cul1b (cul1,LOC107686696,LOC107595130,LOC107727219,LOC107741709,LOC107695409)


Basic Information

Item Value
gene id cul1b
gene name cul1,LOC107686696,LOC107595130,LOC107727219,LOC107741709,LOC107695409
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13021167 ~ 13042516 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938128.2
AGGTTTGAGGACATGGACActaggggagtgtgtgtgtgtgagagtgtgagtgtttgAGAGCTCTGCTCGCTGCCTCAGTGAAGCTAAAGGGCGGCAGAGGAGCTAAGAGGAGCTAGTTGAGCTGCTTGCACAATGGTCACATGGTGAAGCTGGTGAACTCAGCACACGTATCTGAACTGGCCACCATGGAGTGTTTGTGAAACACTGACATTTTCTAAGTGGAAGGCAGAAAGGAGTGAAGATAAGCAGGCCAGTGACGAGACAATGTCGTCCAACAGGCCCCAGAACCCACACGGGCTCAAACAGATTGGGCTGGACCAGATCTGGGATGACCTGCGGGCAGGGATTCAACAGGTGTATACGCGACAGAGCATGGCCAGGTCCCGCTACATGGAGCTCTACACACATGTTTACAATTACTGTACCAGTGTCCATCAGTCAAACCAGGCAAGGGGTGCAGGCATTCCCCCCACCAAACCCTCCAAGAAGTCCCCCACTCCAGGGGGAGCACAGTTTGTTGGGCTTGAACTTTACAAAAGACTGAAGGAGTTTCTAAAGAGCTATTTAACAAATCTTCTGAAGGATGGGGAAGATCTGATGGACGAAAGCGTTCTGAAGTTTTACACGCAGCAGTGGGAGGACTACCGCTTCTCCAGTAAAGTGTTAAATGGGATTTGCGCCTACCTCAACAGACACTGGGTACGCCGGGAGTGTGACGAGGGGCGGAAAGGAATTTATGAAATCTATTCGCTTGCCTTGGTGACATGGAGAGAGTGTTTATTCAGACCTCTAAATAAACAGGTGACGAATGCAGTACTGAAACTcattgagagagaaagaaacggCGAGACTATTAACACCAGGCTGATCAGTGGAGTTGTACAGTCATATGTTGAACTGGGCCTGAATGAGGACGATGCCTTTGCTAAAGGACCCACATTATCTGTATACAAAGAGTACTTTGAGAGCCAGTTCTTGGCTGATACAGAACGCTTCTACACAAGGGAAAGCACAGAGTTCCTCCAACAAAACCCTGTAACTGAATACATGAAAAAGGCAGAAGCACGGCTGTTAGAGGAGCAGCGGCGGGTTCAGGTTTACCTTCATGAGAGCACACAAGACGAGCTGGCTCGCAAGTGTGAACAGGTTCTCATAGAGAAACACCTGGAGATTTTCCACACAGAGTTCCAGAACCTTCTGGATGCTGACAAGAACGAAGATCTGGGCCGAATGTACAACCTTGTCTCACGCATCACGGACGGTTTAGGGGAGTTGAAGAAACTCTTGGAGACGCACATCCACAACCAAGGCCTGGCAGCCATTGAGAAGTGCGGGGACTCAGCTCTCAATGATCCTAAAATGTATGTACAAACAATATTGGATGTGCACAAGAAGTACAATGCATTGGTGATGTCGGCGTTTAATAACGACGCAGGCTTCGTGGCTGCTCTTGATAAGGCCTGTGGGAGATTCATCAACAATAACGCCATTACAAAGATGGCTCAGTCCTCCAGCAAATCTCCAGAACTGCTGGCCAGATACTGTGACTCCTTACTGAAGAAGAGCTCAAAGAACCCTGAGGAGGCGGAGCTGGAGGACACGCTCAACCAAGTGATGGTGGTTTTCAAATACATTGAAGATAAGGATGTTTTCCAGAAATTCTATGCCAAAATGCTGGCTAAGAGGCTGGTTCACCAGAACAGTGCCAGTGATGATGCCGAGGCCAGTATGATCTCCAAATTAAAGCAAGCATGTGGTTTTGAGTACACCTCCAAACTACAGCGCATGTTCCAGGACATCGGTGTCAGCAAGGACTTGAACGAGCAGTTTAAAAAGCACCTTTCAAACTCTGAGCCTTTGGACTtgGATTTTAGCATTCAAGTTCTCAGCTCAGGATCCTGGCCTTTCCAGCAGTCATGCACATTTGCATTGCCTTCAGAGCTGGAGCGCAGTTACCAAAGATTCACAGCTTTCTATGCCAGCAGACACAGTGGGCGCAAACTGACGTGGCTCTACCATTTATCCAAGGGCGAGCTAGTCACCAACTGCTTCAAGAACAGATACACCCTACAGGCATCCACCTTCCAGATGGCCATTCTGCTGCAGTTCAACACAGAGAACAGCTACACCGTTCAACAGCTGGCCGACAGCACACAGATTAAAGTAgaTATTTTGGTTCAGGTTTTGCAAATCCTGTTGAAGTCCAAGTTGCTGGTTTTGGAGGACGAGAATGCAAACGTCGATGAAATGGACTTCAAACCTGATACACTCATAAAGCTTTTCTTGGGCTATAAAAACAAGAAGTTGCGGGTCAACATCAACGTGCCAATGAAGACGGAGCAGAAACAAGAGCAGGAgacaacacacaaaaacatcgaggaggacagaaagctcCTCATACAGgctgCTATCGTCAGGATTATGAAGATGAGGAAAGTACTGAAGCACCAGCAGCTCCTTGCAGAAGTACTAAACCAGTTGTCGTCACGCTTCAAACCTCGAGTCCCTGTCATCAAGAAATGCATCGATATTTTGATTGAGAAGGAATACCTGGAGCGCGTCGACGGCGAGAAGGACACCTACAGCTACCTGGCTTAAACACTTACTTCTAAAGTCCGACTCAAACATCATTCCTGAAGCCTCTTGGCTTTCATTATAAGGGATGCACTCAAGGAACTGAACACTGGAGCTCCCTTTAAATGCAGGGGTCTAACACTGCTGTTCTCCTGAAGTCTCGGCTCAGCCGCTCAGGATCTCCTTCGCCCTTTCCATCTGTAAATAAGTCGCCGTACCCTTAGTGAGACCTGACCTGGCTTCAGGGTTGCATGTTTCTGCCTCTCATCTGAAACACATAGctcattaatttaatattaaattgaaTGACTTTGGACTGACTTTAAAAAGGTTATTATTGCATCTACGAAGACAAATCATGAATTCAGGCGGCGctttatgaatatatttgttaaactggcCCTTGTAGAGTTGTGTAAGCAGCCTTTATCCGCTCCATCATTTGTATAGTGTggtttgttttataaatgtcatgaataaactttaaattttctgtaagTTGT

