gtf3ab (LOC100305039)


Basic Information

Item Value
gene id gtf3ab
gene name LOC100305039
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17467758 ~ 17470677 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938107.2
GTCGTTCGGCAAAAAGGCGAATCTACGTGCCTTCGacggaaagaaaaaaagaagaagaagaagaagaagaagaagaagaagaaaaaaaaaacaacaacgtgAATTCATTGTGAATAAAATGGGAGAACGTTTCAAAGATCCGACTAAGAGCTTCTTGTGCTCCTTCGCCAACTGTAAGGCTTCATTTTCCAAGTCATGGAAGCTGGAAGCTCATTACTGCAAACACACTGGGCTGAGACCTTTCGCATGTGATAACTGTGATAAAAGTTTTTGCACCCGCTACCAGCTCACCAGGCACAATCTGAGCCACAGTGGGAAGAAGCCATACCAGTGTATAGTGGATGGATGTTCAGAGGGCTTTACCAGCACTGCAGGGTTAAAGAACCATGTTGAACGTGTGCACCAGCACAAGGAGAAGCACTATGTGtgTGACTATGAGGGTTGTCTGAAAGAATTTCATAAGAATAACCAGCTGAAGTCTCACAAATGTGAGCACATGAACCAGTTACCATTCGAATGTCAGTATGAGGGCTGTGGGAAGAAGTACGCTACCTCTAAAAAGCTGCAAAAACATGAGAAAGTGCATGATgGTTATCCGTGTGCTGAAGAGGGCTGTGCCTTCCAGGGAAGGACGTGGACTGAGTATCAGGCACACAGGAAAGCAGCGCACAGAGAGGCTCTGCAGTGCGACAGCTGTACAAAGGTTTTCCATAAAGCCTGGTTTCTAAAGAAGCACAAACTCTTCGTCCACTTGGGTGTACGGCGTATGTTTAAGTGCACTAAGGAGGGCTGTCCAAAAACCTACACCACGCGTTTCAACCTCCAGAATCACATTCTTTCCTTCCATGAGGGCAAACGCTCCTTCATCTGCCCTCATGACGGCTGTGGGAAAGCTTTCGCCATGGAGGAAAGTCTGAAGCGACATGCTGTAGTCCATGACCCTCAGAAGAAAAAGATGCAGAAGAAGACCAAACGAGGATGGAAGAAGCTTAAACCAAAGACGAACGTGTCGAATGCCTCTGAACTGTCTGCACAGCTGCAAAATCTCTCTCTAAACAAGTCCACGTCCCAGAACAACCCATGAACGTCATGCGGTCACTGAGGAATTTCTAGTCGACTTTAAATTCACTATCCAgcataatttcatttaaaagcacTACTAAATAAACTCTCACTTGTCTGCA
>XM_026938108.2
GGTCGTTCGGCAAAAAGGCGAATCTACGTGCCTTCGacggaaagaaaaaaagaagaagaagaagaagaagaagaagaagaagaaaaaaaaaacaacaacgtgAATTCATTGTGAATAAAATGGGAGAACGTTTCAAAGATCCGACTAAGAGCTTCTTGTGCTCCTTCGCCAACTGTAAGGCTTCATTTTCCAAGTCATGGAAGCTGGAAGCTCATTACTGCAAACACACTGGGCTGAGACCTTTCGCATGTGATAACTGTGATAAAAGTTTTTGCACCCGCTACCAGCTCACCAGGCACAATCTGAGCCACAGTGGGAAGAAGCCATACCAGTGTATAGTGGATGGATGTTCAGAGGGCTTTACCAGCACTGCAGGGTTAAAGAACCATGTTGAACGTGTGCACCAGCACAAGGAGAAGCACTATGTGtgTGACTATGAGGGTTGTCTGAAAGAATTTCATAAGAATAACCAGCTGAAGTCTCACAAATGTGAGCACATGAACCAGTTACCATTCGAATGTCAGTATGAGGGCTGTGGGAAGAAGTACGCTACCTCTAAAAAGCTGCAAAAACATGAGAAAGTGCATGATgGTTATCCGTGTGCTGAAGAGGGCTGTGCCTTCCAGGGAAGGACGTGGACTGAGTATCAGGCACACAGGAAAGCAGCGCACAGAGAGGCTCTGCAGTGCGACAGCTGTACAAAGGTTTTCCATAAAGCCTGGTTTCTAAAGAAGCACAAACTCTTCGTCCACTTGGGTGTACGGCGTATGTTTAAGTGCACTAAGGAGGGCTGTCCAAAAACCTACACCACGCGTTTCAACCTCCAGAATCACATTCTTTCCTTCCATGAGGGCAAACGCTCCTTCATCTGCCCTCATGACGGCTGTGGGAAAGCTTTCGCCATGGAGGAAAGTCTGAAGCGACATGCTGTAGTCCATGACCCTCAGAAGAAAAAGATGCAGAAGACCAAACGAGGATGGAAGAAGCTTAAACCAAAGACGAACGTGTCGAATGCCTCTGAACTGTCTGCACAGCTGCAAAATCTCTCTCTAAACAAGTCCACGTCCCAGAACAACCCATGAACGTCATGCGGTCACTGAGGAATTTCTAGTCGACTTTAAATTCACTATCCAgcataatttcatttaaaagcacTACTAAATAAACTCTCACTTGTCTGCA

