urad (urad)


Basic Information

Item Value
gene id urad
gene name urad
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17432046 ~ 17434825 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938140.2
GTATTTCAATCATTTTTGGTTCAGAATATCAGATCAGGGCTGGCTGTATCAGTTTACACACATGTCCAGAACCAGTCTTTAGTATTTGAAATTTCAGGTAAGAGGATCACGTGGCTGACTTCTGCGTCATTAACACCACGCCCAGAAGAGGAGTGGTGTTATACACACGTATTCCTAGCTATAGCCCTGGTCGCAGTTGAATTGAAAAAGCCTGAACTGATAGGCTCCATTTTTGGAAGGACTCAAACTTTGTTGCTTGTCACTGGACTTTTGCAGCAGTTCATTAAATGCTGACTGGAAATGAAGACATAAAATTATGTGAGGAGCTCTACTCATTCAACAATCTTTGCACGTCGCCACCGGATTCTGGGCGCAGCATTCAGGAATTTCCAGTTTTCCCATAGTGCATTTCAGCAGTTAATATATTTCATTGGCTTTGGTGTCATACCTCTATGGCGCGGACCTGTGTTTGGCAGTGGCCAGTAGTTAAAGTGTATCTGATACCTGTCATTATCAAGCTCCAGTGCTCTAGTTTCAGAGGGAAGAACCATCCCAAATTCATTTCAGAAGTGACTCCAGGATCAAAGCCAGTTTTTAGTGTATCATTCTTTTGAGGATTGCTTATGCCCTGTTCTggcatgaaagaaagaaatgtagatGATTGTAAGCTACCGGGGACAATTTCTAGCCTCCACATTTTTATTAGAATAACAAGTTTTCACAGTGGAGTTTGCATGAGACATCATGGACATTAATGCTGTGAACGCACTCTCGTATGAGGACTTTTTGGAAATATTTGGGAACGTGATTGAGAAATGTCCCATCATCCCAGCTGCGATATGGATCCACCGTCCGTTCACAGGCCTAGCGGACATTGAGGCTCACATATCCGACTTCATCGACAGTCTACCTGAATCAGGTAAAGAAGGAATCCTCCGGTGCCACCCGGACCTGGCGGGCAGGGAGCTGCAGAGCGGCGCGTTAACCCAGGACTCGCAGGAGGAGCAGCGCGCGGCTGGCTTCACCGACCTGCAGCCTGCCGAGGTATCGCGCATGCGCAGCCTCAACTCCGAGTACAAGGAGCGCTTCGGCTTCCCGTTTGTCATCTGCGCGCGGCTGAACACCAGACAGGACATCATGCGCGAGCTGCTTCAGCGCCTCGGCAACGACCGTGCGGCGGAGAGAGCGCGCGCCATCGGCGAGGTGAAAAAGATTTGCGCGCTGCGACTGCGCAACCTCGTGCTGTCCGACTCCGCAAACAAGCTCTGAGGTGACGAGCTTTGCGTGAACTCTGCGTGAAAACGGAAGGAATGATCACGTATAATGTAGAATTTGCTTAGCatttacttttcttttatttgactGTGATCAGTGTGTCATTTATAATGCTTACAATGCATCATGTTCACAATTCATAATGCACAATAGATAGCCATAAAGTGttatgcattttcataaataatcagGACAACGTGTATATTGTATTTGAGAGTATTAaaacatgatatgaatgtgttcaCACTTCATTATGAATATGACTTTAATAGAAAAAGTTACCAAGTTATATAACTAATCACTcagggattttttaaaaatactttttttttgttttttaataaacaaaaatgtccaTATTTCAAACAGA
>XM_026938141.2
taattttgaATTGTTTCACTGTAACTCACATGTTATGATTATGTTTTAGTCCTCAAATGATCGGGGCTGACAAAGTATTGTTATGTCCTTCGTAAATCCAACAAAAGCTGATAATGTGATGGCCCCAGCCTTTCTTAGAATTAATTCTTGTCAGTCCTCTATCAAATACATTCATTTGGGATACAACCTAAATGTGTAGTGCACTGGATCCCCAAGAGTGAAATTAGGTAACACTCATCCTACTGGaactattattataatacagcAGCACTGTTAttatagaataataaaaatagcaaaactGGAATTCCATCAGGAAGTTTTTTTCAGAGAATTGAACTCAGTGATATCTGCATTTATGCTACTAGGTTAAATAATCTAGTACACAGCTAATAAGGACATTTGTCTGAACGGTCCTGTTTCTTTGGAAGCATTATTTAACTTGTCCCATTATTACTAAAAATTAAGTGACCCAAATTTTGGCCCTTGGGTGCTGAACTTAGTTTTTATTGGTAAAGGcacatgaacaaacaaaaggGGTTTGAAGTCTATGCTTCCAAGGCCATTAACCCTGCTTTAGTTTCCCCTCTAGTTTTCACAGTGGAGTTTGCATGAGACATCATGGACATTAATGCTGTGAACGCACTCTCGTATGAGGACTTTTTGGAAATATTTGGGAACGTGATTGAGAAATGTCCCATCATCCCAGCTGCGATATGGATCCACCGTCCGTTCACAGGCCTAGCGGACATTGAGGCTCACATATCCGACTTCATCGACAGTCTACCTGAATCAGGTAAAGAAGGAATCCTCCGGTGCCACCCGGACCTGGCGGGCAGGGAGCTGCAGAGCGGCGCGTTAACCCAGGACTCGCAGGAGGAGCAGCGCGCGGCTGGCTTCACCGACCTGCAGCCTGCCGAGGTATCGCGCATGCGCAGCCTCAACTCCGAGTACAAGGAGCGCTTCGGCTTCCCGTTTGTCATCTGCGCGCGGCTGAACACCAGACAGGACATCATGCGCGAGCTGCTTCAGCGCCTCGGCAACGACCGTGCGGCGGAGAGAGCGCGCGCCATCGGCGAGGTGAAAAAGATTTGCGCGCTGCGACTGCGCAACCTCGTGCTGTCCGACTCCGCAAACAAGCTCTGAGGTGACGAGCTTTGCGTGAACTCTGCGTGAAAACGGAAGGAATGATCACGTATAATGTAGAATTTGCTTAGCatttacttttcttttatttgactGTGATCAGTGTGTCATTTATAATGCTTACAATGCATCATGTTCACAATTCATAATGCACAATAGATAGCCATAAAGTGttatgcattttcataaataatcagGACAACGTGTATATTGTATTTGAGAGTATTAaaacatgatatgaatgtgttcaCACTTCATTATGAATATGACTTTAATAGAAAAAGTTACCAAGTTATATAACTAATCACTcagggattttttaaaaatactttttttttgttttttaataaacaaaaatgtccaTATTTCAAACAGA

