LOC113541320 (bmi1,LOC107686702,LOC107727233)


Basic Information

Item Value
gene id LOC113541320
gene name bmi1,LOC107686702,LOC107727233
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13139657 ~ 13152923 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938227.2
TTGTTTCTAACTGTGAAAGATGTGCAACAGTGTAAACCTTtgcatttcatattcatttgaTCTGTCTGATTGCAGGCTGCTGTAAGAAATGCACCTCTTCACACATGTTATGTAGTATATTCAGGCTATAATATCGCCCATGAAAAGCTGCACTGAGTCTTTTAGGGTTAAATTAACCCCAGACTTAGCCTATAGGTGATGAATTAACTCACACTGTTAATGTGTAGCTACTCCACTGGACTTGTGTGCAAATTAAACAACATAAGAGTCGGATATATTTCAACACTGGGCTGTTACTGTGCAAATATAACccctttatattttatttatttattttaacccaTTTTTTCTACATTCACGGCCGCAAAATAACGCGGAACCTGCCTCAGATCAGCTGACCGGGTCACGTGACCGAGAGCTTCTCTTCGCCTCTTTGCACAAAATGGAGTTGTCAGATTCGGTTGTAAAGGGGCTTCAAACCCTAGCAGATCCAGCTTACATGGACTTCAAATCATTCCGCATTTTCACCGAAGCGGCTTTCCGCAGTCTGCTGGCGTTTCCCACACACAGCGTTTTGGATTACCCAGAGCTGAAGAACATCGATCAAGCTCTCCTGAAACACTGTCACATTGCAGCAACAACATTTATACTGGAAGGagtaaaacaaaatgcagaCAGGTCAACTATATGCTCGTGCCTTGAAGATCTCAGATTTGACAGCGAGAGAGTGGATGCGTTTTACGAGCTCTATCAGAAAAGCAAAACTAACCTGGAAAAACTGTTGTCAAGAATGGTGAGAATAATGGGGCCTCTTCGGAACTAAATTTTAGCTGCACATTGGAGCAACTTcaggtatttttattttaataGACCTTAACCTTCCATGACGATGCATCGCACAACAAGGATCAAGATCACAGAACTAAATCCacatctgatgtgtgtgttatgcggTGGATATTTCATTGACGCAACCACAATCATAGAATGCCTGCATTCGTTTTGTAAAATGTGCATTGTCCGCTACCTGGCGACCAGTAAATACTGTCCCATATGTGATGTCCAGGTCCACAAAACAAAGCCTCTTCTCAATAttagATCTGACAAAACTCTGCAGGACATTGTGTACAAGTTGGTCCCAGGTCTTTTCAAAAATGAAATGAAACGAAGGAGAGATTTCTATGCTGAACATCCGTCAGTAGACGcTGCAAATGGTTCTAATGAGGATCGTGGTGAAGTGGCTGATGAGGATAAGAGAATCATCACAGATGATGAGATTATCAGTCTGTCAATCGAGTTCTTTGACCCCAGGGCCAAACATCAAGGTAGTGAGGGGGAGAAACAGAATAAGGATGAGGTAAACAACAAGAGGTACTTGCAGTGTCCTGCTGCCATGACTGTAATGCATTTGAGGAAATTTCTCAGAAGTAAGATGGACATACCATGTAACTTCCAGATTGAAGTGATGTATGAGGATGAGCCTCTGAAGGACTACTACACGTTAATGGACATTGCATACATTTATACATGGAGAAGGAATGGGCCGCTACCCTTGAAATATCGAGTACGTCCCAATTGCAAAAAGATGAAGATCACTCACACGCAGGACGGCTTAAGCAGTGCCAACCGCTCAGAAAGTGACTCTGCGAGTGACCAGGCCAACAGCCCGGCTGGAGCCCCGTCTACATCCTCACCACTACCGAGTCCAAGCACACCCGTCCAGTCCACTCATCCACAATTTCCCCATATTTCCAACCCAGTCAATGGCTCCTCTATGGGAAGCCCCAATCGTCAGTTTACGTTCAGCAACAAAATGCGCAAATCGTCTCTGAATGGATCCTCTACTTCTTCAGGGTGATGGGGTTAACCCTGCCTAAGCCAACTCCAGATTACCCAGCTATTTTCCATGCCAATGTCATGTCATTGTAGccattttattgtcattattcCTATTACACATGTAACTTTTAACATAGTGGAAGTGGCACATTTCATCCAATTGCTGGAGTAAATTTGGGAACGATAGCCTCATTGTGGCTCTAAGCTATGGGATTTGCAGAACATCCAAAACAGTTCGCATAATAGACTGAATCTACTTTtctatatgtattttttacttcaatttttttttt

