nktr (nktr,LOC107670423)


Basic Information

Item Value
gene id nktr
gene name nktr,LOC107670423
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17142461 ~ 17161207 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938200.2
GTTGTTGTTATGGAAACAGCGCCCCCGCGCGGCGACACGCGGCGGAACAGCTGCAGCTCAGCGCTGGTCACGTCTTTGAAATCTCAGtaacTTAACGGCAGCCTGCTTCGTCCAGAATGGGGGTGAAAGATCGCCCTCAGTGCTACTTTGATGTAGAAATCAACAGAGAGCCAGTTGGACGCATTGTCTTTCAACTGTTCTCCGATATTTGTCCCAAGACAAGCAAAAATTTCCTCTGTCTGTGTACTGGTGAAAAGGGCACTGGTAAAACTACAGGGAAAAAATTGTGCTATAAAGGTTCTGTATTCCATCGAGTAGTTAAGAACTTCATGATTCAAGGGGGAGATTTCACTGAAGGCaatggaagaggaggagagtcCATATATGGTGGCTACTTTGAAgATGAGAACTTTATTCTCAAACACGACAGAGCCTTCCTCTTGTCAATGGCCAACCGAGGCAAGGACACTAACGGCTCCCAGTTTTTCATAACTACGAAGACAGCACCACATCTGGATGGAGTTCACGTGGTCTTCGGGTTGGTCATCTCCGGGTTTGAAGTGATAAAGAAAATCGAGGGCTTGAAGACCGACGCTGCCAGCAGGCCTTATGCAGACGTCAGAGTGATTGACTGCGGACAGCTGATTACAAAATCCGCTAACGATGTACTTGAAGGTAGGAAAAGGAAAGCTTTCTATTCTGAAGATGACTCTCGGAGTTCTTCAGAGTCGCGATGCTCCTCCTTGGAGTCCGGAGAAGAATCGGATGAACAGTATTCACGCGCCGAAAAGAAGACCTCCGCTAAGAGCAAGCATTcaaagaagagaaggaaagaagttGGGAGGAAAGAGAGACGGCGTGAGAAATCGGTTGGTGAAGGGAGCCCCTCTGAGCGAGAGATGGTAGAGGAAGAGGATGGACAGAAAGAACATAATGTAAAGAGGGAGAAGCCTATGGTGCGCccagaggagatccctcctgtgCCAGAGAACCGCTTCCTGCTCCGCCGAGACATGCCAGCACAGGAAGAGACAACAAATGTCACTGTACAGGACACAGCTAAAGTGCCAAATGACACCAAGCCAGCTGTCACAAAATCTGGTCGGAAACTAAAAGGCCGTGGCACAATGAGATACCATACCCCTACTCGGTCGATATCCCGGTCTGAATCTGAGGAGGAAAGAGGGAGCAGCGAGACTCCTCCACACTGGAAAGAGGAGATGCAGAGAACGAAGACTTATCAGCCTCCCAGCGTAGAGAAATGGAGCAAAGGAGAAAGATGGGATGACAGAAGTGGCACCCCGTGGTCAAGGTCAAGGTCCCGAGAATACTCTTCAGACCGGGCCACTGATAACTCTAGTCAGCATCACCATcacaggaaagaaaagaaaaaagccaaACGTaagaagaaagcaaagaaaCGGAAACATTCAAAAAAgcataagaaaaacaaattcagAGAGGCCTCTCTTTCAGAGGGGGAGATGTCAGTGTCATCCGGCAGAAGGTCAAAAGTCTCCAACCATCCTGAGAGGAGATCTTATTCACGCTCTCACTCCCCTTCTACTTCACGTCACTCTCGCAGGTCATATAGATCAAGGTCAAACAGGAGAAGATCCTCATCCCGTTCATCTAGAGCGTCAAGATCTTACTCTAGGTCAAGAGACAGATCCTATTCCAGAAGTCGCTGTAGATCTGGGAGTAGGTTTAGATCCTACTCAAGATCAAGGTCAAGGTCAGGAAGTCAGTCAGGACGATCTATTACGCGATCTAGGTCTGATTCCCGTTCCAGATCTAGATACAGGACAAGATCCAGAACCAGATCTAGGTCCAGGTACAGGTCACAGTCCCCATATTACAGAAAAAGGAATGCGTCAAAGCTTCCTGACAGCAGCACACAGAAGATTAAGAATCCTGTACCCACAACTGCTCAAGCTGTAGCACCCAAAGCTCCTCCATCTGCTTCTGCTGAGAGTGTCCCAGTGCTGCCTTTGAGTGACAGTCCACCACCTTCTCGATGGAAACCAGGACAAAAGCCTTGGAAACCATCTTATGTTCGAATCCAAGAGATAAAGGCAAAAAAAGACTCGCCCTCTCAGGCTCTCATGAGCCGAACTGCAGGTATGCCACTGGGGACGCTATCGAATGTTCAGAGTCAATTTGAGAAAACCACGTCTCATAAGGGTCTCAGTAGTAGCAGCCAGTACAGTGGAAAAGCCAAGCAACCTGAAGGTCTCCTCCAAAGAGGTTCATCCAGGAGTCGATCCTCCAGCCATTCAAGAAGCAGAAGTCGCTCTAGTTATCAGTCCATGTCACCTGGTCAGTACAGCAggtcttcttcctcttcctcttctagCAGGTCAGACTCTTATAATTCATACAGAAGAACGTCatcagaaaggagagagaaacgCCGTAGTTCTCACAGGAGGGACCATAAAAGGACCAAGAAAGAAGATGCATCTCCCTCCCATTCAGATGATGGAACTGATAGCACACACGGTCCTATTCAGAGACATAGTATTTCAGGGGCACAGGAAGATGCACTTGATCCTGTGCCAGATTTTCACATTAAGGCAGAAAAGAAACTCAAACCAAACAATGTCTCAGTAGTGGCTGCCACCAGTAAATCTGGATCTGGATGGGAAAGTGACAATGAACAACAGAAGCTGGCTTCTGCTGATGAGAATAAACCACCTCGAATTTCTGTTAAAGAGGAAGGTGgactttctgaaaagaaaaagatgaagaTTTGGGCTCATTGCTGGGACTCTGAAAGTGAGTCTGAAGTGCCAGCAGCAAACAATGTGGGTAGTCAAAATAAACCTTCATCGGAAAAGGAAGAGGGTGAAGCCAGTTCGGAATCTGAAAGTGAAGAACCTTCTGGGCTCTCCAACAAACCAGACCAGCTCTCCAATGTTTCAGAAGAATTCAAAAACAATGAGGAACGTTCTGATGATTATACAAAAAACGAAAAGCACAAAAGCAAGAAGGCTAAGCGTAAACACAAGCACAAAAGGAGAACTTCTGACAGGTCTGGCTCACAAAGAgtgaagacaaaaacaaaaaggtctAAGAAGAAACACCAGAAACCAAAGGAGACATTTCACTGGCAGCCTCCACTCGAGTTTGGTGATGAAGGCGAGGAGGATGATTCACTTGCTCAGGGGAAAAATATTGACCCTGCACAGCAAGGTGCTAAAAATGAAGGACTCACACAACTAGTAAAGAGCACACAACTGAAACCACAATACGTTGAAAGCAAGGACTATTCCAAGATAATTAGTGATTCATCAAAAGAAAGCTGCTCAACCGCAGAGATCTCTAAAAGTGGTGATGAGTCTGCGAACTTGACAAAAAGACAGCAATTAAAGCTAAATATTGAGGCAGCAAAAAGTCCAGCACAAAACAAACATCCACAGATTGCTTCAAGTCAGTCCAGTGTTAATGCGTCACATGCCCGAGACCAAGTAAAAGATCAAGACGATATGGAAATATGTACCCCAGAGCACAATGCAGACACCAACACCGAGCCACCTGAACCTTGTGCGGTTGACCTGCCAGCAATAAAAGATATTGTTAAGAATGGTAATCAACTTCTGCTACCTCAAACAGATCAAAAGACCTCAGGTTCAAGTCCTTCTATTTCAACTCCTGCCAACCAAGCTGGAGAAACCACACCTGGTGGCGTTGGGCTACCAGTCGATCCCAAATGGAAACCTTTAAAAGGTATGACTGTCATACCAGCTGTCAGTGCAGCACCTCTAACGATGAAAATGAACAGGCCACAAGAGCAAGGAGGGGGCAAGACTCAGGGCCTCAAGATTGAGATCAAAAGCAAAAACAGGGTCCGACCAGGATCCCTGTTTGATGAGGTGCGGAAAACAGCTCGGCTAAACCAGCGTCCCAGAAATCAGgacagttccagtgaagaggaTTCACCTGCTCCGACAGGGGAACAGGCTGGATCCCAGAAGCACTCGCGGAGTAAGTCCCGCTCGGTGTCCAGTTCCAGGCCCCGACGTCGAGACAGGTCTCGATCATACACTCACTCCAGGAGCAGGTCCAGGAGCTCCAGTTATTCTTCCAGGAGCTACAGTAGAAGTAGAAGCAGACGGAGATACAGTAGAGAACGTTCCAGATCTCGAAGTAGTAGCTACCATAGCTATCGCAGtcatacTTACAGCCGAAGTCGTTCCGGAAGTTGGTCCAGAGAACGTCGGAGGTCAAGatccTACACTTATGACAGCTACTCAAGCCGCAGCCGCAGTCGTAGCAGAAGAAGGCGACACAGACGAAGTGAAAGTTCTGATCGCAGATCTAGGTCATATCGTTCCTACAGTCGCAGTTCATCAAGGCATGGAAGTCGTAGCAGTCGATACAGCTGAGACAACCTTTGGGAGatttattgttacttttttttgtttgtttgttcattggTTATTGAAGCTAGACCAGAGTCTCACTGAGCTTCCTTTGTTTTCCATAAAGATTGTTTCGCTGAAGTCAGGTAATATGAGCCACTTTGACCTGTACACACATTTCTGTGGTACTGTTCAGTTATATACTGTTtaacttttgtgtgtttttttttttttgttttttttttaaacaaaatttttatttttcaataatagGACATATATGAATGTACAAGAACTATTTTATGCCGCCCTGTTTTGGTTTTGTATGTAATTTGTATTAAACTCTAACAAGAGCATCATGCCAGTTCAGATTGGAtgtaacacattcacacattctcCAATGGCGAGACCTCAGACACAGTAAAAACGAGTTTTAGCACAA

