hephl1a (LOC108256642)


Basic Information

Item Value
gene id hephl1a
gene name LOC108256642
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 16076891 ~ 16096771 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938236.2
CGGTTTCGTGTTGTCAAGCCAGCTGAGCACTCAGCGCGGATTTTCTGACTCCTGGctccacactctcacacacaaacacacactctcacacacacacacacacacacacacacagagccaaaaCTCCGGGCAGAGCGGCTGCGTGTTTGTGCTGCTTTCATCCGcttttcattttcctcttcaAGCAGCTCATCTGCGATTCTTCCTACAATGAATGCAAGCTTTTGGACTTTGTGTCTGACATTTCTGACCATGCACGATTTGTGCAAATGTCTTCCCAGGATATATTACATCGGGATTCGTGAGGTGGACTGGAATTACGCACCAAGCGGACGGAATCTGATCAATGGCATGCAGATCAAAGACGACGAGCATGCCTCTACATATCTGGTCAGAGGTCCATCCCGGATTGGTAGTGTATACAAAAAAGCCGTGTATATGCAGTACACAGATGAGACTTTTTCTACTGAGGTCCCTAAGCCAGACTGGCTCGGTTTCCTTGGACCCGTGATCCGTGCAGAAGTGGGTGATGACATCGTGGTACACATGAAGAACTTTGCATCTCGACCTTATTCAGTCCATCCTCATGGAGTCTTCTACGAGAAGGATTCTGAAGGTGCACTATATCCGGATGGTACATCTGGACGGAATAAGAAAGATGATTCTGTGGATCCTGGTGAAAACTACACGTACAGATGGAAGGTGACAGAAGAGTTTGCCCCTACCAAATCTGATGCCAACTGCCTCACCTGGATCTACCACTCCCATGTAGATGCGCCTAGAGACATTGCAACAGGACTTATCGGGGCTCTGCTCACCTGTAATAAGGGAGTCCTAGACAAGTCTGGAATTCGACGCTCTGATGTGGATCATGAGTTCTTCCTGATGTTCAGTGTGGTAGATGAGAATTTGAGCTGGTATCTTAATGACAACATTGAAAAGTTCAGCCCTGATGCTGCTCTTTATAAAGAAGATGAAGAATTTCGGGAGTCCAACCTCATGCACTCAATCAATGGTTACGTTTATGGTAACCTCCCTCCATTAAACGTGTGTATCGGGCACGCTGTGTCTTGGCATCTATTTGGCATTGGCAATGAAGTAGATATTCATTCTGCCTACTTTCATGGCCATACCCTGCTTGACCGTGATCACCGTACTGATGTGCTCAGCCTATTTCCTGCCACATTTGTCACCGCAAAAATGGTTCCCATGACAACAGGAACGTGGATGTTAAGTTGCCAGGTTAATGATCACATGCAAGCAGGTATGCAGGGCTTCTATCACGTTTCTTTGTGTGCGAAGGATGATACTGCACCCACAGTGCCTCCTGGCCATGAGAGACATTTCTACATCGCTGCTGAGGAGCAGAAGTGGAATTACGCCCCATCGGGGATCAATAAATTCACAGATGAACCTCTAGATAAGAAAGGAAGTGATGCTGCAGAATTCTTCAGTAAAGAGGAGGGCAGGCTGGGCGGGACGTACTGGAAAGTCAGATACGTTGCATACCACGATGACACGTTTACCACCAAGCTTGAGCAACATGGCTCAGAACACCATCTTGGCTTTCTGGGCCCAGTCATTAGAGGAGAACCTGGAGATATCATTGTGGTAACCTTTCGGAATATGGCAACACAGCACTACAGCATGCAACCTCATGGTCTGTCTTATGATAAAATTTATGAAGGGGCCATGTATCAGGATGGTTCTCAGAAAGCAGGGGCCAGTGTGGCACCAGGTCAGACGTTTACATATCGATGGCGGGTGATAGAAGGCCCTTCGCCCGGTGACCCACCCTGTTTGTCGTACTTATATTACTCAGCTACAGATCCTGTCCGTGACACCAACTCTGGGTTAGTGGGACCGTTACAGGTGTGCAAGAAAGGAGTTCTGGATGAGAGTGGTCGGCAGCATATAGGGTCGGAGGTGCAGAAAGAGTTTTTCCTACTCTTCACTGTGATCGATGAGAATGAAAGCTGGTATCTAAAGAAGAACACTGATGAGTTTGGTAGTGATGAGTCAGACCCAGAAAACCCAGTATTTCAGGAGAGCAACAAAATGCACAgtGTAAACGGTTTCATGTACGGGAACCTTCCTGCACTTGATTTGTGTGAGGGGGACCATGTTGTGTGGCACATGCTGGGCTTGGGCACAGAGGTGGATCTCCACGGCGTTTATTTCCAGGGAAACACGTTTCAGCGGGACGGCACTACACACGACACACTTAGCCTATTTCCTCACACCAGTGTCACTGTCTCCATGAGACCAGACAACAACGGTGTTTTTGAGCTGAGCTGTCGTACAACTGATCACTACCGTGGTGGCATGCTCCAGCTGTACACAGTCAAACCCTGCACACCAAGCAAGAACTCTGGATCGGAGGTTACGACGTTTGAGCCCGATGTGTATTTCTACTTGGCTGCTGAAGAAGTGGAGTGGAACTACGCCCCAAACCGGACGTGGGAGTTGGAGAAACACCACACTACTCTACGTGACAGTCCTGGGAACGTCTTTCTCAATAAATCTGAGAACCGGATTGGCCCCGAATACAAAAAGGTGGTGTACCACCAGTACACAGACGACACCTTTACACACATGAAGTCCAGAGGTCCTGATGAAGAGCATCTAGGCATTCTGGgtccCATTCTCAGGGTGGAGGTTGGTGAGAGGGTCCAGGTTGTGTTTAAGAATAAGGCATCAAAGCCATATTCAATTCATGCTCATGGTGTGAAGGCCAGTGAGAAAAACACACCTGTTTCTCCAGatAACGTCATGAGGTATAACTGGACTATCCGTTCAGGTCCTGGACGCAGTGAGCCCAACTGCATAACCTTTGCCTATTACTCATCAGCTGACTTCATCAAGGACTTGGCGAGTGGCCTGGTTGGACCGTTGGTAGTGTGTCGTAAAGGGACTCTAGACAAAGCCAACCGAAAACGAACAGATGTGGATAAAGAATTCGCTCTGCTCTTCATGGTGTTCGATGAGAATGAATCCTGGTATCTGGAGGACAATATACAAACATACCTGAACAAGACCCTAGACACTTTTGACAAAGACGATGAGGGATTTATGGAGAGTAACATGATGCACGGTATTAATGGAAAGCTGTATGCTAACCTGCCTGGATTGACGATGTGGCAAGGAGATCGGACTGAGTGGTATTTAATGGGGCTGGGAAACGAGATAGATATGCACACAGTGCACTTTCACGCTCAGAGCTTCATATACAAGacGGATTACCCCCACAGAGCTGACGTGTATGACTTGTTCCCTGGAACATTTAAGACTGTGGAACTGGTAGCTGGAACTCCTGGAACGTGGCTCCTTCACTGCCATGTGACAGACCACATCCATGCGGGCATGGAGACGACCTTCACCATCGCCAGTGACGGCTGCACATATTTACAGAGTGTTCCACAAATGCTGCTATTCATCACACTGGTGTTCTGGCTCCAGTGACTCAGAAGAGGAGATGTTTCTGGAGACCAATCAGAATTTACCACACTCCAAACTGTGAGACGAGAGGGAGGCAGAAAAGTACACAACACATGAATGCACTAGACATGAACTCGTATTTAATGAACAAATTGCATTCTACATTTATGACCAGTTGGCAAAAACAAGGAGAAGGCCTTAAGTACTTTTTTCCTCTGCATGTTTACAGGTgtagtatttttcattttttttatttaaatgaatgggAACAAGCAAGAACAGTGGCATATCCAGAACGTAATTTCAAGGTTCAgcaaatatactaaataaattgTGAGCTTTATAATTAAACTGATAACTGTAAAGTGGATTTTGAAATATatctacaatgttttttttccatgtacaCTGGAATGATTAAGCTAACTAAGCAGACTGCTGTGCTCTTTATTTCCCATGCCACAAGCATAGTGGTGCACTGAACTGAATTTGCTGACTCAACTTGAGATGCTTAGggtttataaaaaaagaaaaaaaaaaaaaaaaaaaaaaccctaa

