prdm14 (prdm14,LOC107683184)


Basic Information

Item Value
gene id prdm14
gene name prdm14,LOC107683184
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 14618043 ~ 14629435 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938179.2
GTTTCCAGTTCAGCATCCCAGCTTCAACTGATCcacttcactctctctctctctcttgcacacaaacactttgcatttgttgttgttgttgttgttgttttcgcATCCGAGACGAATGTGGCCCTGATTTCCCTCCATCTGCTTCACAATCTGCTTTTCCGAGTCCAGCAGGAAGCCTGAATCTGCAGATCGTCTCCTCGCCATCAGCTCAGCGTGCCCTATGTCTGCTGCAGTGATGGCCGCCTCTGGTTCTTGCATGAACCTCCTAAGGAGAAACCCCACCTTCCAGCCTCTTCATCctctccatcctgctctccatcctcctctccatcctcctcttCACCCTCTCGGCTCAGACACACATTCTTTCCTGAGCCAGCAGTCTTCCATCCTCCATGAGCAAATTTTCAACCTTCCATATTTCAACATAATCCAAccgaatcacacacacagacctcagCACACACTGGGCTCTCTGTCAGGCTTCAACAGCCCtgcttcatcctcctcttcctcttcctctccaaACAAAGACGCCTTCATGCACCCTCAGATGATAGAGGAACCGAAGCGCACTTATAGTTTCACCCAGGAGGATTTGTTCACTGTGCTCTATGGATACAGTAAAGACCATCAGCAGGGGGTCGGACACGCCATCTCAGGACTGCTGCTACCTAATGACCCAGACCTGCTGCCTGCCAGCATCGACACAGAAAGTCTCGAGCTGCCTGAAGgtCTGTGTGTGCTCCGGTGCTCGTGCGCCGGTGTTCCCCACTGTGGGGTTTTTGCCGCGCGCAACTCTATACCTAAAGGCACGCGCTTCGGGCCGTACCGCGGGAAAGCGGTGAACACAAGCGAGATCAAAACACACCACGACAACACACTCATGTGGGAGATCTTTGAGAAGGGTCGGTTGAGTCACTTTGTGGACGGCGGCGGCGCGCGCGGCAGTTGGATGTCGCTGGTGCAGTGCGCGCGCTTCCCGGAGGAGCAGAACGTGGTGGCGGTGCAGCGCGCGGGCCGCATTTACTACGAGACGTGCCGCGAGGTGCGACCCCTGCAGGAGCTGCTGGTGTGGTACGGAGACACCTACACCCTGTACATGGGCATCCCCATGTCCctcagagaggaggaggaggaggaggaggagcaggacgGAGactcgGCTGAGGGCTATAAATGTGATCGATGTGGAAAGGTCTTCGCTTACCGATACTACAGAGATAAGCACCTGAAGTACACGCGCTGTGTGGATCAGGGAGACCGGAAGTTCCCCTGTCATCTCTGTAACAGATCGTTCGAGAAGAGAGACCGGCTGCGCATCCACATCCTGCACGTGCACGAGAAACACCGCCCGCATAAGTGCTCTGTGTGCGGCAAAAGTTTTTCTCAGTCCTCGAGCCTCAACAAGCACATGCGCGTGCACTCCGGAGAGAGGCCTTACAAATGCGTCTACTGCAACAAGGCGTTCACTGCCTCCAGCATCCTCCGCACACACATCAGGCAACACTCAGGTGAAAGGCCATTTAAGTGCAAACACTGTGGGAAAGCCTTCGCCTCTCATGCGGCCCATGACAGCCACGTACGCCGGAGCCACGCCAAAGACAAACCGGTGgcatgtgatctctgtgacagCACGTTTGATCAAGCAGAGGAGCTTAAAGAGCACATGAAGATCCACAAGAAGTGCCCGCTCATGCAGTCCCCGGctcttccttcctctcctgGAACACACACGGCAGATCAGAATGGCCCTTTAAACACCAAATGTGGTCGAGTGCAGCGGGACCTCACCACGAGTTTCCCGCCTTTTCCAGGAATCCCCTCCAGTTACAGACCATGGAATTAACTCACCAACCTTTGTGACTCCATCCTAACCTGCGCACTAACATACCACACAGCATGGCTGTGATCTAATTCAAGACACAGGTCTTAGCTCAGGCATAGGATCCTGGACATTGCTGGTGTGTTCAAACTAGTACACTAGCCTAGCTTAGCATCAGGTGTAATAGGCTAGGCTATGTAACAACTTAAACGCAGTGTGATTGGAACATTCACCAGGAACATTCTGGAGCCCAACAACAATAACCACCTGGCCAGAGTTTTCATTCCCTGAATAGAGCTGAACAATGAGGGGTCTGGAAGTAAATATGGCATTTGTGATGGCTGTAATAAATTAGATGTTTGGTGATGAAGCTAAGCTATACGCTactttttgtatatattgtgATTAATCGCCAAAGTCCCTGTGAAGTCATGGAACATGGAAATTGCACTGGACAGGACCATCCACTTTTTCAACAGCCTTGTTTCCAGAAGCACCCTGACTACGACATAGTTTGCTAGACCACTAGCTAAGTTAATGAATGAGCTGCTGAATTAGGCTAAAATAGCTGGCACTCTGGTGCAACATGTAACATTGCCAGTCCTGAGCCCAtgctactgtctgtgtggagtttcacatgttcttcccatgttcttcccatgttaGCATGGGCTTCCTCgaggttcttcagtttccccctccctcctaaaaacatgttgttaggTGAATTGACTATGCTAAATGGCCGTAGGTGCGAATGTATGATGCCTTGTGATGGAATAGCGTATTCCTACCTCTCTTTCCACATTCCCGGAATAGTCTCCACATCCACcttgactctgaccaggataaagtggttactgaagatgaatgaatgaattaggttaaaataatcagacatatcaaacaaataaatcgactatatatacacaataactACAAAATACTTTACAAAGGATTGTTAATCCTTAAAAGCACACTGGAGACACTAGAGAAAATACACAAGAGCATCATGGGATCAGTAGCTCTTTCCACTGGAAAAGACATTCGTGATGCAGTCGTGTACCTCGTTGAGAGAAACTTACAGAACCAAGGCCTCTTCAGCTCTGTCAGCCTATTGTTTCAGTCTTTCTTGATTTCATCCTGTTCTATTTAATACACATGTAAGTagcttatatttaatattataatttccTCTTGTGGTTTTTATTGTGATTTAATGTCTTAATTTATtacactgtatgtttttaaCTAGAAGtggtgttttgttgtttttcaacTTGCAGCAAATTGTGATGTgctgtaaaattattattattattattattgttattgttattattattttgtcattgTTAAACTAGCTAATCATGTTTATATTGCAAATGTCATTTTTCTGTGATTCTATCCATATAATGTATAGCTGTAAGCTAAACATGGCATTGTATcactataaacaaaaaacatacagcatGAATCATGAGTAATCTCATTAATTCAGTAAAGAGTTGTTTTACACATTCCATGTGGTGTTTTGATTCGTCTGAATCAGCGTGATGCAATGTCTCACTGAATCAGTTCAGCATCTTATCAGATTATCATTTGAACCCGTTGC

