klhl15 (klhl15,LOC107727232,LOC107695400,LOC107686713)


Basic Information

Item Value
gene id klhl15
gene name klhl15,LOC107727232,LOC107695400,LOC107686713
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13373564 ~ 13379652 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938162.2
CTTCCGGTCGCCCGGATCTTCTGCAGGAAATGACGTCAGTGCAGACAATAATATGGCCTCTAGAATGGCTGGAAAGGCTGCAGGCAAACATAATGTTGTAATTCCGTGAAAGTAACGTTGGTTTGTTGGCACGCAGGGTCGCGTACGGACGAGATGTCAGCACCGATCATGATTTTTTTACCTCCAGTCTTTCTGATCTCTAAAACAGTTTAATCAGCGGCCCTCCATGTCAGAAGGATCCCGGGCTCCGTGGTCGAAGCGGGGTTGTGTGGAGTCGCATCGCCGAGAACAGGGGAAACACAAGCAAAGGAAATGTGAGCGTCCTCTCAGCACACTGACAGCGAAGCCGCCGACCGGCCAGGAGGCCTCCAAAAGGTGCTTAATGGCTGGGGACGTTGAGGTGTACCTGTCACAGGTGCATGATGGGAGCGTGTCCTCGGGCTTCCGAGCCTTGTATGAGGAACGCCTCCTGCTGGATGTGACACTCCTGATAGAAGAGCATCACTTCCAGGCCCACAAAGCTCTGCTGGCCACACAGAGTGACTACTTCCGGGTCATGTTCACGGCAGATATGCGGGAGCGTGACCAGGACAAGATCCATATGAAGGGGCTGACAGCGGCTGGCTTCGGCCACGTCCTTCGCTTCATGTATTATGGCTCGTTGGAACTCAGCATGCCCACAGTGCAGGAGATTCTGCAGGCGGCCATGTATGTGCAGCTCACCGAGGCTGTGGAGTTCTGCTGCTCTTTCCTGTTAGCCAAAATCTGCTTGGAGAACTGTGCTGAGGTCATGAGGTTGCTGGATGATTTCAGTGTGGCTGTAGAGGGAGTGCAGGAGCGGCTGGACGCCTTCCTGCTGGAGAACTTTGTGCCTCTGATGGCCAGGCCAGACTTTTTGTCCTACTTGAGCCTGGAGAAGCTAGTGGTGTGCCTGGGCAGTGAGAGGCTGAGTCGGTTCCCGGAGATTGAGCTGTATGAGGCTGTACAGGCTTGGCTCAGACATGACCGACGCCGCTGGAGACACACGGACGCTGTGGTGCAGAACCTGCGCTTCGGTCTCATGACACCAACACAAGTGTTTGAAAAGGTGAAGACCTCCGAGTTCTATCGTTACTCCCGTCAGCTGAGGCAGGAAGTGGACCAGGCACTCAACTACTTTCACTCGGTGAATGAGCAGCCGCTAGCCGAGACAAAGTCCAACCGGATCCGATCTGTTCGGCCTCAGACAGCTGTGTTCAGAGGGATGATCGGTCACAGCATGGTGAACAGCAAGATCCTCCTGCTGCATCGGCCCAAGGTTTGGTGGGAGTTGGAAGGTCCACAAGTTCCACTTCGGCCTGATTGTTTGGCCATCGTCAACAATTTTGCTTTCCTGTTGGGAGGTGAGGAACTAGGGCCAGATGGAGAGTTTCATGCATCATCCAAGGTTTACCGCTACGATCCAAGGCAGAATTCCTGGCTGAGGATGGCAGACATGTCGGTCCCTAGGTCAGAATTTGCTGTTGGTGTGATCGGAAAGTTCATCTACGCTGTGGCAGGACGGACACGGGACGAGACATTTTACTCGACAGAGCGCTATGACATTGCAGAGGATAAGTGGGAGTTTGTGGATCCGTATCCAGTTAACAAATATGGCCACGAGGGCACGGTGTTGAATGGAAAACTCTATATCACCGGTGGTATCACATCATCCTCCACCTccaaacaggtgtgtgtgtttgatcccGAGCGCGAGGGAGCATCTGAACACCGTACGCGCCGCAATCCCATTCTTACCAACTGCTGGGAGAACAAATCTAAGATGAACTATGCACGCTGTTTCCACAAGATGATCTCCCACAACGGGAAACTTTATGTGTTCGGTGGGGTTTGTGTAATCCTGAGGGCATCTTTCGAATCCCAAGGCTGCCCTTCAACGGAAGTGTACAATCCAGAAACGGACGAATGGACCATCCTTGCTTCCATGCCCATTGGGCGAAGTGGGCATGGGGTGGCAGTGCTAGACAAACAGATCATGGTGCTGGGCGGATTGTGCTACAATGGCCATTACAGTGACTCTATACTCACCTTTGATCCTGAGGAGAACAAGTGGAAGGAGGATGAGTATCCCAGAATGCCTTGCAAACTGGATGGCTTGCAGGTGTGCAGCCTGCACTTCCCTGAGTATGTCCTGGAACACATGAAGCGCTGCAGCTGAGGGTCTCTGAGAAGGATGAGggggtgaaaaaaaacaaaaaacaaaacaaacgtTTACAAATGTGAAA