Function

symbol description
urad Enables 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity. Predicted to be involved in urate catabolic process. Predicted to act upstream of or within allantoin biosynthetic process and purine nucleobase metabolic process. Predicted to be located in peroxisome. Orthologous to human URAD (ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase).

NR:

description
PREDICTED: putative 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase

GO:

id name namespace
GO:0006144 purine nucleobase metabolic process biological_process
GO:0019628 urate catabolic process biological_process
GO:0019428 allantoin biosynthetic process biological_process
GO:0005777 peroxisome cellular_component
GO:0016831 carboxy-lyase activity molecular_function

KEGG:

id description
K13485 PRHOXNB, URAD; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938140.2 True 1645 mRNA 0.44 3 17432046 17434825
XM_026938141.2 False 1522 mRNA 0.42 2 17432784 17434825

Neighbor

gene id symbol gene type direction distance location
ccdc191 ccdc191 coding upstream 41407 17378301 ~ 17390639 (+)
drd3 drd3 coding upstream 78737 17336192 ~ 17353309 (+)
si:ch211-161h7.8 LOC108256135 coding upstream 98537 17329834 ~ 17333509 (+)
fam162a NA coding upstream 116346 17310721 ~ 17315700 (+)
LOC113541297 LOC108256406 coding upstream 132656 17296573 ~ 17299390 (+)
lnx2a lnx2,lnx2a,LOC107716412,LOC107584972,LOC107701681,LOC107591221 coding downstream 15898 17450723 ~ 17466452 (+)
usp12a usp12,usp12a,LOC107705210,LOC107584971,LOC107591222,LOC107654221 coding downstream 48868 17483693 ~ 17492318 (+)
gpr12 gpr12,LOC107701646,LOC107716385,LOC107654195,LOC107705188 coding downstream 61252 17496077 ~ 17503703 (+)
atp8a2 atp8a2,LOC108438947,LOC107654223,LOC107716405,LOC107584968,LOC107732915 coding downstream 108998 17543823 ~ 17605193 (+)
spice1 spice1 coding downstream 187121 17621946 ~ 17629485 (+)
G333548 NA non-coding upstream 68971 17362871 ~ 17363075 (+)
G333360 NA non-coding upstream 245371 17186129 ~ 17186675 (+)
G333244 map3k20,LOC108439325,LOC108256334,LOC102795565,LOC101475626 non-coding upstream 534191 16893006 ~ 16897855 (+)
LOC113541357 NA non-coding upstream 541885 16888906 ~ 16890161 (+)
G333232 NA non-coding upstream 602067 16732916 ~ 16829979 (+)
G333582 NA non-coding downstream 11360 17446185 ~ 17447043 (+)
G333787 NA non-coding downstream 232811 17667636 ~ 17667844 (+)
G333791 NA non-coding downstream 235591 17670416 ~ 17670625 (+)
G333779 usf3 non-coding downstream 272897 17707722 ~ 17712380 (+)
G333795 NA non-coding downstream 306576 17741401 ~ 17756282 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other upstream 130042 17285082 ~ 17302004 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other upstream 322019 17100164 ~ 17110027 (+)
G332636 NA other upstream 1865383 15566175 ~ 15566663 (+)
stau2 stau2,LOC107691439 other upstream 2117078 15134353 ~ 15314968 (+)
rnf6 rnf6,LOC106590444 other downstream 101119 17535944 ~ 17542387 (+)
pan3 pan3,LOC107705213 other downstream 326706 17761531 ~ 17796521 (+)
G333943 LOC108256468 other downstream 551937 17986762 ~ 17993014 (+)
mtfr1 mtfr1 other downstream 880529 18315354 ~ 18323295 (+)
mcmdc2 mcmdc2 other downstream 1033053 18467878 ~ 18486009 (+)

Expression


Co-expression Network