qtrt2 (qtrt2)


Basic Information

Item Value
gene id qtrt2
gene name qtrt2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17364641 ~ 17378007 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938252.2
GTGACGTAATAAATGTGCGACTCTACATCTGGGTTCGCTCATAAATCTGCGACTTGTAGTATTTGTGTTCACGTGCCTTACACAATTCTGCTGCTCATTGATGCATTTTTTTAGTTAACCACGCTCGACTGCGCCGGTGCCATGAAGCTGGAGTTGTCTAAGGTGGTGCGAGGTTGTCGTCTGGGGCTTTTGACCAGCATCGGGCAAACCGAGCAGCACTCACTGGAGGTTCCAGGCTGTTTCCTGTACACCCGCTGTGCCACCGTGCCCCATTTGACCCAggacacacttcacacactcagcaaCCTGCCTGCAGTTACACAGGTCACACTGGAGAGCCTCGCAGAGCACCAGGACGTCCTGGAGGAGTTTAAACATGGTGTGAGAAAGTTTGCAGGTCTACAGGACACGCTGCTCTTCTGCTCCCTCCATGACCCTGCCACGACCCATCCCGCTGGCCACGTCACCAACAAGACGGTGTCCGTGTGGGGCAGTGGAGGAAGAATAGAGCTGTCAGTGGCCAAGTTTATGGCCATGCAGGCAGCCATCCGGCCAGACTGCTATGAGAGCATGGCAGATGGAGAGACGTGGCAGGCGAACACATCGCGGAAGAGGGTGCGTAAAGCAGTGGAGCGCACTCTCTCACATCTGGACGAGTGTCTCGAACTGCACCATAAAACACAGGAACTGAAAGGGTGTGAGATATTCGGTGTGGTGGAGGGAGGTGACATCTTGGAGGAGAGGCTGAGGTCAGCACGCGAGACGGCCAAACGGCCCGTGGCTGGATTCGTCCTGGATGGCTTCCAGTCCACCTCCATGGAGCAGGAGCTCAGGGAGCAGCTGATCACAGCAGTGACTGCAGAGCTGCCTCAGGAAAAACCGAGGTTGTTGAGAGGCGTGGGTCGTCCAGATGAGGTCATAGCATGTGTGGAAGCTGGAGTGGATCTGTTTGAGGGCTTCTTCCCTTTTCAGGTGACGGAGAGAGGCTGTGCCCTCTGCTTCAACTACACCATCACACCTGACCCAGAGACTGCAGGTACATCTCCCCCTACAGtttTGGAATCAAATGGAGAGGAGCCTGCTGTTGAAAAGCTGAAGGAAAATGGAGATGGCAGCCCTGAAAATATGACCCGATTTGAGATGAACCTGAAGGACACAAGGTACCGGGATGATTTCCGGCCACTGGTGGACAGGTGTAGCTGTTACTGCTGTAAGAACCATAAAAGGGCTTACATCCATCATCTGCTGGTGACCAATGAGCTGTTGGCGGGGGTTTTACTGATGTTGCACAACACGGCTCACTATCTGGGATTCTTCCATGCCCTGAGGGAAGCCGTGGCCAACAACCGGCTCCGAGACTTGAAGAACAAAGTGTTACAGTGACCAATGTGGACTAGAGAACGTGGAATAAATGCAATCACTGAGGGTTCAGGGGAACAAGGAGTGTTGTGTTGAAATGCACTACATCAGTAGTACTAATCTGAAAGACAGCAATCCAATTGAAAGCAGGAAGTCCACCATCTGTAAgaaattttaaacatcattcCTGTTAATGTAGTATCATTTTTACACAAGCGTGATACGAAGAAATTTATTCATCAATGATTCAtcatattcttcttttgtcaaaggcagtTTTTAAAGGCTATGTGGAGGAAAAActtgttaatttcccctatgtatggagacttttgggacaccctgtagttgcATATTATGTATATTCATTACTCCTGGTATTCTAAATAAGGGTAAAGGTTTAGAGATGTTTATAAAGAATTTTAGTGATTTATTGGGCATAAACCTTTAACAGTTTATTATTCTACAAAGATGCACAGAATTTTAGTGCTGTTTTTCATGGCAGCTATTTTTTCAGCTCACTGTGCTCAGCATTTCATCGGTCGTTCTTCTAAATGCActtatttttaactgttaaataaacaatggGTTCTAGGAGA