>XM_026938163.2
TAATACTACCGCCGCTCGTGCTCTGTATAGCCGGGAGAAAATGACGTCATAGTCAATCATGTCGTAGTAACTAAAGCGGTTTAGCTCCAACAGGGGAAACACAAGCAAAGGAAATGTGAGCGTCCTCTCAGCACACTGACAGCGAAGCCGCCGACCGGCCAGGAGGCCTCCAAAAGGTGAATCCCTCAGAAAAGAGGTTTTATTCCTACGGACACAAAGGGCCACTGTCCTCTGATTGGCTCGGACACCCCCCAGTGACATGCCCGTGGCCAATCAGAGGTGCTTAATGGCTGGGGACGTTGAGGTGTACCTGTCACAGGTGCATGATGGGAGCGTGTCCTCGGGCTTCCGAGCCTTGTATGAGGAACGCCTCCTGCTGGATGTGACACTCCTGATAGAAGAGCATCACTTCCAGGCCCACAAAGCTCTGCTGGCCACACAGAGTGACTACTTCCGGGTCATGTTCACGGCAGATATGCGGGAGCGTGACCAGGACAAGATCCATATGAAGGGGCTGACAGCGGCTGGCTTCGGCCACGTCCTTCGCTTCATGTATTATGGCTCGTTGGAACTCAGCATGCCCACAGTGCAGGAGATTCTGCAGGCGGCCATGTATGTGCAGCTCACCGAGGCTGTGGAGTTCTGCTGCTCTTTCCTGTTAGCCAAAATCTGCTTGGAGAACTGTGCTGAGGTCATGAGGTTGCTGGATGATTTCAGTGTGGCTGTAGAGGGAGTGCAGGAGCGGCTGGACGCCTTCCTGCTGGAGAACTTTGTGCCTCTGATGGCCAGGCCAGACTTTTTGTCCTACTTGAGCCTGGAGAAGCTAGTGGTGTGCCTGGGCAGTGAGAGGCTGAGTCGGTTCCCGGAGATTGAGCTGTATGAGGCTGTACAGGCTTGGCTCAGACATGACCGACGCCGCTGGAGACACACGGACGCTGTGGTGCAGAACCTGCGCTTCGGTCTCATGACACCAACACAAGTGTTTGAAAAGGTGAAGACCTCCGAGTTCTATCGTTACTCCCGTCAGCTGAGGCAGGAAGTGGACCAGGCACTCAACTACTTTCACTCGGTGAATGAGCAGCCGCTAGCCGAGACAAAGTCCAACCGGATCCGATCTGTTCGGCCTCAGACAGCTGTGTTCAGAGGGATGATCGGTCACAGCATGGTGAACAGCAAGATCCTCCTGCTGCATCGGCCCAAGGTTTGGTGGGAGTTGGAAGGTCCACAAGTTCCACTTCGGCCTGATTGTTTGGCCATCGTCAACAATTTTGCTTTCCTGTTGGGAGGTGAGGAACTAGGGCCAGATGGAGAGTTTCATGCATCATCCAAGGTTTACCGCTACGATCCAAGGCAGAATTCCTGGCTGAGGATGGCAGACATGTCGGTCCCTAGGTCAGAATTTGCTGTTGGTGTGATCGGAAAGTTCATCTACGCTGTGGCAGGACGGACACGGGACGAGACATTTTACTCGACAGAGCGCTATGACATTGCAGAGGATAAGTGGGAGTTTGTGGATCCGTATCCAGTTAACAAATATGGCCACGAGGGCACGGTGTTGAATGGAAAACTCTATATCACCGGTGGTATCACATCATCCTCCACCTccaaacaggtgtgtgtgtttgatcccGAGCGCGAGGGAGCATCTGAACACCGTACGCGCCGCAATCCCATTCTTACCAACTGCTGGGAGAACAAATCTAAGATGAACTATGCACGCTGTTTCCACAAGATGATCTCCCACAACGGGAAACTTTATGTGTTCGGTGGGGTTTGTGTAATCCTGAGGGCATCTTTCGAATCCCAAGGCTGCCCTTCAACGGAAGTGTACAATCCAGAAACGGACGAATGGACCATCCTTGCTTCCATGCCCATTGGGCGAAGTGGGCATGGGGTGGCAGTGCTAGACAAACAGATCATGGTGCTGGGCGGATTGTGCTACAATGGCCATTACAGTGACTCTATACTCACCTTTGATCCTGAGGAGAACAAGTGGAAGGAGGATGAGTATCCCAGAATGCCTTGCAAACTGGATGGCTTGCAGGTGTGCAGCCTGCACTTCCCTGAGTATGTCCTGGAACACATGAAGCGCTGCAGCTGAGGGTCTCTGAGAAGGATGAGggggtgaaaaaaaacaaaaaacaaaacaaacgtTTACAAATGTGAAA
