hnf4g (hnf4g,LOC107586790,LOC107666612)


Basic Information

Item Value
gene id hnf4g
gene name hnf4g,LOC107586790,LOC107666612
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18530475 ~ 18542760 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938175.2
TCAGCAGAAATAGTTAGGGAGGGATGAAGTTTTCTCTGACACCGGTATCCAAATCCCTCCTGGACATGGATGTAGCTAATTACTGTGAAGGTCTGGACCCGACCTATAGCACGCTGGGCTTTGAGAACGCTGACATGCTATATAGCGGGGAAAGCATGCCAACAGAGTCCAGCATCAGCCATGGGGATAATGGCGTAATCTCCAACTGTGCCATCTGTGGGGACAAGGCCACGGGCAAGCACTACGGCGCCTCCAGCTGTGACGGCTGCAAGGGCTTTTTCCGCAGGAGCATCAGGAAGAGCCACGTCTACTCATGCAGGTTCAGTCGCCAGTGTGTCATCGACAAAGACAAGAGGAATCAGTGCCGCTTCTGTAGGCTTCACAAATGCTTCCGAGCTGGAATGAAGAAAGAAGCTGTGCAGAATGAACGGGATCGTATCAGCTCCAGGAGAAGCACACCAGACTCCCATGACCTTCCACCTATCACTGTGCTGGCGCAGGCAGAGTCCCTTTCACAACAGATCAGCGTCGCCAGTCCGACGGGCTCCGCTGATATCTCTGAGAAGAAATCAGCCACCGTTGGGGACGTGTGCGAGTCTATGAAGCAACAGCTGCTTGTTCTGGTAGAGTGGGCTAAATACATCCCGGCCTTCGGCGAATTGCCTCTTGACGACCAGGTCAGTTTATTACGAGCACATGCAGGAGAACATCTTCTGCTCGGAGTAGCCAAGCGGTCAATGCCATACAAAGATGTCCTGCTGCTCGGTAATGGCTGTGTTATTCACCGAAATTGCCCCGAGGCAGAGATCAGCCGAGTGGCTAACCGCGTCCTCGACGAATTGGTCTCACCCTTCCAAGACATACAGATTGATGACAATGAATATGCAGCTCTGAAAgccattgttttttttgacCCTGATGCCAAAAGCCTCAGAGATCCCTCGAAGATAAAAAGCATGAGGTACCAGGTTCAGATGAGTCTTGAAGACTACATTAATGACCGTCAGTATGATTCTCGTGGACGCTTTGgcgagctgctgctgcttctcccTACCCTGCAGAGCATCACCTGGCAGATGATCGAGCAGCTCCAGTTCATCAAACTCTTTGGCCTGGCCAAGATTGACAACCTGCTGCAAGAGATGCTGCTAGGAGGTCTGACCACAGAGCAGCCTTACTTGCACCATCATAGCCACCCCCAGCTCGCCCAGGATCCAATCACGGGCCAGACGTTAGTCATCAGCTCCATTTCAGGCCCTCTGCATGCCCAGCAAATAGCTTCTCCAGACACCCCGATCCCATCTCCTCCTCAGACTCAGAGCCAGGAGATCTATAAGGCCTCCTCTAGTCCTACACTCTTAATGCCGTCACAGCCCATCTCCAACAGACCCTCACCTGAGCCACCACTCTGAGGAATAAAAAGGCATCCTTGCATCATTAATAACTGTATTTGAGTGGAGCTGTATGccctgtgtgtttgtaaatgtgtaaatagtatgagatgattaaaaaaaaaaaaaaaaaaaaagcatattattaaaaatctttGAGACCA
>XM_026938176.2
CCAGCTTTGCCCTGAGTTTTTTATCCTGAGGACACTCAACATGACTAACTGCTTTAAAAAACTCTCCCATTTTCCCTTTGTGAGAAAGATAGCAAAATAGCTCATTTAGATTCAGTGCTATCAATGAAAAGTCGTGTAAGGACGGATAAAAGAAAGCATGCCAACAGAGTCCAGCATCAGCCATGGGGATAATGGCGTAATCTCCAACTGTGCCATCTGTGGGGACAAGGCCACGGGCAAGCACTACGGCGCCTCCAGCTGTGACGGCTGCAAGGGCTTTTTCCGCAGGAGCATCAGGAAGAGCCACGTCTACTCATGCAGGTTCAGTCGCCAGTGTGTCATCGACAAAGACAAGAGGAATCAGTGCCGCTTCTGTAGGCTTCACAAATGCTTCCGAGCTGGAATGAAGAAAGAAGCTGTGCAGAATGAACGGGATCGTATCAGCTCCAGGAGAAGCACACCAGACTCCCATGACCTTCCACCTATCACTGTGCTGGCGCAGGCAGAGTCCCTTTCACAACAGATCAGCGTCGCCAGTCCGACGGGCTCCGCTGATATCTCTGAGAAGAAATCAGCCACCGTTGGGGACGTGTGCGAGTCTATGAAGCAACAGCTGCTTGTTCTGGTAGAGTGGGCTAAATACATCCCGGCCTTCGGCGAATTGCCTCTTGACGACCAGGTCAGTTTATTACGAGCACATGCAGGAGAACATCTTCTGCTCGGAGTAGCCAAGCGGTCAATGCCATACAAAGATGTCCTGCTGCTCGGTAATGGCTGTGTTATTCACCGAAATTGCCCCGAGGCAGAGATCAGCCGAGTGGCTAACCGCGTCCTCGACGAATTGGTCTCACCCTTCCAAGACATACAGATTGATGACAATGAATATGCAGCTCTGAAAgccattgttttttttgacCCTGATGCCAAAAGCCTCAGAGATCCCTCGAAGATAAAAAGCATGAGGTACCAGGTTCAGATGAGTCTTGAAGACTACATTAATGACCGTCAGTATGATTCTCGTGGACGCTTTGgcgagctgctgctgcttctcccTACCCTGCAGAGCATCACCTGGCAGATGATCGAGCAGCTCCAGTTCATCAAACTCTTTGGCCTGGCCAAGATTGACAACCTGCTGCAAGAGATGCTGCTAGGAGGTCTGACCACAGAGCAGCCTTACTTGCACCATCATAGCCACCCCCAGCTCGCCCAGGATCCAATCACGGGCCAGACGTTAGTCATCAGCTCCATTTCAGGCCCTCTGCATGCCCAGCAAATAGCTTCTCCAGACACCCCGATCCCATCTCCTCCTCAGACTCAGAGCCAGGAGATCTATAAGGCCTCCTCTAGTCCTACACTCTTAATGCCGTCACAGCCCATCTCCAACAGACCCTCACCTGAGCCACCACTCTGAGGAATAAAAAGGCATCCTTGCATCATTAATAACTGTATTTGAGTGGAGCTGTATGccctgtgtgtttgtaaatgtgtaaatagtatgagatgattaaaaaaaaaaaaaaaaaaaaagcatattattaaaaatctttGAGACCA
>XM_026938177.2
GCAGAAATAGTTAGGGAGGGATGAAGTTTTCTCTGACACCGGTATCCAAATCCCTCCTGGACATGGATGTAGCTAATTACTGTGAAGGTCTGGACCCGACCTATAGCACGCTGGGCTTTGAGAACGCTGACATGCTATATAGCGGGGAAAGCATGCCAACAGAGTCCAGCATCAGCCATGGGGATAATGGCGTAATCTCCAACTGTGCCATCTGTGGGGACAAGGCCACGGGCAAGCACTACGGCGCCTCCAGCTGTGACGGCTGCAAGGGCTTTTTCCGCAGGAGCATCAGGAAGAGCCACGTCTACTCATGCAGGTTCAGTCGCCAGTGTGTCATCGACAAAGACAAGAGGAATCAGTGCCGCTTCTGTAGGCTTCACAAATGCTTCCGAGCTGGAATGAAGAAAGAAGCTGTGCAGAATGAACGGGATCGTATCAGCTCCAGGAGAAGCACACCAGACTCCCATGACCTTCCACCTATCACTGTGCTGGCGCAGGCAGAGTCCCTTTCACAACAGATCAGCGTCGCCAGTCCGACGGGCTCCGCTGATATCTCTGAGAAGAAATCAGCCACCGTTGGGGACGTGTGCGAGTCTATGAAGCAACAGCTGCTTGTTCTGGTAGAGTGGGCTAAATACATCCCGGCCTTCGGCGAATTGCCTCTTGACGACCAGGTCAGTTTATTACGAGCACATGCAGGAGAACATCTTCTGCTCGGAGTAGCCAAGCGGTCAATGCCATACAAAGATGTCCTGCTGCTCGGTAATGGCTGTGTTATTCACCGAAATTGCCCCGAGGCAGAGATCAGCCGAGTGGCTAACCGCGTCCTCGACGAATTGGTCTCACCCTTCCAAGACATACAGATTGATGACAATGAATATGCAGCTCTGAAAgccattgttttttttgacCCTGATGCCAAAAGCCTCAGAGATCCCTCGAAGATAAAAAGCATGAGGTACCAGGTTCAGATGAGTCTTGAAGACTACATTAATGACCGTCAGTATGATTCTCGTGGACGCTTTGgcgagctgctgctgcttctcccTACCCTGCAGAGCATCACCTGGCAGATGATCGAGCAGCTCCAGTTCATCAAACTCTTTGGCCTGGCCAAGATTGACAACCTGCTGCAAGAGATGCTGCTAGGAGTCTGACCACAGAGCAGCCTTACTTGCACCATCATAGCCACCCCCAGCTCGCCCAGGATCCAATCACGGGCCAGACGTTAGTCATCAGCTCCATTTCAGGCCCTCTGCATGCCCAGCAAATAG

