atp6v1ab (atp6v1a,atp6v1ab,LOC107599937,LOC107687683,LOC107591235,LOC107716398,LOC107654231)


Basic Information

Item Value
gene id atp6v1ab
gene name atp6v1a,atp6v1ab,LOC107599937,LOC107687683,LOC107591235,LOC107716398,LOC107654231
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17727853 ~ 17739585 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938142.2
TGTGTGAATGAGTTCCTGTTTCTGAAGCACCGTCGAGTGAATGAAGTCAGCTGATCTGTGCTCCTATTCGCATTATTTCTCATCTTTTTCCCCCCAGAAGCGTGAATCAGGAATTCTCTCCGATTCTTCACATCATTTCagACACACACCTCTAACATGGACTTCTCCAAGCTGCCCAAGATTCGAGATGAGGAGCGAGAGGGACATTTTGGATATGTACACGGCGTCTCCGGACCTGTGGTGACGGCTTCCAGCATGGCCGGGGCTGCGATGTATGAGCTGGTGCGTGTGGGCCACAGTGAGCTGGTGGGAGAAATCATCCGGCTAGAGGGAGACATGGCCACCATTCAGGTGTACGAAGAAACCTctggagtgtgtgttggtgaccCGGTCCTGCGTACAGGGAAGCCCCTCTCCGTCGAACTGGGACCCGGCATCATGGGCTCCATCTTTGACGGTATCCAGCGCCCGAAAGACATCAATGACTTGACCAAGAGCATTTACATCCCTCGAGGCGTGAACATCGGTGCCCTCAACCGCGACATCAAATGGGAGTTCTCACCTTCCAAGAGTTTGCGGGTCGGGAGTCACATAACTGGAGGAGACATCTATGGTCTTGTGTACGAGAACTCTCTTATTAAACACAAAATCATGCTGCCACCCAAAAACCGTGGTACTGTCACCTATGTGGCACCTCCTGGCAACTATGACGTCTCGgatGTGGTGCTGGAGCTGGAGTTTGAGGGGGTGAAGGAGAAGTTCACCATGGTGCAGGTTTGGCCTGTGCGCCAGGTCCGACCCGTTACTGAGAAGCTGCCCGCTAATCATCCTCTGCTAACCGGCCAGCGAGTGTTGGACGCCCTTTTCCCGTGTGTAcaaggaggaactacagccaTCCCAGGGGCTTTTGGATGTGGCAAAACCGTGATCTCTCAGTCCTTGTCCAAATACTCCAACAGTGACGTCATCATCTACGTGGGCTGTGGAGAGCGAGGTAACGAGATGTCAGAAGTACTGCGAGACTTCCCTGAGCTAACCATGGAGGTGGATGGGAAGGTGGAAAGCATCATGAAGAGAACAGCTCTGGTGGCCAACACCTCCAACATGCCCGTGGCTGCTCGAGAGGCGTCCATTTACACAGGAATCACTCTGTCTGAGTACTTCAGGGATATGGGTTACAACGTGAGCATGATGGCTGACTCCACGTCTCGATGGGCCGAGGCTCTCAGGGAGATCTCTGGTCGTCTGGCCGAGATGCCTGCTGATAGCGGCTATCCTGCCTATCTGGGAGCTCGTCTGGCCTCGTTTTATGAGCGTGCCGGCCGTGTGAAATGTCTCGGTAATCCTGAGAGGGAAGGCAGTGTTAGCATCGTGGGAGCtgtgtcaCCCCCTGGTGGAGATTTCTCCGATCCTGTGACATCTGCTACACTAGGTGTTGTACAGgtgTTCTGGGGTCTAGATAAGAAGCTGGCCCAGAGGAAGCATTTCCCGTCTGTAAACTGGCTGATCAGCTACAGTAAGTACACAAGAGCACTGGATGAATACTACGACAAGCACTTCCCCGAGTTTGTGCCACTGCGCACCAAAGCTAAGGAGATTctgcaggaggaagaggaccTGGCTGAGATTGTACAGCTTGTTGGCAAGGCTTCCTTGGCTGAGACAGATAAGATCACCCTTGAAGTTGCCAAGCTGATTAAGGATGATTTCCTGCAGCAGAATGGTTACACACCTTATGACAGGTTCTGTCCGTTCTACAAGACAGTGGGCATCCTGTCGAACATGATTTCCTTCTACGACATGGCACGGCACGCAGTAGAGACCACCGCTCAGAGCGATAACAAGATCACCTGGGCCATGATCCGTGAGCACATGGGCGAGATCCTCTACAAGATCAGCTCCATGAAATTTAAGgaCCCTGTGAAGGAGGGAGAGGCGAAGATTAAAGCTGATTACGCGCAGCTGCTTGAGGACATGCAGAACGCTTTCCGTACGCTGGAGGACTAGGTCCCTTGCGGTGTCCATCAGCTGAATTcagctgtctttctctttctgtcttcgCTCCATCCAGCAACATTCCAATTCTTTCTTTTCACCCTTCCTCTTATGGAGCAGCAGTAGAAGATAGTGTTTTGTCAAGAACCTcctccattttgtgtgtgtgtgagtgtgttgtcgttggttgtgtttgtgtttttgtgagtgTTCCAGgcgtatttttcttttttcatacaCCACTCTACTGCCTCATCCtccagtgttgttgtttttttgtttcgtttttGAGATGGCTAGCTGTAGATTTCCTTCTGGTGTAATTATCATTCCAATGTTCTCTGTACAGACAATTTGAGGGATGTGATGAATTAAACGGAGATACTATTTATTGCTCGGAGCTCTGGTGGTTGCTTGTGTTGTTCTTCGGTTCTGTTTTAAACTGTATTATCCCATAAAGCCGCGGTGTAATATAATCGGGGCATCGCACTTCTCTCGTGCACTGCTTTTGTGACAGTGTTGAAGTCctgcaacaataaaataataacgtATGTGTaagttttaatgtttatgtgaGTGATTCATACATCAGTGAAACAGGGTGCATGATAATGTATTTTACATGACTACTGTGGCGAAATCACTGTAATAAAAGgtgaaaatacaaatacaatactGAGGCAATTCCACCAGGGGAGCGACACAAATTATAGACAAATCATGGAAGAATAGTCACTAATAGTCCATGTCTGGAATAAAAAATTGTCTGGAAAA