Function

symbol description
nktr Predicted to enable cyclosporin A binding activity and peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm and nucleus. Orthologous to human NKTR (natural killer cell triggering receptor).

NR:

description
NK-tumor recognition protein

GO: NA

KEGG:

id description
K12740 NKTR; NK-tumor recognition protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938200.2 True 4806 mRNA 0.46 18 17142461 17161207

Neighbor

gene id symbol gene type direction distance location
ctdspla ctdspl,ctdspla,LOC107701658,LOC107584947 coding downstream 68819 17030860 ~ 17073642 (-)
vill vill coding downstream 113568 17015624 ~ 17028893 (-)
dlec1 dlec1 coding downstream 153425 16960853 ~ 16989036 (-)
map3k22 map3k20,LOC108256334,LOC108439325,LOC107758305,LOC107670426,LOC107741004,LOC107701654 coding downstream 190396 16892984 ~ 16952065 (-)
slc22a13b slc22a13 coding downstream 313076 16820229 ~ 16829385 (-)
si:ch211-161h7.4 LOC108256371 coding upstream 105049 17266256 ~ 17276128 (-)
si:ch211-161h7.5 LOC108256129 coding upstream 116197 17277404 ~ 17281623 (-)
ccdc58 ccdc58,LOC107733097,LOC107701664 coding upstream 143948 17305155 ~ 17309921 (-)
kpna1 kpna1,LOC107591240,LOC107754951,LOC107733038 coding upstream 155313 17316520 ~ 17329657 (-)
qtrt2 qtrt2 coding upstream 203434 17364641 ~ 17378007 (-)
G333470 NA non-coding downstream 56257 17085883 ~ 17086204 (-)
G333454 NA non-coding downstream 104949 17037167 ~ 17037512 (-)
G333452 NA non-coding downstream 111764 17030465 ~ 17030697 (-)
G333417 NA non-coding downstream 133728 17007827 ~ 17008733 (-)
G333434 acaa1 non-coding downstream 186998 16953725 ~ 16955463 (-)
G333525 NA non-coding upstream 124546 17285753 ~ 17301996 (-)
G333527 NA non-coding upstream 132168 17293375 ~ 17298446 (-)
G333649 NA non-coding upstream 217089 17378296 ~ 17378572 (-)
G333650 ccdc191 non-coding upstream 219648 17380855 ~ 17381236 (-)
G333652 NA non-coding upstream 222535 17383742 ~ 17384023 (-)
zbtb47b zbtb47,znf652,LOC108256615 other downstream 2776 17116098 ~ 17139685 (-)
myd88 myd88 other downstream 253037 16885151 ~ 16889424 (-)
oxsr1b oxsr1,oxsr1b other downstream 262577 16829790 ~ 16879884 (-)
cpa6 cpa6,LOC106579545 other downstream 829545 16281271 ~ 16312916 (-)
sec61g NA other downstream 1523619 15615498 ~ 15618842 (-)
vipr1b vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 other upstream 24317 17185524 ~ 17239116 (-)
LOC113541127 LOC108256571 other upstream 746377 17907584 ~ 17908812 (-)
c22h11orf65 c23h11orf65 other upstream 748117 17909324 ~ 17916556 (-)
zmp:0000000991 NA other upstream 754877 17916084 ~ 17931814 (-)
mybl1 mybl1,LOC107663687,LOC107590196 other upstream 1276307 18437514 ~ 18520205 (-)

Expression


Co-expression Network