Function

symbol description
hnf4g Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in anatomical structure development; cell differentiation; and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human HNF4G (hepatocyte nuclear factor 4 gamma).

NR:

description
hepatocyte nuclear factor 4-gamma-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08037 NR2A2, HNF4G; hepatocyte nuclear factor 4-gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938175.2 False 1555 mRNA 0.50 10 18534278 18542760
XM_026938176.2 True 1557 mRNA 0.49 10 18530475 18542760
XM_026938177.2 False 1274 mRNA 0.52 9 18534281 18542356

Neighbor

gene id symbol gene type direction distance location
LOC113541230 NA coding upstream 2780 18523154 ~ 18527695 (+)
pign pign,LOC107663715,LOC107721925,LOC107666639,LOC107705240 coding upstream 7181 18503818 ~ 18523294 (+)
sgk3 sgk3,LOC107721888,LOC107663688,LOC107666631,LOC107705243,LOC107590197 coding upstream 63230 18453107 ~ 18467245 (+)
si:dkey-97a13.12 NA coding upstream 98325 18396227 ~ 18432150 (+)
rrs1 rrs1,LOC107590198,LOC107721889 coding upstream 106915 18420986 ~ 18423560 (+)
zfhx4 zfhx4,LOC107666618,LOC107721891,LOC107705239,LOC107590192 coding downstream 190200 18732960 ~ 18788585 (+)
LOC113541280 LOC108256606 coding downstream 273474 18816234 ~ 18931272 (+)
zc2hc1a zc2hc1a coding downstream 478246 19021006 ~ 19033661 (+)
ctnnd2a ctnnd2a,LOC108256437,LOC108438556,LOC107716425 coding downstream 518129 19060889 ~ 19328125 (+)
LOC117595764 NA coding downstream 789414 19332174 ~ 19335280 (+)
G334211 mybl1 non-coding upstream 89819 18440255 ~ 18440656 (+)
G334210 NA non-coding upstream 91029 18439149 ~ 18439446 (+)
G334209 NA non-coding upstream 93069 18435721 ~ 18437406 (+)
G334120 NA non-coding upstream 205590 18296643 ~ 18324885 (+)
G334077 NA non-coding upstream 326795 18203063 ~ 18203680 (+)
LOC113541128 NA non-coding downstream 602 18543362 ~ 18681823 (+)
G334345 NA non-coding downstream 136115 18678875 ~ 18738178 (+)
G334371 NA non-coding downstream 145999 18688759 ~ 18726730 (+)
LOC117595807 NA non-coding downstream 162532 18705292 ~ 18706093 (+)
G334386 NA non-coding downstream 218329 18761089 ~ 18854003 (+)
mcmdc2 mcmdc2 other upstream 44466 18467878 ~ 18486009 (+)
mtfr1 mtfr1 other upstream 207180 18315354 ~ 18323295 (+)
G333943 LOC108256468 other upstream 537461 17986762 ~ 17993014 (+)
pan3 pan3,LOC107705213 other upstream 733954 17761531 ~ 17796521 (+)
rnf6 rnf6,LOC106590444 other upstream 988088 17535944 ~ 17542387 (+)
G334373 NA other downstream 150389 18693149 ~ 18717953 (+)
LOC117595806 zfhx4,LOC107590192 other downstream 169288 18712048 ~ 18747477 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other downstream 775097 19317857 ~ 19427936 (+)
G334838 NA other downstream 1033351 19576111 ~ 19577073 (+)
cip2a kiaa1524 other downstream 1094108 19636868 ~ 19703804 (+)

Expression


Co-expression Network