LOC113541297 (LOC108256406)


Basic Information

Item Value
gene id LOC113541297
gene name LOC108256406
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17296573 ~ 17299390 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938186.2
AGTTTGAACACCAGTGCACAGGGAGTCATTTATTTTACTCAAGACTACAGGACACAGAGAGGCAAAACGtgatttaaataaactaaactatatAGTCATGTCTCAATTATTTCTGCAGTTTGGGACTTTGCTCTGTACTGCTACAGTAATAATGGCTTTGTGTGGAGGGCTCTCCAAGGTGAAAGAAGCCACTGCTGAGGTGCAGCAAATCTGTGATGAGATGAAGCCTCATGCAGAGCAAAAAGCAGGAAGAAAGTTTCAAATCTTCACTGCTAAATCCTACAAGACACAGGTGGTAGCTGGAACGAACTATTTCATCAAGGTCCATGTGGGTGGCAATGACTATGTTCACCTGCGTATCTATAAGACGCTGCCACACGCTGGAGAAAAACTGGCACTTCATGGAATACAGACACCCAAAGCCCATCAGGACCCCATCGAATACTTCTGAACATACACTTCATTAAGAAAGAGACACCATCGaaactgcactaacacacataaacaggaaCTGTATTTGAATTTGTATTCCATATGGAATGTCACTGGCTTAAAACTGAGTGACATTAATCACAACCTGTTTATTCCATCTTAATTCCTGAACTGACAAGAAATGAGCTGCTTCTTCAATTAATAAAAAGGCAGTGATAAATATCAGTCATTTACAATCTCTCAATTCCTTTTAAAATTGATCGAACAAATGGAGTGGTGTTTGGTATTTGATGTGTTTATAATGTGTCTATATGTCCATCTTGAAGAATGCAATAcctgtaataaaattaaaggtaaaaataaa

Function

GO: NA

KEGG:

id description
K13907 CSTA_B; cystatin-A/B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938186.2 True 796 mRNA 0.38 4 17296573 17299390

Neighbor

gene id symbol gene type direction distance location
LOC117595788 NA coding upstream 5678 17287140 ~ 17290895 (+)
LOC113541296 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 coding upstream 9837 17285104 ~ 17286736 (+)
sec22c sec22c coding upstream 124975 17163000 ~ 17171598 (+)
klhl40b klhl40,LOC108256616,LOC107701660,LOC107754945,LOC107585012,LOC107591253,LOC107733151 coding upstream 180797 17111768 ~ 17115776 (+)
gars1 gars,LOC107591252,LOC107754935,LOC103377215,LOC107733158,LOC102797257 coding upstream 198228 17086210 ~ 17098345 (+)
fam162a NA coding downstream 11331 17310721 ~ 17315700 (+)
si:ch211-161h7.8 LOC108256135 coding downstream 30444 17329834 ~ 17333509 (+)
drd3 drd3 coding downstream 36802 17336192 ~ 17353309 (+)
ccdc191 ccdc191 coding downstream 78911 17378301 ~ 17390639 (+)
urad urad coding downstream 132656 17432046 ~ 17434825 (+)
G333360 NA non-coding upstream 109898 17186129 ~ 17186675 (+)
G333244 map3k20,LOC108439325,LOC108256334,LOC102795565,LOC101475626 non-coding upstream 398718 16893006 ~ 16897855 (+)
LOC113541357 NA non-coding upstream 406412 16888906 ~ 16890161 (+)
G333232 NA non-coding upstream 466594 16732916 ~ 16829979 (+)
G333148 NA non-coding upstream 662790 16605148 ~ 16633783 (+)
G333548 NA non-coding downstream 63481 17362871 ~ 17363075 (+)
G333582 NA non-coding downstream 146795 17446185 ~ 17447043 (+)
G333787 NA non-coding downstream 368246 17667636 ~ 17667844 (+)
G333791 NA non-coding downstream 371026 17670416 ~ 17670625 (+)
G333779 usf3 non-coding downstream 408332 17707722 ~ 17712380 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other upstream 186546 17100164 ~ 17110027 (+)
G332636 NA other upstream 1729910 15566175 ~ 15566663 (+)
stau2 stau2,LOC107691439 other upstream 1981605 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other upstream 2030678 15251635 ~ 15265895 (+)
G331476 NA other upstream 4038157 13257894 ~ 13258416 (+)
rnf6 rnf6,LOC106590444 other downstream 236554 17535944 ~ 17542387 (+)
pan3 pan3,LOC107705213 other downstream 462141 17761531 ~ 17796521 (+)
G333943 LOC108256468 other downstream 687372 17986762 ~ 17993014 (+)
mtfr1 mtfr1 other downstream 1015964 18315354 ~ 18323295 (+)
mcmdc2 mcmdc2 other downstream 1168488 18467878 ~ 18486009 (+)

Expression


Co-expression Network