Function

symbol description
prdm14 Predicted to enable RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within axonogenesis; regulation of DNA methylation; and stem cell population maintenance. Located in nucleus. Is expressed in several structures, including nervous system; neuroblasts; presumptive neural plate; spinal cord neural keel; and spinal cord neural tube. Orthologous to human PRDM14 (PR/SET domain 14).

NR:

description
PREDICTED: nuclear receptor coactivator 2-like

GO:

id name namespace
GO:0007409 axonogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0005488 binding molecular_function

KEGG:

id description
K24646 PRDM14; PR domain zinc finger protein 14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938179.2 True 3440 mRNA 0.47 9 14618043 14629435

Neighbor

gene id symbol gene type direction distance location
ngdn ngdn coding downstream 31174 14578785 ~ 14586869 (-)
thtpa thtpa coding downstream 77279 14536562 ~ 14540764 (-)
gdap1 gdap1,LOC107693809,LOC107589927 coding downstream 135198 14475937 ~ 14482845 (-)
pi15a pi15a,LOC108256124,LOC107758808,LOC107589991,LOC107657806,LOC107689437,LOC107706855 coding downstream 188673 14419894 ~ 14429370 (-)
dok6 dok6,LOC107657792,LOC107596042,LOC107741641,LOC107589921,LOC107689434,LOC107727392 coding downstream 244590 14313082 ~ 14373453 (-)
ncoa2 ncoa2 coding upstream 6251 14635686 ~ 14695608 (-)
tram1 tram1,LOC107657822 coding upstream 72589 14702024 ~ 14710822 (-)
terf1 terf1 coding upstream 316224 14945659 ~ 14954679 (-)
dcaf11 dcaf11 coding upstream 482263 15111698 ~ 15120918 (-)
rdh10a rdh10a,rdh10,LOC108256305,LOC107560263,LOC107725699,LOC107754204,LOC107657826,LOC107696016 coding upstream 599781 15229216 ~ 15245025 (-)
G332147 NA non-coding downstream 53339 14537252 ~ 14564704 (-)
G332169 NA non-coding downstream 95428 14513735 ~ 14522615 (-)
G332056 NA non-coding downstream 151430 14466394 ~ 14466613 (-)
G331569 mtrr non-coding downstream 1204232 13412902 ~ 13413811 (-)
G331568 NA non-coding downstream 1210585 13406386 ~ 13407458 (-)
G332196 NA non-coding upstream 84782 14714217 ~ 14797198 (-)
G332580 NA non-coding upstream 715837 15345272 ~ 15397132 (-)
G332637 NA non-coding upstream 936752 15566187 ~ 15566646 (-)
G332676 NA non-coding upstream 991071 15620506 ~ 15620717 (-)
G332682 NA non-coding upstream 1000788 15630223 ~ 15630444 (-)
LOC113541105 NA other downstream 855428 13757658 ~ 13762615 (-)
LOC113541288 NA other downstream 1940105 12676545 ~ 12677938 (-)
cdv3 cdv3 other downstream 2621343 11944054 ~ 11996700 (-)
G330379 NA other downstream 3534892 11082268 ~ 11083151 (-)
ackr4b ackr4 other downstream 3687268 10923126 ~ 10930775 (-)
LOC113541102 msc other upstream 303560 14932995 ~ 14937404 (-)
LOC113541115 kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 other upstream 333402 14962837 ~ 15065810 (-)
sec61g NA other upstream 986063 15615498 ~ 15618842 (-)
cpa6 cpa6,LOC106579545 other upstream 1651836 16281271 ~ 16312916 (-)
oxsr1b oxsr1,oxsr1b other upstream 2200355 16829790 ~ 16879884 (-)

Expression


Co-expression Network