jph1a (LOC108256670)


Basic Information

Item Value
gene id jph1a
gene name LOC108256670
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 14486970 ~ 14517787 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938139.2
cactctcccacacacacgcacacacacacacgcgcacacacgcccTCCAACCCTGCCAGCCGCCTCACATCCATCTTCACACTCTCCCgttcatgtttatttgtttatgtttatttattctccATCCGGGAAAAGAAgaacacactggaaaaaaaagaagacaaaaacagcaacaagaaggaaaaaaggattattattcatttctgaATGACGGGCGGCCGGTTCGACTTCGACGATGGCGGCACTTACTGCGGCGGCTGGGAGGGCGGGAAAGCGCACGGGCACGGCGTGTGCACGGGGCCGCGCGGCCAGGGCGAGTACAGCGGCGCGTGGTCTCACGGCTTTGAGATAGTCGGTGCGTATACATGGCCCAGCGGCAACACGTACCGGGGCTACTGGGCGCACGGCAAGCGGCACGGGCTCGGCGTGGAGCGCAAAGGACGCTGGGAGTACCGGGGTGAGTGGAGTCACGGGTTCAAGGGCCGTTACGGAGTCCGCCAGACCCGGGAGTCACCCGCCAGGTATGATGGCACCTGGAATAACGGACTGCAAGACGGATACGGGGTGGAAACCTACGAGGATGGGGGTACATATCAGGGTCAGTGGATGGGTGGGATGCGTCATGGTTACGGCGTGAGACAGAGCGTCCCGTACGGCATGGCCATGACCATTCGCTCCCCTTTGCGAACTTCTCTATCATCCCTACGAAGCATGCAGAGCAACGGTGCTGTGCTGCTGCAGGATGAGGCCTCTAACGTGCCAGCCAACACACGAGGTGGCTTTGTCTTAAATGTCcatggtgagaagaaaaaaCGTCCTTTGGTCCGGCGTGGATCACTGTTCGGAAGCCTTCGTCAGCTCCGGAAGTCCGAATCAAAAAGTTCGATTTCAAGCAAGCGCAGCTCAACACGCAGTTCTGCCATGAGCCGAATCAGCTCGAGCGACGCCGAGGACGAGGACAAGACGGACATTGAGGACAATGTTGACACCGAGGACAAAATGGACGCCACAGTCACTGAGTCCTATGCAGGCGAGTGGAAAAACGACAAGCGAAGCGGCATTGGAGTGAGCGAACGCTCTGATGGCACCAAATACGAAGGGGAGTGGTTGAACAACAAGCGGCACGGATACGGCTGCACCGTTTTTCAGGACGGAACCCGGGAAGAAGGGAAgtacaaaaataacacactggTCCGAGGGATAAAGAAGCAGCTCATTCCACTCAAAAATCCCAAAACCAAAGAGAAAGTAGACAGTGCAGTGGAGGGAGCGAGGAGAGCAGCCAATGTCGCCAGAACCAAAGTGGAAATCGCCCTGTCAAGgACAGCCCATGCCAGAACAAAGAGTGAATCAGCAGACCAGGCTGCAGTTGCTGCTGACCAGGAGTCAGATCTTGCAAGGGCTATAGCAAGAGAATTAGCTCCTGACTTCCAGCAaccagGCCTTGAGTACATCAAGCAAAACTTCACATACCATGTGGAGGAGATTAAAGAAGCTCCACTAGAGttggagaagaaggagaagaaagagaagtcTTCATCAGGCAGTCCTTTTTATCGCCGTGGCACGACTCCATCACACTCGCCTACTCACAGCCCGACTCCCTCACCTCCATTATCACCAACGAAGAAAAATCAACAACCAAGTACTGGTGTGACACGAAAGATCAGCAAAGAAAGTGCTACAGCAACCCGTAAAATTAGCAAAGACAACAGCACTCTATCCCGTAAGATTAGCAAAGATGAAAGAGCCACCATTGTAGCCGAAATTAGCAAAGTTCCTGCCATCAAAATTCAAGATACTGCACCACCAAAGCCGCCCAAGCTCAACGAACCATCAGTAAACGGCCAATTACACACTGCTTATCATAGCTATTATGtgaaaacacataaaaacatcCCTCCACCAGATGAACCGGAGGATGAAGAGCCTGAAATGACACAGTCCAGTTTAGCTCGAATGCCACCACCTCCAAAGATGGTGCGGTCACCCACGCCAAAACTAGAGACAAAGCTCAGGAAACAAGAAAGTGTAAAACCAAAGAGTCTCACTGAAACCAAGAAAGCCAGTGTGGAGTTCATGAATGAGGTGTTAGAAGATGATACGGGTCTGAATTCTATTTTAGTTGCCATGGTGATGCTCTTGAATATTGGATTGGCCATcatttttgtacactttttgACATGATTGCACTGTGTTTCAGTCATGGAAATAACACAGTGTTACGTTAAACTGGCGCTGGTCCTTGGCCGTGGGAGCAACAGAAGAAGTTTTGGAAAATAAGAACGCCTTTGGAGGACGACGTAACTTTTCATGGCTCGTTTAGCCGTGTAAAAGACTGACTGTTAGAAACAAA

