LOC113541334 (LOC108256505)


Basic Information

Item Value
gene id LOC113541334
gene name LOC108256505
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 11378301 ~ 11382806 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938251.2
TGGGTGTGTTAAAGGGATAAACCACACCTACACGCGTACACGCTTTGCCAACCAATCAACCAGGAAATCTCTCTATCCAGGATAAAGAAACAATAAACTTAAACAATATGATGGAGTCTaacaaattaaaagaattatCTGGAAATGATAATTTTGACACcaaagaggagaaaaaattATCTGCTTCCAACCGTCTCTCTGAGCTGCGCCTTATCCTTTTGGGCTGGCGGTGGCCTGGGAAAAGCCTGACTGGAAACTCTATCCTGGGGCGTGAAGAGTTTCGGCTGGAACGAGCATCTGAATTCTCAGTGAAGCGCGATACAGAGCGCCACGGTCGCAAGCTGACTGTTGTGGACACACCAGGCTGGTTTTCAGCTCAGACCACTCCAACTGCTTATCAACAGGAGATGGCTCGTAGCCTGGGTATGTGCCCACCGGGGCCGCATGCTTTCCTGCTTGTCGTGCCTGTAGGCATGTTCACAGACACCGACCGGGCGAGAATCGAGGAGAACTTGGTGCTGTTTGGTGAGGCTGTGTGGAGGCACACTATGGTGGTGTTTACGTGGGCCGAGGTGCTGAAGAACATGCCAATTGAGAGATATATCCGGCGCCAAGGTAGTGCACTGCAGTGGGTGCTGGACAAGTGCAAGAAGAGATACCATGTTATCAACAACGATGCCTTCGGAGAGCACACGCAGGTTCCACAGCTGATTGAGAAGGTGGAGAAGATGGTAGCTGAGGAGGGAGGGCACTTCAGACCAAtgacagaggaggagaaagcTCAAAATCAGGTTACAGCTGAAGCTACTGATGAGAACTCAAACCCGAAAGAGGTGAAAGAGAAGCGTGAGCTTGGAGCTCGACCCAAACAGAACTGTTCCTTCAGCTCAGTGTGGACTGTCGATGTGGAGAGTCCATAAAATTTGATGGAAGGAGTGTCTGATTGAAGATTGAAGGACAGGGACCAGAGAGCGAATTTGTGCTGCTTCATTACATTCCTTTATCTGATATCATTTGGTGAATATCTGCAGCTACAGGATATGACTATTTATTTACCTAAAAACAGCAAagtgatatatttattttacatactgCATGTGCTGTATATCTttaaaagagggaaaaatgaGACACCTGCTAATCAGTTGATCTGCACTACTGAAGTCATGACAGCTAGTTGTTACTCTGTTATAAtaactcattttttttactgttaggAAGAGtagttacatttttcatttttgtgtattaCTAAATCAATGTCATATCAGAATCTACAATGAATATTGCCATTGGACATTTTATAACCTACATGCAAAGCCCAATATTTTATtgctcattttcttttaaacacttaaacCACCATACTTCTGCCTTGACTCATATATATACTCTctatatatcactatatatatattttttaatatgaagtcactgaataaatgtcttttttattattgGATGTTAAAAGTGCTTTTGGGGAGCATTTTAAAAAGGAGTAGAAACATATTTTCACTGATTGCTATATTTAAGAAGACaaatttaacttttaacttttatcTTAAGTGGATCTTTTAATTGcaccaaaatataaatattcagcaGAATGTCAAACTGGACAGTGGAAAAGCTTGCACCAagacacacagtgaaacaaactGCAAAGTTTGTTCTAACTAGAACACTATTTGTTCTCAAGGTAGCAATAATACTGTACCACAGTGTAATGGTGTCATGAAGAGTTATGATTGTATTTTATtgaacacaaaaaagaaaattgagaATGTACATGGAATTAAACAATAAGTGAACTTCCATAAGAGTTGAAGAAAGTGGGTTCCATTTGGAGTTAAATATATCTGTTCATATATAagtgaattaaaaattgttaaaacaGGTTATGTAATTGCAtatctctgtgtgctgtagtttTGCAATAGaacattttatgattaaaaGAAACTGTGATCCAGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938251.2 True 1975 mRNA 0.40 3 11378301 11382806

Neighbor

gene id symbol gene type direction distance location
chmp4c chm4c,chmp4c,LOC107724563,LOC107598197,LOC107691458,LOC107748316,LOC107554719 coding upstream 3796 11370263 ~ 11374505 (+)
myrip myrip,LOC107724561 coding upstream 69689 11122395 ~ 11308612 (+)
pxdc1b pxdc1,LOC103040287,LOC107728142,LOC107554723 coding upstream 517853 10841683 ~ 10860448 (+)
prpf4bb prpf4b,prpf4bb,LOC108442973,LOC107738454,LOC107598186,LOC107670278,LOC107554722,LOC107749644 coding upstream 549910 10810606 ~ 10828391 (+)
ccr9b LOC108256084,LOC108442972 coding upstream 826283 10548728 ~ 10552018 (+)
asap1b LOC108256502,LOC108256646,LOC108434233 coding downstream 8503 11391309 ~ 11486305 (+)
fam49bb fam49bb,LOC108256504,LOC108434236,LOC103032810,LOC107724568,LOC107748306,LOC107691432,LOC103456840 coding downstream 106110 11488916 ~ 11553217 (+)
vps41 vps41,LOC107722032,LOC107558337,LOC107748298 coding downstream 517949 11900755 ~ 11943508 (+)
LOC113541340 LOC108256745,LOC108434245 coding downstream 779649 12162455 ~ 12179621 (+)
bcl2a bcl2 coding downstream 798979 12181785 ~ 12234183 (+)
G330457 NA non-coding upstream 23300 11354620 ~ 11355001 (+)
LOC113541116 NA non-coding upstream 376463 10998030 ~ 11001838 (+)
G330350 NA non-coding upstream 384048 10993824 ~ 10994253 (+)
G330260 NA non-coding upstream 390249 10986708 ~ 10988052 (+)
G330259 NA non-coding upstream 406683 10971195 ~ 10971618 (+)
G330616 NA non-coding downstream 630 11383436 ~ 11383662 (+)
G330856 NA non-coding downstream 443333 11826139 ~ 11826390 (+)
G330869 NA non-coding downstream 491186 11873992 ~ 11874192 (+)
G330908 NA non-coding downstream 512860 11895666 ~ 11895891 (+)
G330911 cdv3 non-coding downstream 561224 11944030 ~ 11946238 (+)
acad11 acad11,LOC107715568,LOC104947469 other upstream 394092 10874209 ~ 10984209 (+)
G330257 NA other upstream 403386 10973264 ~ 10974915 (+)
gli3 gli3,LOC108444237 other upstream 609941 10595130 ~ 10768360 (+)
G330038 NA other upstream 945437 10431333 ~ 10432864 (+)
cdh19 LOC108256684 other upstream 1439833 9856182 ~ 9938468 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other downstream 334609 11717415 ~ 11748559 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other downstream 679526 12062332 ~ 12156787 (+)
G331263 LOC108256200,LOC100304628 other downstream 1324133 12706939 ~ 12712678 (+)
G331476 NA other downstream 1875088 13257894 ~ 13258416 (+)
stau2 stau2,LOC107691439 other downstream 3751547 15134353 ~ 15314968 (+)

Expression


Co-expression Network