ctdspla (ctdspl,ctdspla,LOC107701658,LOC107584947)


Basic Information

Item Value
gene id ctdspla
gene name ctdspl,ctdspla,LOC107701658,LOC107584947
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17030860 ~ 17073642 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938152.2
CTAGAGGCAGGAGCTGGAACTGCACCCAAACTGACACCCAGCACAAATGCGACTGTtattttctttagatttttattatatggAGCTGAGATTATGAGATGCTCCtgattttatcatttaacaGAGAATATTTTATTCTCACAGGATTTTACATGAATGCAAAGTGGACTCTGATGTGAGAGAGAGGTAGacacagggctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcacatcgGGACAGTCTTGGCTAGCTCGCTAGCAGGCAGGGCTAGCTGCTGCATATTCCAGTGAAGCAGGCGACTTAAAGAGAGGACTTGTtcttgaaataacaagaaaacaatCCCGTTTCCATGGACAACACGTCCATCATTACCCAGGTAGCAAATCCAAAGGAGGAGGAAATCATTTCTTCGAGTCAAGAAAAAGTCTTGCAGTCGAACAGCAGCTTAAAGAAACACAGGAGCAGGAGCATCTTCAGCCCTTTCTTCTGCTGCTTCCGCAACTACAATGTGGACCCGCCGCTTCAGAACAACAAGACGTGTTCGCTGCCTCCACCTGCTGAGGAGAACAGCGGCTCTCCTAAgTGTGATCAGGTCCAGGTCATCCCTATCCccagtTCTCCAGCCAAATACCTCCTACCTGAAGTCAGCATCACGGACTACGGCAAGAACTGCGTGGTGATCGACCTCGACGAGACCCTGGTACACAGCTCCTTTAAGCCCATCAGCAATGCAGATTTCATCGTTCCTGTGGAAATCGATGGAACGGTCCATCAGGTCTACGTGTTAAAGAGACCTCATGTGGACGAGTTTCTGCAGAAGATGGGTGAACTGTTCGAATGTGTGCTCTTCACAGCCAGCTTAGCTAAGtatgcTGACCCCGTGGCAGATCTGCTCGATCAGTGGGGTGTGTTTCGTGCGCGCCTCTTCAGGGAATCCTGCGTGTTCCACCGAGGGAACTACGTCAAAGACCTCAGCCGGCTGGGCCGACAACTCAGCAAAGTGATCATAGTGGACAACTCGCCCGCCTCGTACATCTTCCACCCGGAGAACGCCgtCCCGGTGCAATCATGGTTTGATGACATGACAGACACGGAGCTGCTGGACTTGCTGCCTCTGTTTGAGGGTCTGAGCAGAGAGCAGGACGTTTACAGCGTGTTACAGAGCCTGAGGGCCAGGtagcactgacacacacttacGATTCAGAGACTATACGGCTCTACCAGAAACACACTCCAGCATCGCTGGTCAGGCCAAGCTGATGCCTCTAGACGGCGCTACTGTCTCACACAGGGGAGGACGGATGGTTCACCTAAGTGGACAAACCCTTCGTGTGCAGTCTGAATATTATCGGACCGTATGCCACCCAGAGACACAGAAAATGTGTACATAGCATATGTTTCTAAACTTGCCGGAGAACAAGAAAGAATTTTTGTAAGTTTCGACTTTACAATCCTAAAGTTAAATATATACcagaaaacaaggaaaaagaCATGTTACGGAGGGTTTGGAAGATGCTGTAGCGACTCGACCCTTCGGTTCATGCTATGCAGACAGTCATTTCTCGATCAGCAGTCTCCCCAACTGTGATTTTTCTCTTACCTAAAGAAAGTGCCTTCTGAACGTTTTTATGAACACATAAGCGACATTTTTATATGCTGCGTATTTCCAGACCTTTAATCAAATATTTGCTGTAAACCCAAGTGGACAGACAAGCCTTTATTttaacactgtttatttatttttcttttccccagTGATTTCCTCCAGTCGTCATTGAGCTAAATGAACTGTGATTGGAAAAAACAGACCTTtctctggttttatttttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcatatgagcATTGTGTTGATGGGAAAAATCCTGATTAGCATCTAACTGCAATTTGAGTAAATGACATGGAAACTGTTAATCAGCACTcaaatacaatacagtatgaGCATTTATGAGCATTTACCAGAATCTAAATAAATGTTGCAATCGATATCAGACATGGCTCAAAGGTTATCGTCTTTTAAACCCCCCATAGAGGAAGCAGAATATAAGGTTTACAGTTTACACATCTGCCATGTTCTCTTTTGGTAAACTCTTCAGTAGTACAGACTAAAACAAGGTTCAAATtgagatttgtttgtttgtttttgtttatatttgaggGGAggataaatgttatttatttagttgtttgtttgtttgtttatccatCCTTGAGGGAAGAatacttgtttttgtttgtttatttgcttgtttatccatccatctttgAGTgacagatttgtttgtttgtttgtttgttcgttcattgatgttttttttttttctcacaatttaCAAGGACGTAAAATCTTACAAGGCCACAGAGTTATAGATAATAGGTAAATATGTAAATTGATGtagtgtacattttatccatttatagttacatatattGTTGCTGAACGTACGTGAAGTGCGCTACATTTCCCACGTAAAATTCCCACGTATTAAATTCTCTTGAAAATCACTGTTTGTTATGAtagaaagtcctctgtcctgaagacgtaaCTGTGGTGAAAAGTTTATGGTTACAAATATGGAGACttcatcaccacatcaacgattatatgcTTTTCCCTTGTTAaataacgtttttttttattcgtggCAAGTGATCATGCTCAAGTGACATGATACAATAAAATTGTACTGTTTCATGGTTTGAAAATCAAA
