LOC113541296 (csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268)


Basic Information

Item Value
gene id LOC113541296
gene name csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17285104 ~ 17286736 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938185.2
TTGTTTGGTACGCATTTCCTGTTGGGAGCGGCAGCTTGTGACTGTCCAGCCTGTTTGGTTACCTGGGGAAAGGTTTAGGAGCTTTAGACTAAAcaataattgtatttatttttgcttccaGACAAAGAAAATGCCTTTGTTGTGCGGAGGAACCACCGAGGCGAAGGACGCCACCGAGGAAGTGCAGAAAATCTGTGATGAGATGAAGCCTCATGCGGAGGAAAAAGCAGGAAGAAAGTTTGACGTCTTCACTGCTAAATCCTACAAGTCACAGGTGGTAGCTGGAACGAACTATTTCATCAAGGTCCATGTGGGTGGCGATGACTTTGTTCACCTGCGTATCTATAAGACGCTGCCACACGCTGGAGAAAAACTGACACTTCATGGAATACAGACACCCAAAGCCCATCAGGACCCCATCGAATACTTCTGAACATACACTCCATTAAGAAAGAGACACCATCGaaactgcactaacacacataaACAGGCACTGTATTTGAATTTGTATTCCATATGGAATGTCACTGGCTTAAAACTGAGTGACATTAATCACAACCTGTTTATTCCTTTTTACTTCATAAACTGACAAGAAATGAGCTGCTTCTTCaattaataaaatgacagtGGTAATCTCTCATAAATGTTCTGCACTAAAGGGAACAAATGGAGTGGTATTTGGTATTTGATGTGTTTATAATGTGTCTATATGTCCATCTTGAGGAATGCAATACCTGTAATGAGATTAaaggtaaaaataaacattgacaCATGA

Function

symbol description
csta Enables cysteine-type endopeptidase inhibitor activity and protease binding activity. Involved in several processes, including keratinocyte differentiation; negative regulation of peptidase activity; and peptide cross-linking. Located in several cellular components, including cornified envelope; extracellular space; and nucleoplasm. Implicated in peeling skin syndrome.

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0004869 cysteine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
K13907 CSTA_B; cystatin-A/B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938185.2 True 775 mRNA 0.41 3 17285104 17286736

Neighbor

gene id symbol gene type direction distance location
sec22c sec22c coding upstream 113506 17163000 ~ 17171598 (+)
klhl40b klhl40,LOC108256616,LOC107701660,LOC107754945,LOC107585012,LOC107591253,LOC107733151 coding upstream 169328 17111768 ~ 17115776 (+)
gars1 gars,LOC107591252,LOC107754935,LOC103377215,LOC107733158,LOC102797257 coding upstream 186759 17086210 ~ 17098345 (+)
spag6 spag6,LOC107686700,LOC107741767,LOC107727238 coding upstream 199628 17074213 ~ 17085476 (+)
plcd1a plcd1 coding upstream 270310 16985047 ~ 17014794 (+)
LOC117595788 NA coding downstream 404 17287140 ~ 17290895 (+)
LOC113541297 LOC108256406 coding downstream 9837 17296573 ~ 17299390 (+)
fam162a NA coding downstream 23985 17310721 ~ 17315700 (+)
si:ch211-161h7.8 LOC108256135 coding downstream 43098 17329834 ~ 17333509 (+)
drd3 drd3 coding downstream 49456 17336192 ~ 17353309 (+)
G333360 NA non-coding upstream 98429 17186129 ~ 17186675 (+)
G333244 map3k20,LOC108439325,LOC108256334,LOC102795565,LOC101475626 non-coding upstream 387249 16893006 ~ 16897855 (+)
LOC113541357 NA non-coding upstream 394943 16888906 ~ 16890161 (+)
G333232 NA non-coding upstream 455125 16732916 ~ 16829979 (+)
G333148 NA non-coding upstream 651321 16605148 ~ 16633783 (+)
G333548 NA non-coding downstream 76135 17362871 ~ 17363075 (+)
G333582 NA non-coding downstream 159449 17446185 ~ 17447043 (+)
G333787 NA non-coding downstream 380900 17667636 ~ 17667844 (+)
G333791 NA non-coding downstream 383680 17670416 ~ 17670625 (+)
G333779 usf3 non-coding downstream 420986 17707722 ~ 17712380 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other upstream 175077 17100164 ~ 17110027 (+)
G332636 NA other upstream 1718441 15566175 ~ 15566663 (+)
stau2 stau2,LOC107691439 other upstream 1970136 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other upstream 2019209 15251635 ~ 15265895 (+)
G331476 NA other upstream 4026688 13257894 ~ 13258416 (+)
rnf6 rnf6,LOC106590444 other downstream 249208 17535944 ~ 17542387 (+)
pan3 pan3,LOC107705213 other downstream 474795 17761531 ~ 17796521 (+)
G333943 LOC108256468 other downstream 700026 17986762 ~ 17993014 (+)
mtfr1 mtfr1 other downstream 1028618 18315354 ~ 18323295 (+)
mcmdc2 mcmdc2 other downstream 1181142 18467878 ~ 18486009 (+)

Expression


Co-expression Network