dnajc5b (dnajc5b,LOC107586796,LOC107663636,LOC107656153,LOC107721861)


Basic Information

Item Value
gene id dnajc5b
gene name dnajc5b,LOC107586796,LOC107663636,LOC107656153,LOC107721861
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18372722 ~ 18378196 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938225.2
CTCACTTATAGAGAGGCAACCTGATTCCAGTGACCCGTCTGCAAAACCTCGCAGAGGATCGGCACTTGCAGCATCAAAAAGTTGGGTTTTACAGGTAATGCTCAGGGAACATGAGTGAACAAAGACAGCGGGCCCTGTCCACGTCAGGCGAGGCTCTGTACCAGGTGCTTGGCCTTGACAAGAACTGCACCCATGATGACATCAAGAAATCGTACAGgaagcTCGCTTTGAAATATCACCCAGACAAGAACCCGGAGAACCCTGATGCTGCTGAGAAGTTTAAGGAGCTCAACAATGCTCACTCTGTGCTCTCAGACATCACAAAACGGAACATTTATGACAAATATGGCTCGTTGGGGCTCTATGTGGCCCAGCAGTTTGGAGAGGAGAACGTGAACACTTATTTTATGCTCTCCAGTTGGTGGGCCAAGGGTCTGTTTGCCATCTGCGGCTTGCTGACAGGCTGCTATTTCTGCTGCTGTCTGTGTTGCTGCTTCAACTGCTGCTGTGGGAAGTGTAAGCCTCGCACTCCTGGAGAGGAAGACCCCGAGTGCTATGTGTCTCCTGAAGACCTGGAAGAGCAGATTCGCACCGACTCGGAGAGggATGGTGATACTCCAGTAATGCATCAGCCAACTAACGCAAGTGAGAAGACCCAGCTAATTGGGGACGGACACCGGACATACACCTGAGAGAGAGTGTCTTTATAAACAGCACTTTCCGATATGATTCTACTTTGAATAGCTGTtgaataacttaaaaaaatatatatcatacaTGTCATAACATTAACGCTGGAATGTAATGGGGATGCACACTCTCAATGCACTAGCTGTATAGTTATGTGTCTTAATCATGGACGTTTTTCAACCAATGCTGTCTGTACATAACTTATAATGAActattactatata

Function

symbol description
dnajc5b Is expressed in neuromast and otic sensory epithelium. Orthologous to human DNAJC5B (DnaJ heat shock protein family (Hsp40) member C5 beta).

NR:

description
PREDICTED: dnaJ homolog subfamily C member 5-like

GO: NA

KEGG:

id description
K09525 DNAJC5; DnaJ homolog subfamily C member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938225.2 True 914 mRNA 0.47 5 18372722 18378196

Neighbor

gene id symbol gene type direction distance location
bhlhe22 bhlhe22 coding upstream 155516 18214863 ~ 18217206 (+)
ythdf3 ythdf3,LOC107666630,LOC107705256 coding upstream 274807 18087647 ~ 18097915 (+)
lipib LOC108256469,LOC108438884,LOC107721863,LOC107705251,LOC107590204 coding upstream 389302 17973204 ~ 17983420 (+)
zgc:112408 zgc:112408,LOC108256202,LOC108438348,LOC107721840 coding upstream 409251 17960988 ~ 17963471 (+)
chodl chodl coding upstream 421096 17942428 ~ 17951626 (+)
trnaa-agc_15 NA coding downstream 1106 18379302 ~ 18379374 (+)
trnaa-agc_16 NA coding downstream 1746 18379942 ~ 18380014 (+)
trim55b trim55,LOC107590338,LOC107663638 coding downstream 2095 18380291 ~ 18390865 (+)
si:dkey-97a13.12 NA coding downstream 18031 18396227 ~ 18432150 (+)
rrs1 rrs1,LOC107590198,LOC107721889 coding downstream 42790 18420986 ~ 18423560 (+)
G334120 NA non-coding upstream 47837 18296643 ~ 18324885 (+)
G334077 NA non-coding upstream 169042 18203063 ~ 18203680 (+)
G334078 NA non-coding upstream 169817 18200395 ~ 18202905 (+)
G334032 NA non-coding upstream 263918 18085319 ~ 18108804 (+)
G334028 NA non-coding upstream 293352 18079151 ~ 18079370 (+)
G334209 NA non-coding downstream 57525 18435721 ~ 18437406 (+)
G334210 NA non-coding downstream 60953 18439149 ~ 18439446 (+)
G334211 mybl1 non-coding downstream 62059 18440255 ~ 18440656 (+)
G334219 NA non-coding downstream 122587 18500783 ~ 18530907 (+)
LOC113541128 NA non-coding downstream 165166 18543362 ~ 18681823 (+)
mtfr1 mtfr1 other upstream 49427 18315354 ~ 18323295 (+)
G333943 LOC108256468 other upstream 379708 17986762 ~ 17993014 (+)
pan3 pan3,LOC107705213 other upstream 576201 17761531 ~ 17796521 (+)
rnf6 rnf6,LOC106590444 other upstream 830335 17535944 ~ 17542387 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other upstream 1070718 17285082 ~ 17302004 (+)
mcmdc2 mcmdc2 other downstream 89682 18467878 ~ 18486009 (+)
G334373 NA other downstream 314953 18693149 ~ 18717953 (+)
LOC117595806 zfhx4,LOC107590192 other downstream 333852 18712048 ~ 18747477 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other downstream 939661 19317857 ~ 19427936 (+)
G334838 NA other downstream 1197915 19576111 ~ 19577073 (+)

Expression


Co-expression Network