>XM_026938154.2
CTAGAGGCAGGAGCTGGAACTGCACCCAAACTGACACCCAGCACAAATGCGACTGTtattttctttagatttttattatatggAGCTGAGATTATGAGATGCTCCtgattttatcatttaacaGAGAATATTTTATTCTCACAGGATTTTACATGAATGCAAAGTGGACTCTGATGTGAGAGAGAGGTAGacacagggctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcacatcgGGACAGTCTTGGCTAGCTCGCTAGCAGGCAGGGCTAGCTGCTGCATATTCCAGTGAAGCAGGCGACTTAAAGAGAGGACTTGTtcttgaaataacaagaaaacaatCCCGTTTCCATGGACAACACGTCCATCATTACCCAGGTAGCAAATCCAAAGGAGGAGGAAATCATTTCTTCGAGTCAAGAAAAAGTCTTGCAGTCGAACAGCAGCTTAAAGAAACACAGGAGCAGGAGCATCTTCAGCCCTTTCTTCTGCTGCTTCCGCAACTACAATGTGGACCCGCCGCTTCAGAACAACAAGACGTGTTCGCTGCCTCCACCTGCTGAGGAGAACAGCGGCTCTCCTAAgTCTCCAGCCAAATACCTCCTACCTGAAGTCAGCATCACGGACTACGGCAAGAACTGCGTGGTGATCGACCTCGACGAGACCCTGGTACACAGCTCCTTTAAGCCCATCAGCAATGCAGATTTCATCGTTCCTGTGGAAATCGATGGAACGGTCCATCAGGTCTACGTGTTAAAGAGACCTCATGTGGACGAGTTTCTGCAGAAGATGGGTGAACTGTTCGAATGTGTGCTCTTCACAGCCAGCTTAGCTAAGtatgcTGACCCCGTGGCAGATCTGCTCGATCAGTGGGGTGTGTTTCGTGCGCGCCTCTTCAGGGAATCCTGCGTGTTCCACCGAGGGAACTACGTCAAAGACCTCAGCCGGCTGGGCCGACAACTCAGCAAAGTGATCATAGTGGACAACTCGCCCGCCTCGTACATCTTCCACCCGGAGAACGCCgtCCCGGTGCAATCATGGTTTGATGACATGACAGACACGGAGCTGCTGGACTTGCTGCCTCTGTTTGAGGGTCTGAGCAGAGAGCAGGACGTTTACAGCGTGTTACAGAGCCTGAGGGCCAGGtagcactgacacacacttacGATTCAGAGACTATACGGCTCTACCAGAAACACACTCCAGCATCGCTGGTCAGGCCAAGCTGATGCCTCTAGACGGCGCTACTGTCTCACACAGGGGAGGACGGATGGTTCACCTAAGTGGACAAACCCTTCGTGTGCAGTCTGAATATTATCGGACCGTATGCCACCCAGAGACACAGAAAATGTGTACATAGCATATGTTTCTAAACTTGCCGGAGAACAAGAAAGAATTTTTGTAAGTTTCGACTTTACAATCCTAAAGTTAAATATATACcagaaaacaaggaaaaagaCATGTTACGGAGGGTTTGGAAGATGCTGTAGCGACTCGACCCTTCGGTTCATGCTATGCAGACAGTCATTTCTCGATCAGCAGTCTCCCCAACTGTGATTTTTCTCTTACCTAAAGAAAGTGCCTTCTGAACGTTTTTATGAACACATAAGCGACATTTTTATATGCTGCGTATTTCCAGACCTTTAATCAAATATTTGCTGTAAACCCAAGTGGACAGACAAGCCTTTATTttaacactgtttatttatttttcttttccccagTGATTTCCTCCAGTCGTCATTGAGCTAAATGAACTGTGATTGGAAAAAACAGACCTTtctctggttttatttttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcatatgagcATTGTGTTGATGGGAAAAATCCTGATTAGCATCTAACTGCAATTTGAGTAAATGACATGGAAACTGTTAATCAGCACTcaaatacaatacagtatgaGCATTTATGAGCATTTACCAGAATCTAAATAAATGTTGCAATCGATATCAGACATGGCTCAAAGGTTATCGTCTTTTAAACCCCCCATAGAGGAAGCAGAATATAAGGTTTACAGTTTACACATCTGCCATGTTCTCTTTTGGTAAACTCTTCAGTAGTACAGACTAAAACAAGGTTCAAATtgagatttgtttgtttgtttttgtttatatttgaggGGAggataaatgttatttatttagttgtttgtttgtttgtttatccatCCTTGAGGGAAGAatacttgtttttgtttgtttatttgcttgtttatccatccatctttgAGTgacagatttgtttgtttgtttgtttgttcgttcattgatgttttttttttttctcacaatttaCAAGGACGTAAAATCTTACAAGGCCACAGAGTTATAGATAATAGGTAAATATGTAAATTGATGtagtgtacattttatccatttatagttacatatattGTTGCTGAACGTACGTGAAGTGCGCTACATTTCCCACGTAAAATTCCCACGTATTAAATTCTCTTGAAAATCACTGTTTGTTATGAtagaaagtcctctgtcctgaagacgtaaCTGTGGTGAAAAGTTTATGGTTACAAATATGGAGACttcatcaccacatcaacgattatatgcTTTTCCCTTGTTAaataacgtttttttttattcgtggCAAGTGATCATGCTCAAGTGACATGATACAATAAAATTGTACTGTTTCATGGTTTGAAAATCAAA