>XM_026938253.2
AGGACGACGGAGCGGGTTGATGGTGACGTAATAAATGTGCGACTCTACATCTGGGTTCGCTCATAAATCTGCGACTTGTAGTATTTGTGTTCACGTGCCTTACACAATTCTGTTAACCACGCTCGACTGCGCCGGTGCCATGAAGCTGGAGTTGTCTAAGGTGGTGCGAGGTTGTCGTCTGGGGCTTTTGACCAGCATCGGGCAAACCGAGCAGCACTCACTGGAGGTTCCAGGCTGTTTCCTGTACACCCGCTGTGCCACCGTGCCCCATTTGACCCAggacacacttcacacactcagcaaCCTGCCTGCAGTTACACAGGTCACACTGGAGAGCCTCGCAGAGCACCAGGACGTCCTGGAGGAGTTTAAACATGGTGTGAGAAAGTTTGCAGGTCTACAGGACACGCTGCTCTTCTGCTCCCTCCATGACCCTGCCACGACCCATCCCGCTGGCCACGTCACCAACAAGACGGTGTCCGTGTGGGGCAGTGGAGGAAGAATAGAGCTGTCAGTGGCCAAGTTTATGGCCATGCAGGCAGCCATCCGGCCAGACTGCTATGAGAGCATGGCAGATGGAGAGACGTGGCAGGCGAACACATCGCGGAAGAGGGTGCGTAAAGCAGTGGAGCGCACTCTCTCACATCTGGACGAGTGTCTCGAACTGCACCATAAAACACAGGAACTGAAAGGGTGTGAGATATTCGGTGTGGTGGAGGGAGGTGACATCTTGGAGGAGAGGCTGAGGTCAGCACGCGAGACGGCCAAACGGCCCGTGGCTGGATTCGTCCTGGATGGCTTCCAGTCCACCTCCATGGAGCAGGAGCTCAGGGAGCAGCTGATCACAGCAGTGACTGCAGAGCTGCCTCAGGAAAAACCGAGGTTGTTGAGAGGCGTGGGTCGTCCAGATGAGGTCATAGCATGTGTGGAAGCTGGAGTGGATCTGTTTGAGGGCTTCTTCCCTTTTCAGGTGACGGAGAGAGGCTGTGCCCTCTGCTTCAACTACACCATCACACCTGACCCAGAGACTGCAGGTACATCTCCCCCTACAGtttTGGAATCAAATGGAGAGGAGCCTGCTGTTGAAAAGCTGAAGGAAAATGGAGATGGCAGCCCTGAAAATATGACCCGATTTGAGATGAACCTGAAGGACACAAGGTACCGGGATGATTTCCGGCCACTGGTGGACAGGTGTAGCTGTTACTGCTGTAAGAACCATAAAAGGGCTTACATCCATCATCTGCTGGTGACCAATGAGCTGTTGGCGGGGGTTTTACTGATGTTGCACAACACGGCTCACTATCTGGGATTCTTCCATGCCCTGAGGGAAGCCGTGGCCAACAACCGGCTCCGAGACTTGAAGAACAAAGTGTTACAGTGACCAATGTGGACTAGAGAACGTGGAATAAATGCAATCACTGAGGGTTCAGGGGAACAAGGAGTGTTGTGTTGAAATGCACTACATCAGTAGTACTAATCTGAAAGACAGCAATCCAATTGAAAGCAGGAAGTCCACCATCTGTAAgaaattttaaacatcattcCTGTTAATGTAGTATCATTTTTACACAAGCGTGATACGAAGAAATTTATTCATCAATGATTCAtcatattcttcttttgtcaaaggcagtTTTTAAAGGCTATGTGGAGGAAAAActtgttaatttcccctatgtatggagacttttgggacaccctgtagttgcATATTATGTATATTCATTACTCCTGGTATTCTAAATAAGGGTAAAGGTTTAGAGATGTTTATAAAGAATTTTAGTGATTTATTGGGCATAAACCTTTAACAGTTTATTATTCTACAAAGATGCACAGAATTTTAGTGCTGTTTTTCATGGCAGCTATTTTTTCAGCTCACTGTGCTCAGCATTTCATCGGTCGTTCTTCTAAATGCActtatttttaactgttaaataaacaatggGTTCTAGGAGA