Function

NR:

description
PREDICTED: hephaestin-like protein 1

GO: NA

KEGG:

id description
K14735 HEPH; hephaestin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938236.2 True 3996 mRNA 0.46 19 16076891 16096771

Neighbor

gene id symbol gene type direction distance location
panx1a panx1 coding upstream 446926 15620148 ~ 15629965 (+)
tpk1 tpk1 coding upstream 462000 15587302 ~ 15614891 (+)
si:ch73-173p19.1 LOC108256550 coding upstream 679364 15382986 ~ 15397527 (+)
flj11011l ube2w,LOC103354920,LOC107725703,LOC106591739,LOC107754202 coding upstream 947288 15121226 ~ 15129603 (+)
trpa1b trpa1 coding upstream 966577 15084521 ~ 15110314 (+)
LOC113541322 NA coding downstream 103725 16200496 ~ 16219013 (+)
prex2 prex2,LOC107741010,LOC107686687,LOC107758281,LOC107695383 coding downstream 230214 16326985 ~ 16443144 (+)
c22h8orf34 c23h8orf34,cunh8orf34,LOC103047203 coding downstream 347892 16444663 ~ 16529117 (+)
sulf1 sulf1 coding downstream 440882 16537653 ~ 16632052 (+)
LOC113541353 slco5a1,LOC108256392,LOC107741005,LOC107686683,LOC107584939,LOC107695420,LOC107758302 coding downstream 542334 16639105 ~ 16684971 (+)
G332788 NA non-coding upstream 35304 16041384 ~ 16041587 (+)
G332650 NA non-coding upstream 459657 15592088 ~ 15617234 (+)
LOC113541248 NA non-coding upstream 497093 15570863 ~ 15579798 (+)
LOC113541145 NA non-coding upstream 657968 15413872 ~ 15418923 (+)
G332527 NA non-coding upstream 744459 15328614 ~ 15332432 (+)
G332790 LOC108272979,LOC108266882 non-coding downstream 4979 16101750 ~ 16102212 (+)
G332791 NA non-coding downstream 5500 16102271 ~ 16102597 (+)
G332859 NA non-coding downstream 122782 16219553 ~ 16220945 (+)
G333157 NA non-coding downstream 499010 16595781 ~ 16620089 (+)
G333148 NA non-coding downstream 508377 16605148 ~ 16633783 (+)
G332636 NA other upstream 510228 15566175 ~ 15566663 (+)
stau2 stau2,LOC107691439 other upstream 761923 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other upstream 810996 15251635 ~ 15265895 (+)
G331476 NA other upstream 2818475 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 3364213 12706939 ~ 12712678 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 1003393 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 1188311 17285082 ~ 17302004 (+)
rnf6 rnf6,LOC106590444 other downstream 1439173 17535944 ~ 17542387 (+)
pan3 pan3,LOC107705213 other downstream 1664760 17761531 ~ 17796521 (+)
G333943 LOC108256468 other downstream 1889991 17986762 ~ 17993014 (+)

Expression


Co-expression Network