trim55b (trim55,LOC107590338,LOC107663638)


Basic Information

Item Value
gene id trim55b
gene name trim55,LOC107590338,LOC107663638
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18380291 ~ 18390865 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938222.2
GCCTGTGTGTGGGGTCAGGAacacacagtgaggaaaccacgccaccatacaccatacacaGTGTGATCAATTATAAAGCCACTGTGCAGAGAAGATCACTGTGTATAGTTTActtctcatctttctttcttttttttctttttttttttggaccatGGACATTTTggagaagcagctgatttgtcCAATTTGCCTGGAAATCTTTACAAAACCTGTAGTGATTCTGCCATGCCAACACAACCTCTGTCGGAAATGTGCAAATGACATATTTCAgGCGTCAAACCCATATCTTCCCACCAGAGGAGGGTCAGTGACTTCAGGCGGCCGTTTCAGATGCCCATCCTGCAGGCACGAGGTTGTTCTGGACCGCCATGGGGTTTACGGACTGCAGAGGAATCTTTTGGTGGAAAACATCATTGATATGTACAAACAGGAATCCACCAGTAGCAGACCTGCTCCAGAGAGGACAGATGACCAGCCCATGTGTGAGGTGCATGAGGACGAGAAGATCAACATCTACTGCTTGACCTGCAGCATCCCTACCTGCTCCTTGTGCAAGGTGTTCGGCTCTCACAAGGACTGTGAAGTGGCACCTCTCAAAAATGTATATCAAGTTCAGAAGACAGAGCTGACAGACAGCATAGCAATGATGGTGGGCAACAACGACAGGATCCAAGGCATCATTAGTCAATTGGAGGAGACCTGCCGGGCCATAGAGGAGAATGGCAGGAGGCAAAAATCACATGTGTGTGAGAAGTTTGACCACCTCTATGCCATCTTAGAGGACAGAAAAAGGGAGATGAGTCTCAAAGTGACAGCTGAGCAGGACGAAAAGCTGAACTACATCCGTGGACTCAAGAGGAAGTATGAAGATCACCTGGAGAACATGACCAAGATTGTGGAGTCAGGGATCCAAACGATGGAGGAACCAGAGATGGCTGTTTTCTTACAGACTGCAAAACCTTTGTTACAAACGATGAGCGAGGCCACGAATACATCCCACTTGGAAAAAGTGGAGCGTGGCTACGAGAGCATGGACCATTACTCCATTGACTTCAAGAAAGAACGTGGCGCTTTAAGTGCTATAAACTTCATCACAGatgaagatgaagaagaggaagatggaGATGTAGTGGGAGCAGAGAAAGAAGTCCACAAAGAACAGGCTACTTCAGGAGGAGCAAATGCAGGGTTGCTGAGCAGCCAacctgctcctcttcctctgcctCCAAATCCAGTCAAAAACACCAGCTCATAGCTCTCCAACTTCAGAATTTATTGCAGTTTACAGATTtcaatttgtatgaaaagtaACAAAAGTTAAGTTGACGATTAGGGGTGGGGTtaacatttgtctttttttaacatagtaAATTCACCTACATCTTCTTCACTAGTACAGATACATCCATCAAAGGCTTGATTTAGTGTCTACATGTGTAAATGTTCAGGCACTTATAACCTAATGAGTTATTGATAGTGATGAAGCTTGAAATATGCAGAAGTCACAACATCTACAGCCATGGCATTTGCAATATATGACCTCTTGCTATACAGGAAACTACCCTGAAAAGACAATCAGactaaacatgaataaaattcacccGACACAAAAgacaattcactgaaggggaaaggacgcggGATGTGAAAGACACAAATTACTGTAGCGCCGGTTTTATCTTGGTGACCAGTGAATTCACAAGCTTCGGTCTTGTGAGGCAGGACAGTGGTCTCTTTGGTcggaaaaaattttttttggagGAGCCTCTTATCACTGACTCATGCTCACACAGGACTTTTGCGTTGACATTTCCTAACCCCACAcctggggattttttttttattttgttgtctCGTCTAATATAATGCTAGGGTTTAAAAGGGGGTAAAATTAATCTTTTCCTTTGGTAGAATTTGCTAGAATTTTCTTGTTAGCACTTCTGAATATGGTATACTTCACAGATAGCTGATTTTCCCTGTTTttatgaactgaaaaaaaagactagCTATAAATCATAGTGGATTGGCACagagtttgtttttgtgtgatatTTTTACTCAAGTCGGCACCATCagactgtttattttaaaagtgaCAAGATCTCCTTTTAACGCATGCTCATTTCCAATGTCACTGATGTAGAATATAACATGTTTCAGTCATTCATGTTAATTTCTCCATGAGGGAATGAGGGAATGGGGTTTTCGTTATCTCTAATGCTGATTGTAATGAGGTCCAGAGATCTGGGAAAACCCTGTCCCTATGGTCTGATGTTTGTTAGCACTACTCACCTTGGtcagctgtggtataaatgcaaTGTCTgagtgatgaagtgctttgtccTGGTTTGTCTAACTGCAGTGAAGTAGATTTGACAGAACTCATGCAAACTAAAATCCAATGCTTGTCCTCACAGAAGGTCTCCAGTTGCTGTGTAGGGCACAATGAATCACACCAGCTAATTTGATTGTGTTGACCTCAGGTCAAGGAGCACAGCGTGAACATATAGTAATTACAACAGCCTGTATTTAATAGTATAAAGAGTTCAGAGGATTTTTCCCAAAAATGGAAGGAATTTTGGTTCTATACTCCACTGTGACAGTTCTATCAGGAACAGGATGTTCTGAAATGACAGATGATAATGTGAGTCGTTGTtacaaaaaaatccagatgtgATTTATTGGGACTGAAATTCGATGCTTTGTGTAGCAGCTTTTTAGGGCAATTCAGTTTTTCCCCCAAAGATGTGCTTTCTTCTGCATGTATTGTGCACAGATTTGCTCTCAGAGGATTTATCTGTGGTTTGGATGTGAGTTGCTAAAATGACCCATACAATGAAGGCTGGAAAGATTTAGGACATGATTTCTTAAAATATCTCAAAGTCTCAAATATCCCATTTATATGCAAGTATTTCTATTTACTGGTCAATTTATTGATGGCTTACCTTCCAGTGAAagtgtaaatgcataaaattatgtgGGTTGTGTATCTGCTTATCTTTCTGATGTGTCAAGTGTGTATTCACACACTCAGGACTGAGTCACGTTGTTTTGCTCTTTTCAGGGATGTAATGACTTGGACAAGAGCAGCCAagagaatatttaataatatttcagtattatGAA
>XM_026938223.2
atGGACATTTTggagaagcagctgatttgtcCAATTTGCCTGGAAATCTTTACAAAACCTGTAGTGATTCTGCCATGCCAACACAACCTCTGTCGGAAATGTGCAAATGACATATTTCAgGCGTCAAACCCATATCTTCCCACCAGAGGAGGGTCAGTGACTTCAGGCGGCCGTTTCAGATGCCCATCCTGCAGGCACGAGGTTGTTCTGGACCGCCATGGGGTTTACGGACTGCAGAGGAATCTTTTGGTGGAAAACATCATTGATATGTACAAACAGGAATCCACCAGCAGACCTGCTCCAGAGAGGACAGATGACCAGCCCATGTGTGAGGTGCATGAGGACGAGAAGATCAACATCTACTGCTTGACCTGCAGCATCCCTACCTGCTCCTTGTGCAAGGTGTTCGGCTCTCACAAGGACTGTGAAGTGGCACCTCTCAAAAATGTATATCAAGTTCAGAAGACAGAGCTGACAGACAGCATAGCAATGATGGTGGGCAACAACGACAGGATCCAAGGCATCATTAGTCAATTGGAGGAGACCTGCCGGGCCATAGAGGAGAATGGCAGGAGGCAAAAATCACATGTGTGTGAGAAGTTTGACCACCTCTATGCCATCTTAGAGGACAGAAAAAGGGAGATGAGTCTCAAAGTGACAGCTGAGCAGGACGAAAAGCTGAACTACATCCGTGGACTCAAGAGGAAGTATGAAGATCACCTGGAGAACATGACCAAGATTGTGGAGTCAGGGATCCAAACGATGGAGGAACCAGAGATGGCTGTTTTCTTACAGACTGCAAAACCTTTGTTACAAACGATGAGCGAGGCCACGAATACATCCCACTTGGAAAAAGTGGAGCGTGGCTACGAGAGCATGGACCATTACTCCATTGACTTCAAGAAAGAACGTGGCGCTTTAAGTGCTATAAACTTCATCACAGatgaagatgaagaagaggaagatggaGATGTAGTGGGAGCAGAGAAAGAAGTCCACAAAGAACAGGCTACTTCAGGAGGAGCAAATGCAGGGTTGCTGAGCAGCCAacctgctcctcttcctctgcctCCAAATCCAGTCAAAAACACCAGCTCATAGCTCTCCAACTTCAGAATTTATTGCAGTTTACAGATTtcaatttgtatgaaaagtaACAAAAGTTAAGTTGACGATTAGGGGTGGGGTtaacatttgtctttttttaacatagtaAATTCACCTACATCTTCTTCACTAGTACAGATACATCCATCAAAGGCTTGATTTAGTGTCTACATGTGTAAATGTTCAGGCACTTATAACCTAATGAGTTATTGATAGTGATGAAGCTTGAAATATGCAGAAGTCACAACATCTACAGCCATGGCATTTGCAATATATGACCTCTTGCTATACAGGAAACTACCCTGAAAAGACAATCAGactaaacatgaataaaattcacccGACACAAAAgacaattcactgaaggggaaaggacgcggGATGTGAAAGACACAAATTACTGTAGCGCCGGTTTTATCTTGGTGACCAGTGAATTCACAAGCTTCGGTCTTGTGAGGCAGGACAGTGGTCTCTTTGGTcggaaaaaattttttttggagGAGCCTCTTATCACTGACTCATGCTCACACAGGACTTTTGCGTTGACATTTCCTAACCCCACAcctggggattttttttttattttgttgtctCGTCTAATATAATGCTAGGGTTTAAAAGGGGGTAAAATTAATCTTTTCCTTTGGTAGAATTTGCTAGAATTTTCTTGTTAGCACTTCTGAATATGGTATACTTCACAGATAGCTGATTTTCCCTGTTTttatgaactgaaaaaaaagactagCTATAAATCATAGTGGATTGGCACagagtttgtttttgtgtgatatTTTTACTCAAGTCGGCACCATCagactgtttattttaaaagtgaCAAGATCTCCTTTTAACGCATGCTCATTTCCAATGTCACTGATGTAGAATATAACATGTTTCAGTCATTCATGTTAATTTCTCCATGAGGGAATGAGGGAATGGGGTTTTCGTTATCTCTAATGCTGATTGTAATGAGGTCCAGAGATCTGGGAAAACCCTGTCCCTATGGTCTGATGTTTGTTAGCACTACTCACCTTGGtcagctgtggtataaatgcaaTGTCTgagtgatgaagtgctttgtccTGGTTTGTCTAACTGCAGTGAAGTAGATTTGACAGAACTCATGCAAACTAAAATCCAATGCTTGTCCTCACAGAAGGTCTCCAGTTGCTGTGTAGGGCACAATGAATCACACCAGCTAATTTGATTGTGTTGACCTCAGGTCAAGGAGCACAGCGTGAACATATAGTAATTACAACAGCCTGTATTTAATAGTATAAAGAGTTCAGAGGATTTTTCCCAAAAATGGAAGGAATTTTGGTTCTATACTCCACTGTGACAGTTCTATCAGGAACAGGATGTTCTGAAATGACAGATGATAATGTGAGTCGTTGTtacaaaaaaatccagatgtgATTTATTGGGACTGAAATTCGATGCTTTGTGTAGCAGCTTTTTAGGGCAATTCAGTTTTTCCCCCAAAGATGTGCTTTCTTCTGCATGTATTGTGCACAGATTTGCTCTCAGAGGATTTATCTGTGGTTTGGATGTGAGTTGCTAAAATGACCCATACAATGAAGGCTGGAAAGATTTAGGACATGATTTCTTAAAATATCTCAAAGTCTCAAATATCCCATTTATATGCAAGTATTTCTATTTACTGGTCAATTTATTGATGGCTTACCTTCCAGTGAAagtgtaaatgcataaaattatgtgGGTTGTGTATCTGCTTATCTTTCTGATGTGTCAAGTGTGTATTCACACACTCAGGACTGAGTCACGTTGTTTTGCTCTTTTCAGGGATGTAATGACTTGGACAAGAGCAGCCAagagaatatttaataatatttcagtattatGAA

