spag6 (spag6,LOC107686700,LOC107741767,LOC107727238)


Basic Information

Item Value
gene id spag6
gene name spag6,LOC107686700,LOC107741767,LOC107727238
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17074213 ~ 17085476 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938124.2
GCTTAAACAACAACAGGGAGCGAGTGAATTGCGGGTTTCTATTGCgcgtattttttttcttacttcttTGAGAGAGTCATTCTGGTGTGATTTTTTGTTGTGGGATTGAAACTATGAGCCAGCGACATGTTTTACAAGTTTTTGAGCAGTACCagaaagaaaggatgaagtTCGTGCAAACAGTTTCAGAGCTTGCAACAAGACCTCAGAATATCGAAACACTTCAAAATGCAGGTGTGATGTCCCTCCTGAGGCCTCTCCTCCTGGATGCGGTCCCGACTATCCAGCAGACGGCCGCTCTGGCTCTTGGAAGACTCGCCAGCTACAACGATGACCTGGCCGAGGCTGTGGTGAAGGGAGACATTCTGCCTCAGCTCGTTTACTCTCTGGCCGAGCAGAACCGCTTCTATAAGAAGGCGGTGGCGTTTGTTCTCCGTGCCGTGGCGAAGCACTCACCCGAGCTGGCACAAGCCGTAGTAGACTGTGGTGCCCTCGATGCTCTCGTCGTCTCTCTGGAGGAGTTCGATCCTGGAGTGAAAGAGGCTGCTGCATGGGCTCTGGGCTACATCGCTCGCCACAACGGCTCATTGGCTCAGGCGGTGGTGGACGCAGGCGCTGTTCCTCTGCTCGTTCTCTGCATCCAGGAGCCTGAGATTGCCCTGAAGAGGATCTCTGCTTCAACGCTGAGCGACATCTCCAAACACTCGCCAGAGCTCGCACAAACTGTAGTGGACACTGGAGCCATTGCGCACCTGGCGCAGATGACCCTGTACCCAGACGCCAAACTGAAGaGGCACGTGTTCTCGGCTCTCGGCCAAATCTCCAAGCACTCTGTGGATCTGGCAGAGATGGTGGTGGAGGCTGAGATCTTCCCTGCTGTACTGGCCTGCCTTAAAGACCCAGATGAGTATGTGAGGAAGAACATCAGCACGCTGATGCGAGAGATCACAAAACACACCCCTGAGTTATCCCAGATGATCGTGAACGCTGGAGGTGTAGCCGCTGTGATTGATTATCTAGGGGACTCCAGAGGGAATGTGCGATTGCCTGGTATCATGATGCTTGGCTACGTGGCTGCACACTCGGAGAACCTCGCCATGGCTGTCATTGTATCTAAGGGTGTACCACAGCTGGCTATCTGCCTGGCGGAGGAGACGGAGGATCACATGAAGGCTGCAACAGCTTGGGCACTGGGGCAGATCGGCCATCACACACCTGAGCACGCAAGAGCTGTGGCCATGTCCAACGTGCTCCCCAAACTGCTGAGTCTCTACCtggacacacacagctctgaggACCTGCAAGTCAAGGCAAAGAAAGCTTTAAAGAGCATCCTTCAGAAGTGCACTTACCTTCCAGCACTGGAGCCGCTCCTCTACGAAGCTCCCAGCAATGTTCTCAAACACGTCATCTGCCAGTTCAGCAAGGTTCTTCCACATGACAGTAAAGCACGGAAGTTGTTTGTAACTAGCGGAGGACTGAAGAAGGTGCAGGAAATTAAAGCCGAGCCCGGTTCTGCTCTGCAGGAGTACATCAACGCCATCAACGCCTGCTACCCCGAGGAGATAGTCAGGTACTACTCACCTGGATATTCAGAAGCACTACTGGAAAGGATCGAGAACTATCAGCCTGTTTAGGACAGGAAGCTCATCTCCACGATTAGCACTCTTTACGGCTTTATTAAATACTCTCATTAAATTCATGGCTCTGTGATATTTGCCATTAGCATTTGATTATTGACTCTGTGTCGCAGCACTGTATGTAGTATACTGTCAAATgggattttaatttttttcaaagtaaaaatatgtttttatgttttcacacttttattaataaacaacaagaAATCACTTAAAATTGAGAAATAGAGGAATAGTAGGTTCTAAAGCATCAATAAACCCAGTGAGTgccttttattta