Function

NR:

description
junctophilin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938139.2 True 2356 mRNA 0.51 6 14486970 14517787

Neighbor

gene id symbol gene type direction distance location
crispld1a LOC108256732 coding upstream 81208 14386961 ~ 14405762 (+)
cd226 NA coding upstream 177499 14297560 ~ 14309471 (+)
rttn rttn coding upstream 191199 14234044 ~ 14295771 (+)
cbln2b cbln2,cbln2b,LOC107657802,LOC107596058,LOC107741967 coding upstream 506781 13975240 ~ 13980189 (+)
mtrr mtrr coding upstream 1039222 13406164 ~ 13447748 (+)
LOC113541072 NA coding downstream 11877 14529664 ~ 14535320 (+)
zfhx2 NA coding downstream 26204 14543991 ~ 14564674 (+)
pabpn1 pabpn1,LOC108256547,LOC107758815,LOC107589928,LOC107596039 coding downstream 48005 14565792 ~ 14577243 (+)
xkr9 xkr9 coding downstream 197008 14714795 ~ 14721577 (+)
eya1 eya1,LOC107657823 coding downstream 278857 14796644 ~ 14848084 (+)
LOC117595809 NA non-coding upstream 524786 13958024 ~ 13962184 (+)
G331502 NA non-coding upstream 1104334 13380644 ~ 13382636 (+)
G331496 eif2s3,LOC102783563 non-coding upstream 1124268 13361369 ~ 13362702 (+)
G331498 NA non-coding upstream 1125952 13360280 ~ 13361018 (+)
G331468 NA non-coding upstream 1196571 13287447 ~ 13290399 (+)
G332111 NA non-coding downstream 170376 14688163 ~ 14703270 (+)
G332238 NA non-coding downstream 427204 14944991 ~ 14945212 (+)
G332248 NA non-coding downstream 438073 14955860 ~ 14956067 (+)
G332334 NA non-coding downstream 548188 15065975 ~ 15113514 (+)
G332348 NA non-coding downstream 684030 15201817 ~ 15202305 (+)
G331476 NA other upstream 1228554 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 1774292 12706939 ~ 12712678 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 2330183 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 2738411 11717415 ~ 11748559 (+)
G330257 NA other upstream 3512055 10973264 ~ 10974915 (+)
stau2 stau2,LOC107691439 other downstream 616566 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 733848 15251635 ~ 15265895 (+)
G332636 NA other downstream 1048388 15566175 ~ 15566663 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 2582377 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 2767295 17285082 ~ 17302004 (+)

Expression


Co-expression Network