Function

symbol description
trim55 Enables identical protein binding activity. Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within with a positive effect on diapedesis; leukocyte migration involved in immune response; and leukocyte migration involved in inflammatory response. Predicted to act upstream of or within with a negative effect on macrophage migration. Predicted to be located in nucleus. Predicted to be active in cytoplasm.

NR:

description
PREDICTED: tripartite motif-containing protein 55-like

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10654 TRIM55, MURF2; tripartite motif-containing protein 55

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938222.2 True 3129 mRNA 0.41 8 18380291 18390865
XM_026938223.2 False 2972 mRNA 0.41 8 18380445 18390865

Neighbor

gene id symbol gene type direction distance location
trnaa-agc_16 NA coding upstream 277 18379942 ~ 18380014 (+)
trnaa-agc_15 NA coding upstream 917 18379302 ~ 18379374 (+)
dnajc5b dnajc5b,LOC107586796,LOC107663636,LOC107656153,LOC107721861 coding upstream 2095 18372722 ~ 18378196 (+)
bhlhe22 bhlhe22 coding upstream 163085 18214863 ~ 18217206 (+)
ythdf3 ythdf3,LOC107666630,LOC107705256 coding upstream 282376 18087647 ~ 18097915 (+)
si:dkey-97a13.12 NA coding downstream 5362 18396227 ~ 18432150 (+)
rrs1 rrs1,LOC107590198,LOC107721889 coding downstream 30121 18420986 ~ 18423560 (+)
sgk3 sgk3,LOC107721888,LOC107663688,LOC107666631,LOC107705243,LOC107590197 coding downstream 62242 18453107 ~ 18467245 (+)
pign pign,LOC107663715,LOC107721925,LOC107666639,LOC107705240 coding downstream 112953 18503818 ~ 18523294 (+)
LOC113541230 NA coding downstream 132289 18523154 ~ 18527695 (+)
G334120 NA non-coding upstream 55406 18296643 ~ 18324885 (+)
G334077 NA non-coding upstream 176611 18203063 ~ 18203680 (+)
G334078 NA non-coding upstream 177386 18200395 ~ 18202905 (+)
G334032 NA non-coding upstream 271487 18085319 ~ 18108804 (+)
G334028 NA non-coding upstream 300921 18079151 ~ 18079370 (+)
G334209 NA non-coding downstream 44856 18435721 ~ 18437406 (+)
G334210 NA non-coding downstream 48284 18439149 ~ 18439446 (+)
G334211 mybl1 non-coding downstream 49390 18440255 ~ 18440656 (+)
G334219 NA non-coding downstream 109918 18500783 ~ 18530907 (+)
LOC113541128 NA non-coding downstream 152497 18543362 ~ 18681823 (+)
mtfr1 mtfr1 other upstream 56996 18315354 ~ 18323295 (+)
G333943 LOC108256468 other upstream 387277 17986762 ~ 17993014 (+)
pan3 pan3,LOC107705213 other upstream 583770 17761531 ~ 17796521 (+)
rnf6 rnf6,LOC106590444 other upstream 837904 17535944 ~ 17542387 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other upstream 1078287 17285082 ~ 17302004 (+)
mcmdc2 mcmdc2 other downstream 77013 18467878 ~ 18486009 (+)
G334373 NA other downstream 302284 18693149 ~ 18717953 (+)
LOC117595806 zfhx4,LOC107590192 other downstream 321183 18712048 ~ 18747477 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other downstream 926992 19317857 ~ 19427936 (+)
G334838 NA other downstream 1185246 19576111 ~ 19577073 (+)

Expression


Co-expression Network