Function

symbol description
atp6v1ab Predicted to enable proton-transporting ATPase activity, rotational mechanism. Predicted to be involved in proton transmembrane transport. Predicted to act upstream of or within ATP metabolic process and ion transport. Predicted to be located in apical plasma membrane. Predicted to be part of proton-transporting V-type ATPase, V1 domain. Is expressed in several structures, including integument ionocyte; lateral line ganglion; neural crest; yolk; and yolk syncytial layer. Human ortholog(s) of this gene implicated in autosomal recessive cutis laxa type IID and developmental and epileptic encephalopathy 93. Orthologous to human ATP6V1A (ATPase H+ transporting V1 subunit A).
atp6v1a Predicted to enable proton-transporting ATPase activity, rotational mechanism. Involved in cellular iron ion homeostasis and cellular response to increased oxygen levels. Located in cytosol; nucleoplasm; and secretory granule. Part of vacuolar proton-transporting V-type ATPase, V1 domain. Implicated in autosomal recessive cutis laxa type IID and developmental and epileptic encephalopathy 93.

NR:

description
V-type proton ATPase catalytic subunit A

GO:

id name namespace
GO:0046034 ATP metabolic process biological_process
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0005524 ATP binding molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02145 ATPeV1A, ATP6A; V-type H+-transporting ATPase subunit A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938142.2 True 2769 mRNA 0.49 16 17727853 17739585

Neighbor

gene id symbol gene type direction distance location
boc boc coding upstream 21735 17678898 ~ 17706118 (+)
LOC113541191 cfap44 coding upstream 74240 17636383 ~ 17653613 (+)
spice1 spice1 coding upstream 98368 17621946 ~ 17629485 (+)
atp8a2 atp8a2,LOC108438947,LOC107654223,LOC107716405,LOC107584968,LOC107732915 coding upstream 122660 17543823 ~ 17605193 (+)
gpr12 gpr12,LOC107701646,LOC107716385,LOC107654195,LOC107705188 coding upstream 224150 17496077 ~ 17503703 (+)
chodl chodl coding downstream 202843 17942428 ~ 17951626 (+)
zgc:112408 zgc:112408,LOC108256202,LOC108438348,LOC107721840 coding downstream 221403 17960988 ~ 17963471 (+)
lipib LOC108256469,LOC108438884,LOC107721863,LOC107705251,LOC107590204 coding downstream 233619 17973204 ~ 17983420 (+)
ythdf3 ythdf3,LOC107666630,LOC107705256 coding downstream 348062 18087647 ~ 18097915 (+)
bhlhe22 bhlhe22 coding downstream 475278 18214863 ~ 18217206 (+)
G333779 usf3 non-coding upstream 15473 17707722 ~ 17712380 (+)
G333791 NA non-coding upstream 57228 17670416 ~ 17670625 (+)
G333787 NA non-coding upstream 60009 17667636 ~ 17667844 (+)
G333582 NA non-coding upstream 280810 17446185 ~ 17447043 (+)
G333548 NA non-coding upstream 364778 17362871 ~ 17363075 (+)
G333795 NA non-coding downstream 1816 17741401 ~ 17756282 (+)
G333797 NA non-coding downstream 16740 17756325 ~ 17756542 (+)
G333798 NA non-coding downstream 16973 17756558 ~ 17756798 (+)
G333799 NA non-coding downstream 18139 17757724 ~ 17757929 (+)
G333801 LOC108256577,LOC108442200 non-coding downstream 110210 17849795 ~ 17850795 (+)
rnf6 rnf6,LOC106590444 other upstream 185466 17535944 ~ 17542387 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other upstream 425849 17285082 ~ 17302004 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other upstream 617826 17100164 ~ 17110027 (+)
G332636 NA other upstream 2161190 15566175 ~ 15566663 (+)
si:ch73-173p19.2 LOC108256301 other upstream 2461958 15251635 ~ 15265895 (+)
pan3 pan3,LOC107705213 other downstream 21946 17761531 ~ 17796521 (+)
G333943 LOC108256468 other downstream 247177 17986762 ~ 17993014 (+)
mtfr1 mtfr1 other downstream 575769 18315354 ~ 18323295 (+)
mcmdc2 mcmdc2 other downstream 728293 18467878 ~ 18486009 (+)
G334373 NA other downstream 953564 18693149 ~ 18717953 (+)

Expression


Co-expression Network