armc3 (armc3)


Basic Information

Item Value
gene id armc3
gene name armc3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13322337 ~ 13334525 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938109.2
ATCTACAGACTGAGTGAGCGTTCCTCCGTTTCCTAGCaaccataaaataaatacaggcAAACACACCTAAACCAGAACTGTTAGCTAACTTACTGGAgGTAATAAGTGCATTAAAACCCAATGACTGTATgacagaatggggaaaaaaataaagaaggaagCTGAACCACAGCCCAAACATGAGtttgaaCCACTGCCCATTGAGAGCAAGAGCGCTGCAACAGTGATTCTCATGCTTCAGTCTCCTGAAGAAGAAGTGCTGGTCAAAGCCCTTGAAGCCATCCGTAGATTTGCAGAGAACGGTGATGAGAACAAGAGCTCTCTGATGGCTTTGGGGGCAGTGGAACCACTCACTTGCCTTATAACACATGATGATAAAACTGTTTGCAGAAATGCTTTCACGGCTCTGGGAGTCATGGTTTCGGACAATGATGTCAAACGACTGATCAAGAAACTGAATATTATTCCATCTATCATCACCAAACTGGCACCAGAAGaagACGTTATCGTCCATGAATTTGCTACTCTGCTTTTGGCACATCTGTCCGTGGACATCACATGCAAGGTTCAGATCTTCCAACACGATGGACTGGAACCTCTCCTTCATCTTCTGTCCAGCCCCGATCCTGATGTAAAGAAAAATTCTGTGGAATGCATCTATAATCTTGTTCAGGAATGTTCTAGTCGGGTGGCAGTGCATAAGTTGAATGGACTCCCCCCGCTACTGGAGCTGCTGGGCTCTGAATTTCCCATCATTCAGCAGTTTGCTCTACGCACTCTAGAGAGCATcagcacagacagagaaactCGTGCAGCATTCAGAGAGCAGCAAGGATTCGATCGACTCCTGGAGTTTCTTACAAACAAAGAGTTTACTGACCTGCACTTGGAAGCTCtgaaagtcatctcaaactgtaTGGAGGACGCTGAGTCCATGCAGCTTATTCAGGGGAATGGAGGCCTGGAGAAGTTGCTGCAATTTATCATCACACCCACCGCTCATGATATCCAGGCTAATGCAGTTAAAGCTATCAGCAGAGCAGCACAGCGTAGTGAAAACCGAAAGATCCTGCATGAGCAAAATTTTGAAAAGGCCCTCATTGGATTGCTTGCAGTGGAGAACGACAACATACGTACTGCTGCATGCCAGGCAGTGTCAGCCATGAGCAAGAACCTGAGCAGCAGAGACACTTTCAGACAATTTGatggGATCAGACCTATTGTGCAGCTGCTGAGCAGTGAGGGAAATGAGGTAAAAGAGGCTGCGGCAGAAGCCTTATCAAGCCTTACCCACGGAAACCAACTGAATGCATATGCTGTTTATGAAGCAGATGGAGACAAGCTGCTTGTCCAGCTCCTACAGAATGGCTCTCCTGCAGCAGTAGTGCATGCAGCAGCTGTTCTGAGCAGCATGGCTTCACAGGAAGTGCTTCGCTGTAGCATTCTCTCCCACGGAGCCATGCAGGCACTGCTGAAACTGCTACACTCCACTAATAAACCCATACTCATCAGCGCCACCCAGGCTGTAGCTGCGCTCGCCTGTGATGCAGAGGGAAGGGCTGAGTTAAGAAATGTTGGAGGTCTGCCCCAACTGGTTAACCTGCTGACATCAAAAGACACTGAAATCCGGCGAAGTGCATGCTGGGCAGTGACTGTGTGTGCTAATGATGAACCAGCAGCCACAGAAATGTGCAGATTAGGGGCTTTGGAGATCCTCCAGGAGATCAACTGCTCACTGAACCGTAAGAACAAGTTCAGTGAGGCAGCCTTTCAGAGGCTGTTGAATAGCAACCTCTCGGTAAAATACAGCCTTACAGGACATCTCTTCACCACTGATATCACTACAGACGGCTTCTATGATCCAGGACAGACCAGAGATGGTCACAGGGTTCCTGATCTTGAAGATATAGCAAAGCAGGTTATCAACCAGCACCGAGCCATCATTGCAGTTAATGGAAACCCCCCAGCTGATAAATCAAAAGGCAAAGGGTGGCAGGAGGATGAGAAACAGAGGTGTGACGATGAGTGTAAACCCCAGCAGGAAGCAGTAGAGGAGAAGCCATGGACACTGCCATATGATGCTCAGTTCAACAGTCTGATCAAAGAGACATTCAAATCTGTCCTGCCCTTACATGAAGAGGTGGAAATGTACACTGCCCTGGCTAAGTTGGTGTGTGATGCAATGGGGGGCCCGGTAGATATTGAGAAACAACATGATTTTCTTTGGGAGCTTCACCTGAGTGAGCTGAAGGTTGAGATGCAGTCAAACATCATTCCTATCGGCAAGATCAAAAAGGGAACCTACTATCACAGAGCCCTACTCTTCAAGGTTTTGGCAGACAGGATTGGCTTGAGCTGCAGTTTGGTGAGAGGACAGTACAGTCGTGCCTGGAATGAAGTTCTGCTCCCCTCCACCACCACAAAAGCTACTGGATTTAACCCTCAACTTCAGACTTACATCATAGATCTCATGCACAAACCTGGAACCCTTATGAAGTGTGGCACGCCTGCTGCTGTACAGTACCAGACAATCTAAGAAAAACACATTAGCTCAAAGTTTATAGCTTTCCTTTAGCCCTCTCTGCTCTACACTCCATCTCTGTACTTTTGACCATTAGGCTAATCCTGTTCAATCAACAATTAATCCACCCACTGAATGTGCTATGTTGCAATAACCCACTGATATTCACTATGATGCTGACACAACTGAATTAAATATCTTTGGTATTAAAGCGATAGTAATAACACTAGTAAATATAGATGA