Function

symbol description
ctdspla Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Orthologous to human CTDSPL (CTD small phosphatase like).
ctdspl Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Predicted to be involved in protein dephosphorylation. Predicted to act upstream of or within negative regulation of G1/S transition of mitotic cell cycle and negative regulation of protein phosphorylation. Located in extracellular exosome.

NR:

description
PREDICTED: CTD small phosphatase-like protein isoform X1

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938152.2 True 2750 mRNA 0.42 8 17030860 17073642
XM_026938154.2 False 2717 mRNA 0.42 7 17030860 17073642

Neighbor

gene id symbol gene type direction distance location
vill vill coding downstream 1967 17015624 ~ 17028893 (-)
dlec1 dlec1 coding downstream 41824 16960853 ~ 16989036 (-)
map3k22 map3k20,LOC108256334,LOC108439325,LOC107758305,LOC107670426,LOC107741004,LOC107701654 coding downstream 78795 16892984 ~ 16952065 (-)
slc22a13b slc22a13 coding downstream 201475 16820229 ~ 16829385 (-)
LOC113541039 LOC108256133 coding downstream 228889 16795010 ~ 16801971 (-)
nktr nktr,LOC107670423 coding upstream 68819 17142461 ~ 17161207 (-)
si:ch211-161h7.4 LOC108256371 coding upstream 192614 17266256 ~ 17276128 (-)
si:ch211-161h7.5 LOC108256129 coding upstream 203762 17277404 ~ 17281623 (-)
ccdc58 ccdc58,LOC107733097,LOC107701664 coding upstream 231513 17305155 ~ 17309921 (-)
kpna1 kpna1,LOC107591240,LOC107754951,LOC107733038 coding upstream 242878 17316520 ~ 17329657 (-)
G333452 NA non-coding downstream 163 17030465 ~ 17030697 (-)
G333417 NA non-coding downstream 22127 17007827 ~ 17008733 (-)
G333434 acaa1 non-coding downstream 75397 16953725 ~ 16955463 (-)
G333429 NA non-coding downstream 139033 16891437 ~ 16891827 (-)
G333428 NA non-coding downstream 139496 16891128 ~ 16891364 (-)
G333470 NA non-coding upstream 12241 17085883 ~ 17086204 (-)
G333525 NA non-coding upstream 212111 17285753 ~ 17301996 (-)
G333527 NA non-coding upstream 219733 17293375 ~ 17298446 (-)
G333649 NA non-coding upstream 304654 17378296 ~ 17378572 (-)
G333650 ccdc191 non-coding upstream 307213 17380855 ~ 17381236 (-)
myd88 myd88 other downstream 141436 16885151 ~ 16889424 (-)
oxsr1b oxsr1,oxsr1b other downstream 150976 16829790 ~ 16879884 (-)
cpa6 cpa6,LOC106579545 other downstream 717944 16281271 ~ 16312916 (-)
sec61g NA other downstream 1412018 15615498 ~ 15618842 (-)
LOC113541115 kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 other downstream 1965050 14962837 ~ 15065810 (-)
zbtb47b zbtb47,znf652,LOC108256615 other upstream 42456 17116098 ~ 17139685 (-)
vipr1b vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 other upstream 111882 17185524 ~ 17239116 (-)
LOC113541127 LOC108256571 other upstream 833942 17907584 ~ 17908812 (-)
c22h11orf65 c23h11orf65 other upstream 835682 17909324 ~ 17916556 (-)
zmp:0000000991 NA other upstream 842442 17916084 ~ 17931814 (-)

Expression


Co-expression Network