Function

NR:

description
transcription factor IIIA-like isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938107.2 True 1184 mRNA 0.46 9 17467758 17470676
XM_026938108.2 False 1182 mRNA 0.46 9 17467758 17470677

Neighbor

gene id symbol gene type direction distance location
si:ch211-140b10.6 polr1d coding downstream 17334 17446518 ~ 17450424 (-)
pdx1 pdx1,LOC107580123 coding downstream 27248 17435073 ~ 17440510 (-)
gramd1c gramd1c coding downstream 51802 17400360 ~ 17415956 (-)
zdhhc23b zdhhc23 coding downstream 69814 17390655 ~ 17397944 (-)
qtrt2 qtrt2 coding downstream 89751 17364641 ~ 17378007 (-)
rpl21 rpl21,LOC107591224,LOC107701647,LOC107585018 coding upstream 8663 17479340 ~ 17483210 (-)
wasf3b wasf3,wasf3b,LOC107705209,LOC107716409,LOC107584970,LOC107654222,LOC107701678 coding upstream 34212 17504889 ~ 17519966 (-)
cdk8 cdk8,LOC107732894,LOC107701677 coding upstream 51106 17521783 ~ 17535395 (-)
LOC113541063 shisa2 coding upstream 142627 17613304 ~ 17619370 (-)
LOC113541192 LOC108256613 coding upstream 158796 17629473 ~ 17636380 (-)
G333657 NA non-coding downstream 77645 17389862 ~ 17390113 (-)
G333656 NA non-coding downstream 78017 17389454 ~ 17389741 (-)
G333653 ccdc191 non-coding downstream 82112 17385279 ~ 17385646 (-)
G333652 NA non-coding downstream 83735 17383742 ~ 17384023 (-)
G333650 ccdc191 non-coding downstream 86522 17380855 ~ 17381236 (-)
G333700 NA non-coding upstream 71169 17541846 ~ 17542352 (-)
G333932 NA non-coding upstream 429162 17899839 ~ 17902383 (-)
G333934 NA non-coding upstream 431956 17902633 ~ 17902855 (-)
G333939 NA non-coding upstream 435231 17905908 ~ 17906806 (-)
G333971 NA non-coding upstream 453814 17924491 ~ 17924789 (-)
vipr1b vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 other downstream 228642 17185524 ~ 17239116 (-)
zbtb47b zbtb47,znf652,LOC108256615 other downstream 328073 17116098 ~ 17139685 (-)
myd88 myd88 other downstream 578334 16885151 ~ 16889424 (-)
oxsr1b oxsr1,oxsr1b other downstream 587874 16829790 ~ 16879884 (-)
cpa6 cpa6,LOC106579545 other downstream 1154842 16281271 ~ 16312916 (-)
LOC113541127 LOC108256571 other upstream 436907 17907584 ~ 17908812 (-)
c22h11orf65 c23h11orf65 other upstream 438647 17909324 ~ 17916556 (-)
zmp:0000000991 NA other upstream 445407 17916084 ~ 17931814 (-)
mybl1 mybl1,LOC107663687,LOC107590196 other upstream 966837 18437514 ~ 18520205 (-)
pkia pkia,LOC107666628,LOC107705234 other upstream 1534821 19005498 ~ 19015855 (-)

Expression


Co-expression Network