Function

symbol description
armc3 Orthologous to human ARMC3 (armadillo repeat containing 3).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K24124 ARMC3; armadillo repeat-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938109.2 True 2764 mRNA 0.47 17 13322337 13334525

Neighbor

gene id symbol gene type direction distance location
skida1 skida1 coding upstream 44312 13274660 ~ 13278025 (+)
cul1b cul1,LOC107686696,LOC107595130,LOC107727219,LOC107741709,LOC107695409 coding upstream 279821 13021167 ~ 13042516 (+)
LOC113541231 cntnap2,cntnap2a,LOC108256453,LOC108256478,LOC108256479 coding upstream 307228 12766560 ~ 13015109 (+)
ccl34b.4 LOC100304628 coding upstream 609686 12710626 ~ 12712651 (+)
LOC113541349 LOC108256200 coding upstream 614334 12706939 ~ 12708003 (+)
msrb2 msrb2,LOC107735060 coding downstream 1813 13336338 ~ 13341661 (+)
c8g NA coding downstream 9221 13343746 ~ 13350216 (+)
klhl15 klhl15,LOC107727232,LOC107695400,LOC107686713 coding downstream 39039 13373564 ~ 13379652 (+)
trnat-agu_17 NA coding downstream 50676 13385201 ~ 13385274 (+)
cmbl cmbl coding downstream 51549 13386074 ~ 13396461 (+)
G331468 NA non-coding upstream 31938 13287447 ~ 13290399 (+)
G331487 NA non-coding upstream 47926 13274127 ~ 13274411 (+)
G331486 NA non-coding upstream 48296 13273743 ~ 13274041 (+)
G331482 NA non-coding upstream 52695 13269427 ~ 13269642 (+)
G331480 NA non-coding upstream 57751 13264349 ~ 13264586 (+)
G331498 NA non-coding downstream 25755 13360280 ~ 13361018 (+)
G331496 eif2s3,LOC102783563 non-coding downstream 26844 13361369 ~ 13362702 (+)
G331502 NA non-coding downstream 46119 13380644 ~ 13382636 (+)
LOC117595809 NA non-coding downstream 623499 13958024 ~ 13962184 (+)
G332111 NA non-coding downstream 1353638 14688163 ~ 14703270 (+)
G331476 NA other upstream 63921 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 609659 12706939 ~ 12712678 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 1165550 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 1573778 11717415 ~ 11748559 (+)
G330257 NA other upstream 2347422 10973264 ~ 10974915 (+)
stau2 stau2,LOC107691439 other downstream 1799828 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 1917110 15251635 ~ 15265895 (+)
G332636 NA other downstream 2231650 15566175 ~ 15566663 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 3765639 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 3950557 17285082 ~ 17302004 (+)

Expression


Co-expression Network