>XM_034298161.1
aatcacacacactcacacactatggacaatttggaaatgccacaATCAGCCtgcaatgcatgtctttggactgggggaggaaaccggagtacccagagaaAACCCCTGATGCAGGCAGAGAACATGccaattccacacacacagagcggagGCAGgcttcgaacccccaaccctgaagTTTTTGAGCAGTACCagaaagaaaggatgaagtTCGTGCAAACAGTTTCAGAGCTTGCAACAAGACCTCAGAATATCGAAACACTTCAAAATGCAGGTGTGATGTCCCTCCTGAGGCCTCTCCTCCTGGATGCGGTCCCGACTATCCAGCAGACGGCCGCTCTGGCTCTTGGAAGACTCGCCAGCTACAACGATGACCTGGCCGAGGCTGTGGTGAAGGGAGACATTCTGCCTCAGCTCGTTTACTCTCTGGCCGAGCAGAACCGCTTCTATAAGAAGGCGGTGGCGTTTGTTCTCCGTGCCGTGGCGAAGCACTCACCCGAGCTGGCACAAGCCGTAGTAGACTGTGGTGCCCTCGATGCTCTCGTCGTCTCTCTGGAGGAGTTCGATCCTGGAGTGAAAGAGGCTGCTGCATGGGCTCTGGGCTACATCGCTCGCCACAACGGCTCATTGGCTCAGGCGGTGGTGGACGCAGGCGCTGTTCCTCTGCTCGTTCTCTGCATCCAGGAGCCTGAGATTGCCCTGAAGAGGATCTCTGCTTCAACGCTGAGCGACATCTCCAAACACTCGCCAGAGCTCGCACAAACTGTAGTGGACACTGGAGCCATTGCGCACCTGGCGCAGATGACCCTGTACCCAGACGCCAAACTGAAGaGGCACGTGTTCTCGGCTCTCGGCCAAATCTCCAAGCACTCTGTGGATCTGGCAGAGATGGTGGTGGAGGCTGAGATCTTCCCTGCTGTACTGGCCTGCCTTAAAGACCCAGATGAGTATGTGAGGAAGAACATCAGCACGCTGATGCGAGAGATCACAAAACACACCCCTGAGTTATCCCAGATGATCGTGAACGCTGGAGGTGTAGCCGCTGTGATTGATTATCTAGGGGACTCCAGAGGGAATGTGCGATTGCCTGGTATCATGATGCTTGGCTACGTGGCTGCACACTCGGAGAACCTCGCCATGGCTGTCATTGTATCTAAGGGTGTACCACAGCTGGCTATCTGCCTGGCGGAGGAGACGGAGGATCACATGAAGGCTGCAACAGCTTGGGCACTGGGGCAGATCGGCCATCACACACCTGAGCACGCAAGAGCTGTGGCCATGTCCAACGTGCTCCCCAAACTGCTGAGTCTCTACCtggacacacacagctctgaggACCTGCAAGTCAAGGCAAAGAAAGCTTTAAAGAGCATCCTTCAGAAGTGCACTTACCTTCCAGCACTGGAGCCGCTCCTCTACGAAGCTCCCAGCAATGTTCTCAAACACGTCATCTGCCAGTTCAGCAAGGTTCTTCCACATGACAGTAAAGCACGGAAGTTGTTTGTAACTAGCGGAGGACTGAAGAAGGTGCAGGAAATTAAAGCCGAGCCCGGTTCTGCTCTGCAGGAGTACATCAACGCCATCAACGCCTGCTACCCCGAGGAGATAGTCAGGTACTACTCACCTGGATATTCAGAAGCACTACTGGAAAGGATCGAGAACTATCAGCCTGTTTAGGACAGGAAGCTCATCTCCACGATTAGCACTCTTTACGGCTTTATTAAATACTCTCATTAAATTCATGGCTCTGTGATATTTGCCATTAGCATTTGATTATTGACTCTGTGTCGCAGCACTGTATGTAGTATACTGTCAAATgggattttaatttttttcaaagtaaaaatatgtttttatgttttcacacttttattaataaacaacaagaAATCACTTAAAATTGAGAAATAGAGGAATAGTAGGTTCTAAAGCATCAATAAACCCAGTGAGTgccttttattta
