Gene
RNA
| Item | Value |
|---|---|
| gene id | arxa |
| gene name | arx,arxa,LOC107586699,LOC107663641 |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 19429768 ~ 19436760 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| arxa | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within forebrain development; neuron development; and pancreatic A cell development. Predicted to be located in nucleus. Is expressed in several structures, including endocrine system; floor plate; forebrain; forebrain neural keel; and neural plate. Human ortholog(s) of this gene implicated in X-linked lissencephaly 2; corpus callosum agenesis-abnormal genitalia syndrome; developmental and epileptic encephalopathy 1; and intellectual disability (multiple). Orthologous to human ARX (aristaless related homeobox). |
| arx | Enables DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific double-stranded DNA binding activity. Predicted to be involved in enteric nervous system development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including forebrain development; lipid digestion; and positive regulation of organ growth. Predicted to be located in nucleus. Predicted to be part of chromatin. Implicated in X-linked lissencephaly 2; corpus callosum agenesis-abnormal genitalia syndrome; developmental and epileptic encephalopathy 1; and intellectual disability (multiple). |
| description |
|---|
| homeobox protein ARX |
| id | name | namespace |
|---|---|---|
| GO:0021539 | subthalamus development | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0048666 | neuron development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| K09452 | ARX; homeobox protein aristaless-related |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_026938115.2 | True | 2545 | mRNA | 0.53 | 5 | 19429768 | 19436760 |
| XM_026938116.2 | False | 1364 | mRNA | 0.61 | 5 | 19429768 | 19435547 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| ndufb4 | ndufb4 | coding | upstream | 33878 | 19391973 ~ 19395890 (+) |
| LOC117595802 | NA | coding | upstream | 93118 | 19335026 ~ 19336650 (+) |
| LOC117595764 | NA | coding | upstream | 94488 | 19332174 ~ 19335280 (+) |
| ctnnd2a | ctnnd2a,LOC108256437,LOC108438556,LOC107716425 | coding | upstream | 101643 | 19060889 ~ 19328125 (+) |
| zc2hc1a | zc2hc1a | coding | upstream | 396107 | 19021006 ~ 19033661 (+) |
| pcyt1ba | pcyt1b,LOC107721854,LOC107590340,LOC107586799,LOC107705205 | coding | downstream | 61542 | 19498302 ~ 19506536 (+) |
| mtmr6 | mtmr6,LOC107721921,LOC107705267,LOC107590218 | coding | downstream | 142550 | 19579310 ~ 19593452 (+) |
| amer2 | amer2 | coding | downstream | 163805 | 19600565 ~ 19603770 (+) |
| LOC113541258 | LOC108256477,LOC108439743,LOC107705271,LOC107721848,LOC107590344,LOC107586729,LOC107671347 | coding | downstream | 303297 | 19740057 ~ 19750055 (+) |
| LOC113541169 | klhl34 | coding | downstream | 447287 | 19884047 ~ 19887557 (+) |
| G334733 | NA | non-coding | upstream | 78016 | 19345889 ~ 19351752 (+) |
| G334575 | NA | non-coding | upstream | 496517 | 18933049 ~ 18933251 (+) |
| G334573 | NA | non-coding | upstream | 497058 | 18932502 ~ 18932710 (+) |
| G334386 | NA | non-coding | upstream | 575765 | 18761089 ~ 18854003 (+) |
| LOC117595807 | NA | non-coding | upstream | 723675 | 18705292 ~ 18706093 (+) |
| LOC117595782 | NA | non-coding | downstream | 84605 | 19521365 ~ 19522260 (+) |
| G334806 | NA | non-coding | downstream | 124342 | 19561102 ~ 19589060 (+) |
| G334888 | NA | non-coding | downstream | 267925 | 19704685 ~ 19707006 (+) |
| G335214 | NA | non-coding | downstream | 329710 | 19766470 ~ 19766826 (+) |
| G335215 | NA | non-coding | downstream | 330703 | 19767463 ~ 19768343 (+) |
| dap | dap,LOC107705232,LOC107701690,LOC107654217 | other | upstream | 1832 | 19317857 ~ 19427936 (+) |
| LOC117595806 | zfhx4,LOC107590192 | other | upstream | 682291 | 18712048 ~ 18747477 (+) |
| G334373 | NA | other | upstream | 711815 | 18693149 ~ 18717953 (+) |
| mcmdc2 | mcmdc2 | other | upstream | 943759 | 18467878 ~ 18486009 (+) |
| mtfr1 | mtfr1 | other | upstream | 1106473 | 18315354 ~ 18323295 (+) |
| G334838 | NA | other | downstream | 139351 | 19576111 ~ 19577073 (+) |
| cip2a | kiaa1524 | other | downstream | 200108 | 19636868 ~ 19703804 (+) |
| si:ch73-264p11.1 | sh21b | other | downstream | 241721 | 19678481 ~ 19683870 (+) |
| G335231 | NA | other | downstream | 351823 | 19788583 ~ 19789058 (+) |
| smpx | smpx,LOC107590224,LOC107663668,LOC107721880,LOC107705278,LOC107671350 | other | downstream | 433621 | 19870381 ~ 19882836 (+) |
