LOC113541258 (LOC108256477,LOC108439743,LOC107705271,LOC107721848,LOC107590344,LOC107586729,LOC107671347)


Basic Information

Item Value
gene id LOC113541258
gene name LOC108256477,LOC108439743,LOC107705271,LOC107721848,LOC107590344,LOC107586729,LOC107671347
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19740057 ~ 19750055 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938138.2
GTCTCTGGAAGACCGTGACACGACCTGAAGGTTCTGAAGAAAAGGAGAAGGTCCAGACTTCGGCTTGAGCATGAGGTTGATTCTGTTGAGCCTGAGGGTGCTGTGTTTGGCCTGCTTGTGGCCCGTCACGCTGCTTAACCACCGCCACCCAAACCGCAGGAAGAACAAGGACGTGTACCTGGGAGAACACGCCAAGAACAAACACCTGGGCCGGATTGACTACAGGCTAAAAAAGCAGGACAGCACCAAGTCGCTCCTGATCAAAACCGAGCAGCTGCTGAGGATCGAGGAACACGACTTTGCCATGCGACCGGGATTCGGAGGCTCTGCCATTCCCGTGGGCATCGACGTACAGGTGGAGAGTTTAGACAGCATCTCAGAGGTCAACATGGACTTCACCATGACTCTCTACCTGAGGCACTACTGGAAAGACGAGCGTCTGGCTTTTCCCTCTCTTAACAACCTGAGCCGCACGTTCGACGCCCGGCTGGTGAAGAAGATCTGGGTGCCTGATGTCTTCTTTGTCCACTCAAAGCGCTCGTTCATTCATGACACCACCATGGAGAACATCATGCTGAGGGTTTACCCAGACGGCAACGTTCTTTATAGCGTCAGGATAACAGTGACGGCTCAGTGCTCCATGGACTTCAGCAGTTTTCCTCTGGACACTCAGAACTGTTCTCTGGAGCTGGAGAGCTATGCTTATAATGAAAACGACCTCATGCTGTACTGGAAGAACGGAAACGACTCTCTAAGAACCGATGAGATTGTTCTCTCGCAGTTCTTTATAGAAGAGTTTAACCCTTCCAATGGCCTGGCTTTCTACAGCAGTACCgGCTGGTACAACAGACTCTACATCAACTTCATCCTCAGGAGacacattttcttcttcatgcTGCAGACCTACTTTCCGACAATGTTAATGGTCGTGCTCTCCTGGGTGTCCTTTTGGATCGACAGACGGGCGGTGCCTGCTCGCGTCTCACtcgGAATCACCACCGTCTTGACCATGTCGACCATCATCACGGGCGTGTCGGCATCCATGCCCCAGGTGTCCTATGTAAAAGCGGTGGATATCTACCTGTGGGTCAGCTTCCTGTTTGTCTTCCTGTCGGTCATCGAGTACGCTGCTGTTAACTACTTCACCACTGTGGAAGaaatgaagaagatgaagaagggAAAGCTCTCCAGATTCGACGCTTCCCAGGCCATGGCCTTCGATGGCTGTTTCCATGACAACGATATCGAGCTCAGCACCTTCCCTCAGCTGACAGACCTCGGCGTGGAACCTCCCGTGTCCTCGCAGAACTCCAGCGTACCCGAGGCTCCTCCTGCACTGGGCACACGACTGCGGAAAACACAGCCTCTGTGCTTCCACCTCCAGCTGCTCATGAGCAACAGCTACATGATCGACTCGTACTCCAGGATCCTGTTTCCTCTCGCCTACCTCACCTTTAACATCATCTACTGGAGCATCTACACCTGATCCTCAAACAGAACCTGAAATCAGGAGAAAAACTGATCAGGATGCTTCTTTCACACAAATGTGAATCATGATGATTAGTTTATGTCAGAATAGTCTTGTGACATCATGTGagttcatggaaggagtctccagtgtcactatTACTTaatttttctgacatcttcaggacaaaggagtttatTTTCCTC

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05190 GABRR; gamma-aminobutyric acid receptor subunit rho

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938138.2 True 1674 mRNA 0.51 9 19740057 19750055

Neighbor

gene id symbol gene type direction distance location
amer2 amer2 coding upstream 136287 19600565 ~ 19603770 (+)
mtmr6 mtmr6,LOC107721921,LOC107705267,LOC107590218 coding upstream 146605 19579310 ~ 19593452 (+)
pcyt1ba pcyt1b,LOC107721854,LOC107590340,LOC107586799,LOC107705205 coding upstream 233521 19498302 ~ 19506536 (+)
arxa arx,arxa,LOC107586699,LOC107663641 coding upstream 303297 19429768 ~ 19436760 (+)
ndufb4 ndufb4 coding upstream 344167 19391973 ~ 19395890 (+)
LOC113541169 klhl34 coding downstream 133992 19884047 ~ 19887557 (+)
sh3kbp1 sh3kbp1,LOC107590295 coding downstream 300681 20050736 ~ 20112391 (+)
map3k15 map3k15,LOC107685453 coding downstream 365959 20116014 ~ 20152049 (+)
LOC113541177 NA coding downstream 414712 20164767 ~ 20167147 (+)
tfr1b NA coding downstream 423045 20173100 ~ 20188652 (+)
G334888 NA non-coding upstream 33051 19704685 ~ 19707006 (+)
G334806 NA non-coding upstream 150997 19561102 ~ 19589060 (+)
LOC117595782 NA non-coding upstream 217797 19521365 ~ 19522260 (+)
G334733 NA non-coding upstream 388305 19345889 ~ 19351752 (+)
G334575 NA non-coding upstream 806806 18933049 ~ 18933251 (+)
G335214 NA non-coding downstream 16415 19766470 ~ 19766826 (+)
G335215 NA non-coding downstream 17408 19767463 ~ 19768343 (+)
G335243 NA non-coding downstream 74648 19824703 ~ 19824911 (+)
G335345 NA non-coding downstream 215489 19965544 ~ 20029491 (+)
G335377 NA non-coding downstream 308319 20058374 ~ 20058822 (+)
cip2a kiaa1524 other upstream 36253 19636868 ~ 19703804 (+)
si:ch73-264p11.1 sh21b other upstream 56187 19678481 ~ 19683870 (+)
G334838 NA other upstream 162984 19576111 ~ 19577073 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other upstream 312121 19317857 ~ 19427936 (+)
LOC117595806 zfhx4,LOC107590192 other upstream 992580 18712048 ~ 18747477 (+)
G335231 NA other downstream 38528 19788583 ~ 19789058 (+)
smpx smpx,LOC107590224,LOC107663668,LOC107721880,LOC107705278,LOC107671350 other downstream 120326 19870381 ~ 19882836 (+)
camk2n2 camk2n2,LOC108256106,LOC107590228,LOC108443638,LOC103024774,LOC107586800 other downstream 235277 19985332 ~ 19988036 (+)
ccl20b NA other downstream 410212 20160267 ~ 20163106 (+)
mynn mynn other downstream 511813 20261868 ~ 20270565 (+)

Expression


Co-expression Network