>XM_034298205.1
TGGTCGAAGCGGGGTTGTGTGGAGTCGCATCGCCGAGAACAGGGGAAACACAAGCAAAGGAAATGTGAGCGTCCTCTCAGCACACTGACAGCGAAGCCGCCGACCGGCCAGGAGGCCTCCAAAAGGTGAATCCCTCAGAAAAGAGGTTTTATTCCTACGGACACAAAGGGCCACTGTCCTCTGATTGGCTCGGACACCCCCCAGTGACATGCCCGTGGCCAATCAGAGGTGCTTAATGGCTGGGGACGTTGAGGTGTACCTGTCACAGGTGCATGATGGGAGCGTGTCCTCGGGCTTCCGAGCCTTGTATGAGGAACGCCTCCTGCTGGATGTGACACTCCTGATAGAAGAGCATCACTTCCAGGCCCACAAAGCTCTGCTGGCCACACAGAGTGACTACTTCCGGGTCATGTTCACGGCAGATATGCGGGAGCGTGACCAGGACAAGATCCATATGAAGGGGCTGACAGCGGCTGGCTTCGGCCACGTCCTTCGCTTCATGTATTATGGCTCGTTGGAACTCAGCATGCCCACAGTGCAGGAGATTCTGCAGGCGGCCATGTATGTGCAGCTCACCGAGGCTGTGGAGTTCTGCTGCTCTTTCCTGTTAGCCAAAATCTGCTTGGAGAACTGTGCTGAGGTCATGAGGTTGCTGGATGATTTCAGTGTGGCTGTAGAGGGAGTGCAGGAGCGGCTGGACGCCTTCCTGCTGGAGAACTTTGTGCCTCTGATGGCCAGGCCAGACTTTTTGTCCTACTTGAGCCTGGAGAAGCTAGTGGTGTGCCTGGGCAGTGAGAGGCTGAGTCGGTTCCCGGAGATTGAGCTGTATGAGGCTGTACAGGCTTGGCTCAGACATGACCGACGCCGCTGGAGACACACGGACGCTGTGGTGCAGAACCTGCGCTTCGGTCTCATGACACCAACACAAGTGTTTGAAAAGGTGAAGACCTCCGAGTTCTATCGTTACTCCCGTCAGCTGAGGCAGGAAGTGGACCAGGCACTCAACTACTTTCACTCGGTGAATGAGCAGCCGCTAGCCGAGACAAAGTCCAACCGGATCCGATCTGTTCGGCCTCAGACAGCTGTGTTCAGAGGGATGATCGGTCACAGCATGGTGAACAGCAAGATCCTCCTGCTGCATCGGCCCAAGGTTTGGTGGGAGTTGGAAGGTCCACAAGTTCCACTTCGGCCTGATTGTTTGGCCATCGTCAACAATTTTGCTTTCCTGTTGGGAGGTGAGGAACTAGGGCCAGATGGAGAGTTTCATGCATCATCCAAGGTTTACCGCTACGATCCAAGGCAGAATTCCTGGCTGAGGATGGCAGACATGTCGGTCCCTAGGTCAGAATTTGCTGTTGGTGTGATCGGAAAGTTCATCTACGCTGTGGCAGGACGGACACGGGACGAGACATTTTACTCGACAGAGCGCTATGACATTGCAGAGGATAAGTGGGAGTTTGTGGATCCGTATCCAGTTAACAAATATGGCCACGAGGGCACGGTGTTGAATGGAAAACTCTATATCACCGGTGGTATCACATCATCCTCCACCTccaaacaggtgtgtgtgtttgatcccGAGCGCGAGGGAGCATCTGAACACCGTACGCGCCGCAATCCCATTCTTACCAACTGCTGGGAGAACAAATCTAAGATGAACTATGCACGCTGTTTCCACAAGATGATCTCCCACAACGGGAAACTTTATGTGTTCGGTGGGGTTTGTGTAATCCTGAGGGCATCTTTCGAATCCCAAGGCTGCCCTTCAACGGAAGTGTACAATCCAGAAACGGACGAATGGACCATCCTTGCTTCCATGCCCATTGGGCGAAGTGGGCATGGGGTGGCAGTGCTAGACAAACAGATCATGGTGCTGGGCGGATTGTGCTACAATGGCCATTACAGTGACTCTATACTCACCTTTGATCCTGAGGAGAACAAGTGGAAGGAGGATGAGTATCCCAGAATGCCTTGCAAACTGGATGGCTTGCAGGTGTGCAGCCTGCACTTCCCTGAGTATGTCCTGGAACACATGAAGCGCTGCAGCTGAGGGTCTCTGAGAAGGATGAGggggtgaaaaaaaacaaaaaacaaaacaaacgtTTACAAATGTGAAA

