msrb2 (msrb2,LOC107735060)


Basic Information

Item Value
gene id msrb2
gene name msrb2,LOC107735060
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13336338 ~ 13341661 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938148.2
ATCAACTTTAACCTACAAGCATTATCAGCCATAAACAAGGTTTTGACCATTGGATGTTGGATGAGGGAGGGAATGTAAGTCAAGTAACAGTGAAAAACTCAATTCAGTTCCCCCAGGTTCATTCACTGAGCATTAATTCAGCTTGTGTCTGGTGTAAAAGTCTGCATGGAAACATGGCACGTCTCCTGGTGCGACTTTCTTCTGTACTTTACAATGGAGCTTCCACACAGTCGGTTTTGTCTAAGAGCCGGGCTCTGCTGAACCGACCACTAGGCACAGCAACAGATCTTCTTTCTTTGACACGTTATGATGAGTGTGTGGACTGGAAGAAGAAACTAACTCCAGAACAGTATGTAGTCACTAGAGAGAAAGGGACTGAGGTGCCATTCAGTGGAATCTATCTGAACCATAATGATGTGGGCATGTATCACTGTGTGTGCTGCGACACACCACTCTTCAGCTCTGAATCAAAATACAACTCTGGAACGGGGTGGCCATCTTTCTTTGAGGCTCATGGGACATGGGAGAGAGACGAGAGTCATGCCAACATCATCCGCAGACCTGATAACTCGTTAGGAAGCCCGGGAACAGAAGTCATCTGCAAACAGTGTGATGCCCATCTCGGCCATGTGTTCGATGACGGCCCGGATCCAACAGGCCAGAGATTCTGCATAAACAGCGCAGCTCTGAACTTCAAGCCCAGAGAAAACTAATTCAATCTCATAGACAAACACATTTCTCATTTCCCATCCACAGCTGCAAGTGATCAGAGTCTGAATGAATTGTGGAGAACTGGATGTCACCGACATGCTGATATCTGAGAACGAATATGTGCTTCAGTCAGACTGGTTTAATTATGCCCTTTTCTGTCTatgtttaatgcatttttaccTTCCTGGGTCTGTCAGAAGTGATTTAAAGAACAAATGAACGCAGGAATGTTCAAGATCTCATGTTCTGCTTTTAGTCATAATTCAAACAGAACATGTCTTTTCTAAACTTTTTGGCTAAAAAGCCCTGGCATTGCTTTATGTAGAAAAAAGGGAAGGTATTTAGGGTCACTAGACATGTCACGACCATTTTTTCCAACTTTCCAGCATGGCTGCTGTTGACGGACTGGAAAATGATGTATATAACAGTGAAAGAGGTCAAAAGGTTAGAATTATGTTTACAATTTTACCCTTTTTGTTCTGCTCAATTAATGGTATTTAATGGGCTGCGATTCCACAGGGTCCTGAGGTGCCtacaaattgtaaaataaagctAACTATCAACATAACAACATTGCATTAAAGTCTGGGGGAAATTAAATATTGCAAT

Function

symbol description
msrb2 Predicted to enable actin binding activity and peptide-methionine (R)-S-oxide reductase activity. Predicted to be involved in actin filament polymerization. Predicted to act upstream of or within protein repair and response to oxidative stress. Predicted to be located in mitochondrion. Predicted to be active in cytoplasm. Orthologous to human MSRB2 (methionine sulfoxide reductase B2).

NR:

description
methionine-R-sulfoxide reductase B2, mitochondrial-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0030041 actin filament polymerization biological_process
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0033743 peptide-methionine (R)-S-oxide reductase activity molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K07305 msrB; peptide-methionine (R)-S-oxide reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938148.2 True 1320 mRNA 0.42 5 13336338 13341661

Neighbor

gene id symbol gene type direction distance location
armc3 armc3 coding upstream 1813 13322337 ~ 13334525 (+)
skida1 skida1 coding upstream 58313 13274660 ~ 13278025 (+)
cul1b cul1,LOC107686696,LOC107595130,LOC107727219,LOC107741709,LOC107695409 coding upstream 293822 13021167 ~ 13042516 (+)
LOC113541231 cntnap2,cntnap2a,LOC108256453,LOC108256478,LOC108256479 coding upstream 321229 12766560 ~ 13015109 (+)
ccl34b.4 LOC100304628 coding upstream 623687 12710626 ~ 12712651 (+)
c8g NA coding downstream 2085 13343746 ~ 13350216 (+)
klhl15 klhl15,LOC107727232,LOC107695400,LOC107686713 coding downstream 31903 13373564 ~ 13379652 (+)
trnat-agu_17 NA coding downstream 43540 13385201 ~ 13385274 (+)
cmbl cmbl coding downstream 44413 13386074 ~ 13396461 (+)
mtrr mtrr coding downstream 64503 13406164 ~ 13447748 (+)
G331468 NA non-coding upstream 45939 13287447 ~ 13290399 (+)
G331487 NA non-coding upstream 61927 13274127 ~ 13274411 (+)
G331486 NA non-coding upstream 62297 13273743 ~ 13274041 (+)
G331482 NA non-coding upstream 66696 13269427 ~ 13269642 (+)
G331480 NA non-coding upstream 71752 13264349 ~ 13264586 (+)
G331498 NA non-coding downstream 18619 13360280 ~ 13361018 (+)
G331496 eif2s3,LOC102783563 non-coding downstream 19708 13361369 ~ 13362702 (+)
G331502 NA non-coding downstream 38983 13380644 ~ 13382636 (+)
LOC117595809 NA non-coding downstream 616363 13958024 ~ 13962184 (+)
G332111 NA non-coding downstream 1346502 14688163 ~ 14703270 (+)
G331476 NA other upstream 77922 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 623660 12706939 ~ 12712678 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 1179551 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 1587779 11717415 ~ 11748559 (+)
G330257 NA other upstream 2361423 10973264 ~ 10974915 (+)
stau2 stau2,LOC107691439 other downstream 1792692 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 1909974 15251635 ~ 15265895 (+)
G332636 NA other downstream 2224514 15566175 ~ 15566663 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 3758503 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 3943421 17285082 ~ 17302004 (+)

Expression


Co-expression Network