Function

symbol description
cul1 Predicted to enable ubiquitin protein ligase binding activity and ubiquitin-protein transferase activity. Involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process and protein ubiquitination. Located in plasma membrane. Part of Parkin-FBXW7-Cul1 ubiquitin ligase complex and SCF ubiquitin ligase complex.

NR:

description
PREDICTED: cullin-1-like

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG:

id description
K03347 CUL1, CDC53; cullin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938128.2 True 3077 mRNA 0.47 22 13021167 13042516

Neighbor

gene id symbol gene type direction distance location
LOC113541231 cntnap2,cntnap2a,LOC108256453,LOC108256478,LOC108256479 coding upstream 6058 12766560 ~ 13015109 (+)
ccl34b.4 LOC100304628 coding upstream 308516 12710626 ~ 12712651 (+)
LOC113541349 LOC108256200 coding upstream 313164 12706939 ~ 12708003 (+)
hs6st1b hs6st1b,LOC108256600,LOC108434959,LOC107558548,LOC107697682,LOC107677314,LOC107729660,LOC107590258,LOC106579591 coding upstream 522121 12428457 ~ 12499046 (+)
bcl2a bcl2 coding upstream 786984 12181785 ~ 12234183 (+)
skida1 skida1 coding downstream 232144 13274660 ~ 13278025 (+)
armc3 armc3 coding downstream 279821 13322337 ~ 13334525 (+)
msrb2 msrb2,LOC107735060 coding downstream 293822 13336338 ~ 13341661 (+)
c8g NA coding downstream 301230 13343746 ~ 13350216 (+)
klhl15 klhl15,LOC107727232,LOC107695400,LOC107686713 coding downstream 331048 13373564 ~ 13379652 (+)
LOC113541232 NA non-coding upstream 219042 12797361 ~ 12802125 (+)
G331280 NA non-coding upstream 279489 12741117 ~ 12741678 (+)
G331277 NA non-coding upstream 287464 12732809 ~ 12733703 (+)
G331161 NA non-coding upstream 570820 12448762 ~ 12450347 (+)
G331003 NA non-coding upstream 747877 12211250 ~ 12273290 (+)
G331342 NA non-coding downstream 1799 13044315 ~ 13049452 (+)
G331343 NA non-coding downstream 8526 13051042 ~ 13051859 (+)
G331344 NA non-coding downstream 11769 13054285 ~ 13054519 (+)
G331345 NA non-coding downstream 14002 13056518 ~ 13057241 (+)
G331348 NA non-coding downstream 18819 13061335 ~ 13061659 (+)
G331263 LOC108256200,LOC100304628 other upstream 308489 12706939 ~ 12712678 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 864380 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 1272608 11717415 ~ 11748559 (+)
acad11 acad11,LOC107715568,LOC104947469 other upstream 2036958 10874209 ~ 10984209 (+)
G331476 NA other downstream 215378 13257894 ~ 13258416 (+)
stau2 stau2,LOC107691439 other downstream 2091837 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 2209119 15251635 ~ 15265895 (+)
G332636 NA other downstream 2523659 15566175 ~ 15566663 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 4057648 17100164 ~ 17110027 (+)

Expression


Co-expression Network