Function

symbol description
klhl15 Predicted to act upstream of or within protein ubiquitination. Predicted to be located in nucleus. Predicted to be part of Cul3-RING ubiquitin ligase complex. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 103. Orthologous to human KLHL15 (kelch like family member 15).

NR:

description
kelch-like protein 15 isoform X2

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10452 KLHL15; kelch-like protein 15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938162.2 True 2264 mRNA 0.53 4 13373564 13379652
XM_026938163.2 False 2168 mRNA 0.53 5 13373878 13379652
XM_034298205.1 False 2117 mRNA 0.53 5 13373814 13379652

Neighbor

gene id symbol gene type direction distance location
c8g NA coding upstream 23348 13343746 ~ 13350216 (+)
msrb2 msrb2,LOC107735060 coding upstream 31903 13336338 ~ 13341661 (+)
armc3 armc3 coding upstream 39039 13322337 ~ 13334525 (+)
skida1 skida1 coding upstream 95539 13274660 ~ 13278025 (+)
cul1b cul1,LOC107686696,LOC107595130,LOC107727219,LOC107741709,LOC107695409 coding upstream 331048 13021167 ~ 13042516 (+)
trnat-agu_17 NA coding downstream 5549 13385201 ~ 13385274 (+)
cmbl cmbl coding downstream 6422 13386074 ~ 13396461 (+)
mtrr mtrr coding downstream 26512 13406164 ~ 13447748 (+)
cbln2b cbln2,cbln2b,LOC107657802,LOC107596058,LOC107741967 coding downstream 595588 13975240 ~ 13980189 (+)
rttn rttn coding downstream 854392 14234044 ~ 14295771 (+)
G331496 eif2s3,LOC102783563 non-coding upstream 10862 13361369 ~ 13362702 (+)
G331498 NA non-coding upstream 12546 13360280 ~ 13361018 (+)
G331468 NA non-coding upstream 83165 13287447 ~ 13290399 (+)
G331487 NA non-coding upstream 99153 13274127 ~ 13274411 (+)
G331486 NA non-coding upstream 99523 13273743 ~ 13274041 (+)
G331502 NA non-coding downstream 992 13380644 ~ 13382636 (+)
LOC117595809 NA non-coding downstream 578372 13958024 ~ 13962184 (+)
G332111 NA non-coding downstream 1308511 14688163 ~ 14703270 (+)
G332238 NA non-coding downstream 1565339 14944991 ~ 14945212 (+)
G332248 NA non-coding downstream 1576208 14955860 ~ 14956067 (+)
G331476 NA other upstream 115148 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 660886 12706939 ~ 12712678 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 1216777 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 1625005 11717415 ~ 11748559 (+)
G330257 NA other upstream 2398649 10973264 ~ 10974915 (+)
stau2 stau2,LOC107691439 other downstream 1754701 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 1871983 15251635 ~ 15265895 (+)
G332636 NA other downstream 2186523 15566175 ~ 15566663 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 3720512 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 3905430 17285082 ~ 17302004 (+)

Expression


Co-expression Network