>XM_034298162.1
aatcacacacactcacacactatggacaatttggaaatgccacaATCAGCCtgcaatgcatgtctttggactgggggaggaaaccggagtacccagagaaAACCCCTGATGCAGGCAGAGAACATGccaattccacacacacagagcggagGCAGgcttcgaacccccaaccctgaagGTGTGATGTCCCTCCTGAGGCCTCTCCTCCTGGATGCGGTCCCGACTATCCAGCAGACGGCCGCTCTGGCTCTTGGAAGACTCGCCAGCTACAACGATGACCTGGCCGAGGCTGTGGTGAAGGGAGACATTCTGCCTCAGCTCGTTTACTCTCTGGCCGAGCAGAACCGCTTCTATAAGAAGGCGGTGGCGTTTGTTCTCCGTGCCGTGGCGAAGCACTCACCCGAGCTGGCACAAGCCGTAGTAGACTGTGGTGCCCTCGATGCTCTCGTCGTCTCTCTGGAGGAGTTCGATCCTGGAGTGAAAGAGGCTGCTGCATGGGCTCTGGGCTACATCGCTCGCCACAACGGCTCATTGGCTCAGGCGGTGGTGGACGCAGGCGCTGTTCCTCTGCTCGTTCTCTGCATCCAGGAGCCTGAGATTGCCCTGAAGAGGATCTCTGCTTCAACGCTGAGCGACATCTCCAAACACTCGCCAGAGCTCGCACAAACTGTAGTGGACACTGGAGCCATTGCGCACCTGGCGCAGATGACCCTGTACCCAGACGCCAAACTGAAGaGGCACGTGTTCTCGGCTCTCGGCCAAATCTCCAAGCACTCTGTGGATCTGGCAGAGATGGTGGTGGAGGCTGAGATCTTCCCTGCTGTACTGGCCTGCCTTAAAGACCCAGATGAGTATGTGAGGAAGAACATCAGCACGCTGATGCGAGAGATCACAAAACACACCCCTGAGTTATCCCAGATGATCGTGAACGCTGGAGGTGTAGCCGCTGTGATTGATTATCTAGGGGACTCCAGAGGGAATGTGCGATTGCCTGGTATCATGATGCTTGGCTACGTGGCTGCACACTCGGAGAACCTCGCCATGGCTGTCATTGTATCTAAGGGTGTACCACAGCTGGCTATCTGCCTGGCGGAGGAGACGGAGGATCACATGAAGGCTGCAACAGCTTGGGCACTGGGGCAGATCGGCCATCACACACCTGAGCACGCAAGAGCTGTGGCCATGTCCAACGTGCTCCCCAAACTGCTGAGTCTCTACCtggacacacacagctctgaggACCTGCAAGTCAAGGCAAAGAAAGCTTTAAAGAGCATCCTTCAGAAGTGCACTTACCTTCCAGCACTGGAGCCGCTCCTCTACGAAGCTCCCAGCAATGTTCTCAAACACGTCATCTGCCAGTTCAGCAAGGTTCTTCCACATGACAGTAAAGCACGGAAGTTGTTTGTAACTAGCGGAGGACTGAAGAAGGTGCAGGAAATTAAAGCCGAGCCCGGTTCTGCTCTGCAGGAGTACATCAACGCCATCAACGCCTGCTACCCCGAGGAGATAGTCAGGTACTACTCACCTGGATATTCAGAAGCACTACTGGAAAGGATCGAGAACTATCAGCCTGTTTAGGACAGGAAGCTCATCTCCACGATTAGCACTCTTTACGGCTTTATTAAATACTCTCATTAAATTCATGGCTCTGTGATATTTGCCATTAGCATTTGATTATTGACTCTGTGTCGCAGCACTGTATGTAGTATACTGTCAAATgggattttaatttttttcaaagtaaaaatatgtttttatgttttcacacttttattaataaacaacaagaAATCACTTAAAATTGAGAAATAGAGGAATAGTAGGTTCTAAAGCATCAATAAACCCAGTGAGTgccttttattta