Function

symbol description
bmi1 Enables RING-like zinc finger domain binding activity; promoter-specific chromatin binding activity; and zinc ion binding activity. Involved in several processes, including histone H2A-K119 monoubiquitination; negative regulation of macromolecule metabolic process; and positive regulation of ubiquitin-protein transferase activity. Located in cytosol and nuclear body. Part of PRC1 complex. Implicated in acute myeloid leukemia; colorectal carcinoma; and hepatocellular carcinoma. Biomarker of esophagus squamous cell carcinoma and pancreatic ductal carcinoma.

GO:

id name namespace
GO:0021549 cerebellum development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0035701 hematopoietic stem cell migration biological_process
GO:0031519 PcG protein complex cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11459 PCGF4, BMI1; polycomb group RING finger protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938227.2 True 2132 mRNA 0.43 14 13139657 13152923

Neighbor

gene id symbol gene type direction distance location
LOC113541106 NA coding downstream 10621 13080105 ~ 13129036 (-)
pdia4 pdia4,LOC107727231,LOC107686698,LOC107741760 coding downstream 62331 13067250 ~ 13077326 (-)
ezh2 ezh2,LOC107727220 coding downstream 77956 13044323 ~ 13061701 (-)
ek1 ek1,LOC108256132,LOC108434961,LOC107677298,LOC107697673,LOC107729659 coding downstream 485548 12569775 ~ 12654109 (-)
topbp1 topbp1,LOC107722031 coding downstream 1082230 12032654 ~ 12057427 (-)
mllt10 mllt10 coding upstream 34986 13187909 ~ 13258145 (-)
pip4k2aa pip4k2a,pip4k2aa,LOC107686705,LOC107695407,LOC107741799,LOC107549201,LOC107595124,LOC107727230 coding upstream 134407 13287330 ~ 13319439 (-)
zfx LOC108256485,LOC108439659 coding upstream 198418 13351341 ~ 13360097 (-)
eif2s3 eif2s3,if2g,LOC106590489,LOC107741782 coding upstream 208446 13361369 ~ 13372043 (-)
cct5 cct5,LOC107686714,LOC107695377 coding upstream 244345 13397268 ~ 13406077 (-)
G331423 NA non-coding downstream 72987 13065813 ~ 13066670 (-)
LOC117595777 NA non-coding downstream 117786 13009928 ~ 13021871 (-)
G331415 NA non-coding downstream 120853 13012852 ~ 13018804 (-)
G331274 NA non-coding downstream 445947 12691960 ~ 12693710 (-)
G331188 NA non-coding downstream 637355 12501959 ~ 12502302 (-)
G331516 NA non-coding upstream 8769 13161692 ~ 13198744 (-)
G331534 NA non-coding upstream 98090 13251013 ~ 13251562 (-)
G331535 NA non-coding upstream 107753 13260676 ~ 13261243 (-)
G331536 NA non-coding upstream 109414 13262337 ~ 13262570 (-)
LOC117595775 NA non-coding upstream 111583 13264506 ~ 13268168 (-)
LOC113541288 NA other downstream 461719 12676545 ~ 12677938 (-)
cdv3 cdv3 other downstream 1142957 11944054 ~ 11996700 (-)
G330379 NA other downstream 2056506 11082268 ~ 11083151 (-)
ackr4b ackr4 other downstream 2208882 10923126 ~ 10930775 (-)
G330185 NA other downstream 2616394 10522732 ~ 10523263 (-)
LOC113541105 NA other upstream 604735 13757658 ~ 13762615 (-)
LOC113541102 msc other upstream 1780072 14932995 ~ 14937404 (-)
LOC113541115 kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 other upstream 1809914 14962837 ~ 15065810 (-)
sec61g NA other upstream 2462575 15615498 ~ 15618842 (-)
cpa6 cpa6,LOC106579545 other upstream 3128348 16281271 ~ 16312916 (-)

Expression


Co-expression Network