCCCCAGTTACGGCCTGAGCCGGGAGGTGCAGGAGAAAATCGAACAGAAGTACGATCCTGATCTGGAGGCTCGGCTGGTGGACTGGATCGTTGCACAGTGTGGAGGAAATCTGGAAAGACCCCAAACAGGAAAGCAGAACTTCCAAAAGTGGCTGATGGACGGAACCATCCTCTGCAGACTCATTAACAGTCTGTACCCGCGAGGTAAAGAGCCCATTAAAAAGATCCAGGAGACACAGATGGCCTTTAAGCAGATGGAGAAGATCTCGCAGTTCCTCCAGGCGGCTGAGGCGTACGGAGTCATCACCACGGACATCTTTCAGACTGTAGATTTATGGGAAGGAAAGGACATGGCCGCCGTCCAGAGAACTCTAATGGCTCTGGGCAGTGTGGCACTCACCAAGGATGATGGACATTACCGTGGCAACCGGGACTGGTTCCACAGGAAGTCTCAGGGTAACCGGAGGGAATTTTCCGAAGAGCAGCTGCGCCAGGGCCAGAACCTGATCAGCCTGCAGATGGGCAGCAACCGCGGAGCGTCCCAGGCTGGCATGACAGGGTACGGCATGCACCGCCAGATCATGTAACCCAGCCTGGAGATGACCTACGACCTGCATCAGACACCCAGAAGTCCTTAATCCCTGCAGAGGAGCAACAAACATCTGGTTCAGTCATCAGTTTCATTAACGTTTTTGGTTGTGAAAATGAGGTAGAACACTTTTAATATCAgtgttcttttaaaatgtcttgAAATTCCATGtatgatattaattaataacttaTTATAACTTATTAGCATGACtactgtttcattttatttttatttactataatatatatttatcagTATCCAtaatcacaaaaacattttaacataaataCCAAGATCTGTGTGATGTCCATTGCTGTTATCTCTGTAAACATTAAACTATGTCTAAAAACACATACTACAATACtaataatgtgtcaaaatagtaTTACATACTTGGTCATTTTGGCATATTTCATAGTACATTATTATGTGGTCTTGGATGCAACCTCCGTGGTAAAAGTtgcaaaatgattttaaaaaaatctacacacaaacattccTGTCAGCCTTGTACCACATGTGAATGCAGATCtgtatttatttccttatttaattgccaAAACTCCCCAAAgtacttaatattttaaaaaaatgtttgcctTTCCCTTCGGAATTGTGTGTTATAAGTTTATATCCAAGTTTCATATTATGCATCAATGTTTTGCTGGTGTTTGGTGAAGATGTTTAATAaattgatattatattaa

Function

symbol description
tagln3b Predicted to be active in cytoskeleton. Is expressed in several structures, including nervous system; pigment cell; pronephric duct; tail bud; and trigeminal placode. Orthologous to several human genes including TAGLN3 (transgelin 3).
tagln3 Predicted to be involved in central nervous system development. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be active in cytoskeleton.

NR:

description
transgelin-3-like isoform X2

GO:

id name namespace
GO:0007517 muscle organ development biological_process

KEGG:

id description
K20526 TAGLN; transgelin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938100.2 True 1542 mRNA 0.44 5 17880010 17883333

Neighbor

gene id symbol gene type direction distance location
c1qtnf9 LOC108256147,LOC108442199 coding downstream 813 17876714 ~ 17879197 (-)
spata13 LOC108256577 coding downstream 5069 17849766 ~ 17874941 (-)
tmprss7 tmprss7 coding downstream 37832 17831292 ~ 17842178 (-)
LOC113541118 LOC108256139,LOC108442190 coding downstream 51731 17815640 ~ 17828279 (-)
flt1 flt1 coding downstream 69715 17784153 ~ 17810295 (-)
abhd10b abhd10b,LOC108256739,LOC108442198,LOC107716420,LOC107705222,LOC107591218,LOC107654210,LOC107701684 coding upstream 2215 17885548 ~ 17889762 (-)
LOC113541342 acot9,acot9.1,LOC107705219,LOC107654207 coding upstream 7017 17890350 ~ 17899678 (-)
zgc:112982 NA coding upstream 100711 17984044 ~ 17995146 (-)
map7d2b map7d2 coding upstream 114334 17997667 ~ 18019023 (-)
eif1axb eif1axb,EIF1AX,LOC102359197,LOC106603066,LOC107726370,LOC105905255 coding upstream 138331 18021664 ~ 18026948 (-)
G333700 NA non-coding downstream 337658 17541846 ~ 17542352 (-)
G333657 NA non-coding downstream 489897 17389862 ~ 17390113 (-)
G333656 NA non-coding downstream 490269 17389454 ~ 17389741 (-)
G333653 ccdc191 non-coding downstream 494364 17385279 ~ 17385646 (-)
G333652 NA non-coding downstream 495987 17383742 ~ 17384023 (-)
G333932 NA non-coding upstream 16506 17899839 ~ 17902383 (-)
G333934 NA non-coding upstream 19300 17902633 ~ 17902855 (-)
G333939 NA non-coding upstream 22575 17905908 ~ 17906806 (-)
G333971 NA non-coding upstream 41158 17924491 ~ 17924789 (-)
G334038 NA non-coding upstream 145242 18028575 ~ 18028834 (-)
vipr1b vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 other downstream 640894 17185524 ~ 17239116 (-)
zbtb47b zbtb47,znf652,LOC108256615 other downstream 740325 17116098 ~ 17139685 (-)
myd88 myd88 other downstream 990586 16885151 ~ 16889424 (-)
oxsr1b oxsr1,oxsr1b other downstream 1000126 16829790 ~ 16879884 (-)
cpa6 cpa6,LOC106579545 other downstream 1567094 16281271 ~ 16312916 (-)
LOC113541127 LOC108256571 other upstream 24251 17907584 ~ 17908812 (-)
c22h11orf65 c23h11orf65 other upstream 25991 17909324 ~ 17916556 (-)
zmp:0000000991 NA other upstream 32751 17916084 ~ 17931814 (-)
mybl1 mybl1,LOC107663687,LOC107590196 other upstream 554181 18437514 ~ 18520205 (-)
pkia pkia,LOC107666628,LOC107705234 other upstream 1122165 19005498 ~ 19015855 (-)

Expression


Co-expression Network