Function

symbol description
spag6 Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; nervous system; pronephric duct; and spinal cord neural tube. Orthologous to human SPAG6 (sperm associated antigen 6).

NR:

description
sperm-associated antigen 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938124.2 False 1923 mRNA 0.50 11 17077631 17085476
XM_034298161.1 True 1963 mRNA 0.51 11 17074213 17085476
XM_034298162.1 False 1867 mRNA 0.51 10 17074213 17085476

Neighbor

gene id symbol gene type direction distance location
plcd1a plcd1 coding upstream 59419 16985047 ~ 17014794 (+)
acaa1 acaa1,LOC107701655,LOC107758307,LOC107741015,LOC107591283,LOC107670419 coding upstream 113367 16953684 ~ 16960846 (+)
LOC113541068 LOC108256337 coding upstream 255774 16805646 ~ 16818439 (+)
LOC113541353 slco5a1,LOC108256392,LOC107741005,LOC107686683,LOC107584939,LOC107695420,LOC107758302 coding upstream 389242 16639105 ~ 16684971 (+)
sulf1 sulf1 coding upstream 442161 16537653 ~ 16632052 (+)
gars1 gars,LOC107591252,LOC107754935,LOC103377215,LOC107733158,LOC102797257 coding downstream 734 17086210 ~ 17098345 (+)
klhl40b klhl40,LOC108256616,LOC107701660,LOC107754945,LOC107585012,LOC107591253,LOC107733151 coding downstream 26292 17111768 ~ 17115776 (+)
sec22c sec22c coding downstream 77524 17163000 ~ 17171598 (+)
LOC113541296 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 coding downstream 199628 17285104 ~ 17286736 (+)
LOC117595788 NA coding downstream 201664 17287140 ~ 17290895 (+)
G333244 map3k20,LOC108439325,LOC108256334,LOC102795565,LOC101475626 non-coding upstream 176358 16893006 ~ 16897855 (+)
LOC113541357 NA non-coding upstream 184052 16888906 ~ 16890161 (+)
G333232 NA non-coding upstream 244234 16732916 ~ 16829979 (+)
G333148 NA non-coding upstream 440430 16605148 ~ 16633783 (+)
G333157 NA non-coding upstream 454124 16595781 ~ 16620089 (+)
G333360 NA non-coding downstream 100653 17186129 ~ 17186675 (+)
G333548 NA non-coding downstream 277395 17362871 ~ 17363075 (+)
G333582 NA non-coding downstream 360709 17446185 ~ 17447043 (+)
G333787 NA non-coding downstream 582160 17667636 ~ 17667844 (+)
G333791 NA non-coding downstream 584940 17670416 ~ 17670625 (+)
G332636 NA other upstream 1507550 15566175 ~ 15566663 (+)
stau2 stau2,LOC107691439 other upstream 1759245 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other upstream 1808318 15251635 ~ 15265895 (+)
G331476 NA other upstream 3815797 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 4361535 12706939 ~ 12712678 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 14688 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 199606 17285082 ~ 17302004 (+)
rnf6 rnf6,LOC106590444 other downstream 450468 17535944 ~ 17542387 (+)
pan3 pan3,LOC107705213 other downstream 676055 17761531 ~ 17796521 (+)
G333943 LOC108256468 other downstream 901286 17986762 ~ 17993014 (+)

Expression


Co-expression Network