>XM_034298202.1
AGGACGACGGAGCGGGTTGATGGTGACGTAATAAATGTGCGACTCTACATCTGGGTTCGCTCATAAATCTGCGACTTGTAGTATTTGTGTTCACGTGCCTTACACAATTCTGTTAACCACGCTCGACTGCGCCGGTGCCATGAAGCTGGAGTTGTCTAAGGTGGTGCGAGGTTGTCGTCTGGGGCTTTTGACCAGCATCGGGCAAACCGAGCAGCACTCACTGGAGGTTCCAGGCTGTTTCCTGTACACCCGCTGTGCCACCGTGCCCCATTTGACCCAggacacacttcacacactcagcaaCCTGCCTGCAGTTACACAGGTCACACTGGAGAGCCTCGCAGAGCACCAGGACGTCCTGGAGGAGTTTAAACATGGTGTGAGAAAGTTTGCAGGTCTACAGGACACGCTGCTCTTCTGCTCCCTCCATGACCCTGCCACGACCCATCCCGCTGGCCACGTCACCAACAAGACGGTGTCCGTGTGGGGCAGTGGAGGAAGAATAGAGCTGTCAGTGGCCAAGTTTATGGCCATGCAGGCAGCCATCCGGCCAGACTGCTATGAGAGCATGGCAGATGGAGAGACGTGGCAGGCGAACACATCGCGGAAGAGGGTGCGTAAAGCAGTGGAGCGCACTCTCTCACATCTGGACGAGTGTCTCGAACTGCACCATAAAACACAGGAACTGAAAGGGTGTGAGATATTCGGTGTGGTGGAGGGAGGTGACATCTTGGAGGAGAGGCTGAGGTCAGCACGCGAGACGGCCAAACGGCCCGTGGCTGGATTCGTCCTGGATGGCTTCCAGTCCACCTCCATGGAGCAGGAGCTCAGGGAGCAGCTGATCACAGCAGTGACTGCAGAGCTGCCTCAGGAAAAACCGAGGTTGTTGAGAGGCGTGGGTCGTCCAGATGAGGTCATAGCATGTGTGGAAGCTGGAGTGGATCTGTTTGAGGGCTTCTTCCCTTTTCAGGTGACGGAGAGAGGCTGTGCCCTCTGCTTCAACTACACCATCACACCTGACCCAGAGACTGCAGtttTGGAATCAAATGGAGAGGAGCCTGCTGTTGAAAAGCTGAAGGAAAATGGAGATGGCAGCCCTGAAAATATGACCCGATTTGAGATGAACCTGAAGGACACAAGGTACCGGGATGATTTCCGGCCACTGGTGGACAGGTGTAGCTGTTACTGCTGTAAGAACCATAAAAGGGCTTACATCCATCATCTGCTGGTGACCAATGAGCTGTTGGCGGGGGTTTTACTGATGTTGCACAACACGGCTCACTATCTGGGATTCTTCCATGCCCTGAGGGAAGCCGTGGCCAACAACCGGCTCCGAGACTTGAAGAACAAAGTGTTACAGTGACCAATGTGGACTAGAGAACGTGGAATAAATGCAATCACTGAGGGTTCAGGGGAACAAGGAGTGTTGTGTTGAAATGCACTACATCAGTAGTACTAATCTGAAAGACAGCAATCCAATTGAAAGCAGGAAGTCCACCATCTGTAAgaaattttaaacatcattcCTGTTAATGTAGTATCATTTTTACACAAGCGTGATACGAAGAAATTTATTCATCAATGATTCAtcatattcttcttttgtcaaaggcagtTTTTAAAGGCTATGTGGAGGAAAAActtgttaatttcccctatgtatggagacttttgggacaccctgtagttgcATATTATGTATATTCATTACTCCTGGTATTCTAAATAAGGGTAAAGGTTTAGAGATGTTTATAAAGAATTTTAGTGATTTATTGGGCATAAACCTTTAACAGTTTATTATTCTACAAAGATGCACAGAATTTTAGTGCTGTTTTTCATGGCAGCTATTTTTTCAGCTCACTGTGCTCAGCATTTCATCGGTCGTTCTTCTAAATGCActtatttttaactgttaaataaacaatggGTTCTAGGAGA

Function

symbol description
qtrt2 Predicted to enable protein heterodimerization activity and protein homodimerization activity. Predicted to be involved in tRNA-guanine transglycosylation. Predicted to act upstream of or within tRNA modification. Predicted to be located in mitochondrion. Orthologous to human QTRT2 (queuine tRNA-ribosyltransferase accessory subunit 2).

NR:

description
queuine tRNA-ribosyltransferase accessory subunit 2 isoform X3

GO:

id name namespace
GO:0008616 queuosine biosynthetic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0008479 queuine tRNA-ribosyltransferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15407 QTRT2, QTRTD1; queuine tRNA-ribosyltransferase accessory subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938252.2 True 1958 mRNA 0.48 9 17364641 17377985
XM_026938253.2 False 1956 mRNA 0.49 9 17364641 17378007
XM_034298202.1 False 1938 mRNA 0.49 9 17364641 17378007

Neighbor

gene id symbol gene type direction distance location
kpna1 kpna1,LOC107591240,LOC107754951,LOC107733038 coding downstream 34984 17316520 ~ 17329657 (-)
ccdc58 ccdc58,LOC107733097,LOC107701664 coding downstream 54720 17305155 ~ 17309921 (-)
si:ch211-161h7.5 LOC108256129 coding downstream 83018 17277404 ~ 17281623 (-)
si:ch211-161h7.4 LOC108256371 coding downstream 88513 17266256 ~ 17276128 (-)
nktr nktr,LOC107670423 coding downstream 203434 17142461 ~ 17161207 (-)
zdhhc23b zdhhc23 coding upstream 12648 17390655 ~ 17397944 (-)
gramd1c gramd1c coding upstream 22353 17400360 ~ 17415956 (-)
pdx1 pdx1,LOC107580123 coding upstream 57066 17435073 ~ 17440510 (-)
si:ch211-140b10.6 polr1d coding upstream 68511 17446518 ~ 17450424 (-)
gtf3ab LOC100305039 coding upstream 89751 17467758 ~ 17470677 (-)
G333525 NA non-coding downstream 62645 17285753 ~ 17301996 (-)
G333527 NA non-coding downstream 66195 17293375 ~ 17298446 (-)
G333470 NA non-coding downstream 278437 17085883 ~ 17086204 (-)
G333454 NA non-coding downstream 327129 17037167 ~ 17037512 (-)
G333452 NA non-coding downstream 333944 17030465 ~ 17030697 (-)
G333649 NA non-coding upstream 289 17378296 ~ 17378572 (-)
G333650 ccdc191 non-coding upstream 2848 17380855 ~ 17381236 (-)
G333652 NA non-coding upstream 5735 17383742 ~ 17384023 (-)
G333653 ccdc191 non-coding upstream 7272 17385279 ~ 17385646 (-)
G333656 NA non-coding upstream 11447 17389454 ~ 17389741 (-)
vipr1b vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 other downstream 125525 17185524 ~ 17239116 (-)
zbtb47b zbtb47,znf652,LOC108256615 other downstream 224956 17116098 ~ 17139685 (-)
myd88 myd88 other downstream 475217 16885151 ~ 16889424 (-)
oxsr1b oxsr1,oxsr1b other downstream 484757 16829790 ~ 16879884 (-)
cpa6 cpa6,LOC106579545 other downstream 1051725 16281271 ~ 16312916 (-)
LOC113541127 LOC108256571 other upstream 529577 17907584 ~ 17908812 (-)
c22h11orf65 c23h11orf65 other upstream 531317 17909324 ~ 17916556 (-)
zmp:0000000991 NA other upstream 538077 17916084 ~ 17931814 (-)
mybl1 mybl1,LOC107663687,LOC107590196 other upstream 1059507 18437514 ~ 18520205 (-)
pkia pkia,LOC107666628,LOC107705234 other upstream 1627491 19005498 ~ 19015855 (-)

Expression


Co-expression Network