si:ch211-161h7.4 (LOC108256371)


Basic Information

Item Value
gene id si:ch211-161h7.4
gene name LOC108256371
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17266256 ~ 17276128 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938256.2
TGTTGCTCATCTGCGCCAAACCGAAAGCGCggcgaagaagaagaaagaagtggGCGCGGGAATTTGTGTTGACAATTGTTTAGCGAGTTAGCGAGTTAGCTTCTTTACCGTGCGTTTGCGATTTCTTGTGTCTGGAAAATACAGCAATATTATAAAAGTCTCATTTCTAAATAAGGGAAATGTTAACTTTTATGCTGGGGCTGAGAATTTTCCAAATTGAGCCAGCTAGtcagctaatgctagctagctaaaaacaATATTGAAACCAATGAGTATCCATCGCTAAGCTAGGCTAGGCTaggctaagctaagctaagctagcgAATTTGTTCTGAATAGTTCAGCCTACAGAATAAACTCCACCGGCGCTGAAGCTTTTCTCTGACAATGGACCGAAAGATGATGAATTTGGGGAGAGCGAAAAAGAAACTTCGGTACTTTCAGTCAGAGGAAAACACTCCATGTCAGCTGAAGATTAAAGATGTCTTTAGTATGCGAGACCTTGACAATATTTTTGACGATTTAGATTCTGATCCGGGGACGCCGCTGCTCTCACCGCTGCCCAAGAGCCCGGGGTTAGACGAGCAAAATAAAGGGACCCAGTCGCCGGTTCTGAAGTCGCCCTTACCTTTCCGAGGGGAGATCAGTCCTCTCAAGGGTTCAGATGTTTTGGCAGCAGAAGCTGAGATTCAGACGGACCATTTAAACGGAAAAGGAAGCCCGTTTGAAGAAATTGCTCCTATTAAGACGTCCAGTCCGATTGAGCTGTTAGCAGTTGAAGGTGTTGTAGAGGATGCAGAAAAGCCCGAAACCTCTCCGCTGCTCTTCGGCATTGAGGATGAGGAGCCAGTTGTGGGCGACTTGAGCAAACCACAAATGAGTCAGAAATCAGAATCCTCAAAGGACGTTCCTCAGGGGGACAGCGAATCGTTGGCGTCTCCTCCAGCACGATTGGAGTTCGGAAAGCCGATAAAACAGAATGATCCTGTAACAAGctCAACACCGCTAAAAGCACCAGAAGCACCAGACCAGGTGTGCAAGACCTCGGCACCGGAACCCGAGGAAGAGTCGCAAACaGATGGGCGCCTAAGTTTATCCCCCATAGTTTTGATTCAAAAGCGTCAGCCTGAACCTCTTCCAGAGGAGCAACCTAACAAGCAGGTGCAGGAAGTGGCCGTGGAAGTCGGAGTTAAACAATCGTTGTTTCAGAAAAAGCTCAGACATTCCTTACAGCCTAAAGCCTCAGGtttcaggaaacaggaaactCTGAAACAACCAGCTCGCGCTCCCTCACCACGTATTCAGGAGGAAGACTTCATGATCCTGGAAGATGACGGTCCCATTCGCTTCACAATTCCCAGGAAGACtgagaataaagaaaaacctgCACCAGAGAGCAGGTCTGTGGAGCCGGATTTGAAAGAGAAAGCTTCTGCAAAGCAGACAGAAGAAACCGAGAGCCACAAAGATGAacccaaaaagaaaacaaaggcaAAGCGTGGAAAGGCCAGTGATATGGCCAGTAAAGACACGGTGGTTCAGTCAGCTCCAGAAGAGAGAGACGATGAAGTCAACGAAGACGTGGGAGGTGGAGAACAGATCTGTCTTTCTCCAGACACCAATCAAGATGCTGATATACCTGttacaggTAAACAGAGACCAAAAGGCAAAACCTCTAAGCCTGACCAGCAGGGCAGCAAAGATGGAAACGATGGTGGTGCCAAAATTCCAGCTGAAAAGCCTGCAGCTGAAAAGCCCACAGCCAAAACAAAGAAATCTGCAAAATTGCCCACCAATATTAATACAGAACAAGAAGAGCCTGTGTCAAGTGTGAAGAAGAAACCcactaaaataaaatctgcCATAAAGGCAGGCACACCTGAGTCTACAGGTTTAAGCTCTGCAAAACCAAAGAAACAAGATGAAGACAGGAGTGCGTTAAAGAATAAGAAACGGGCTAAAGAGCAGGAGCACGTGGCCGAGGTGCGAAATCACACTGAACCACCACCGGATCCTGCTGGGCAACCAGAGGTTCAGAGCATGAATACAGttaataaagcaaataaaggGCCTGCATCTAAGCAGCGTGCGCCAAAGAAGCCAAGAAAGGTAAAGAAGACAGAGGAAACTAAAGAAATCTTAGAGATAAAGGAGCTTCCTGTGCCTGAGCCTGATGTTTCTGCAGAGGCTTCTGCAACCagcaagaggaagagaaaacCACCTGGGGAGTGGTGGCTCGCACAACACGATGAAAACAACACGCAGGAGCAGCAAGAGGCAGTTCTCACTTCACAAGAGCTCAAATCCAACAGGAAAACCCAAAGGAAAGCTCCAGTATTAACAGACTCAACCGAGCAAGAGTCACCTACGACTTCTCAGGAAATCCAGAATGAGTCTGTTACTGTTCAAAAACTGCCCAAAAAGGTGAAGAAGTCCCAGGCTGATAAATCTCAGTCTAATCCTGCTGGTTCCCGGAAAAATCTTAAATCAGCTGGTGGCAGAAGGAAAGCAAAGGCAGGAGCTCAAGACCAGCGTGAAATGACGCCAGCTCAGATGGGTGAAGAAGAGGCGAGAGACAATGAGGCTTCAGGACAGCTCAGTCCAGTGGCATGTAGACAGCGCAGTGTAACTCCAGGAGATAAGAGGGTGTTTGATAAGATCTACACACGGGAAGGTCAGAGTGGATCAGCTCAGAAATGTCCTCCTCCAGTGTTACTTGATGCGCTGGAGAGTGTTCCAGTAAAACGCCACAGAAAACCAACCAGCAGCTGGTGGGAGGTTCCACAGTCTCAGGGACTTGTCGAGAGCTCTCAGTCTCCACAAAattcttctccacaaacatcCAGACCGCAGATGGGCCCTCCACGGCGTGCGTTTCATAAAATGGCCAGTTTACAAAAGACAGTGGGTCGtggccagaaaaaaaataaaattaacatgatTAACACTCCAAAGTCAATCAGAAGATCGTTGGCCACATTTGATGCCATATATGACTCCGGGAAACCGGGCCCCTCTACAGAGAGAGGGCAAGGAGCCTGGCAGAAGGGCCGCAGAAACTTGCTGCACTCTCTGGAGGATCAGTCGGAGCAGTCCAGTGAGAACATCCACAGCGACTGTCAGCAGCAGGCTAGCAGCCACGCTACGTttgacgtgtgtgtgagtggtgttgTTCCAGAGTCCAGTGCTGCTCGGAGGAAAGCTAATCCTCGAGCAACAAGTGGATCCAACAGAGCATCTGATTATGACATTGCTTTCAAAAGTGGTCCTTCATCACTAATTGAGCTGGAGAGATATGAAGAGCATGAGGACGTTGATTTGCCGTCATCTAGGATCATTCCTCAACCACGATTCACACCCCGTGTTCTGTCCGATTGTGATCTGTGTGGCCCTCCACTAAAGCCCATTGTTCTCGATAACGAAGACTGGGATAACCTCTGTGTTTGGTTCACTCATATCTGGCCAACCACGTCAAAAGATGGTAAAGGCATTAGCCCAGATGACTTCCActggcactgtcatgctggacgAGCCATGGGTCACATGGTCGACCTTCAGAACAACACATTCTCAAGTGGCAAGATTTTATTGGGCTCGTATATGAAGAAACCTGCGCAGTTGGATCTTAATGCCATTACtgTATTTAACGTAGCATCAAGTTGTGTGCGGGTGGAAATCGACGGCGTCAAGGAGGTCTACAACTCGGGGCAAACATTTATGGCGCCTTGTGGGCAATCGTACAGCATTCACAACATGTGCCAGGAGCCTGCTGTTTTGTGGTACCACAGGATGATACCAAATCACACAACGAACTGACATGGAAGAAGCATCACTGCAAGAAATCATGTCCTTTGGTACAAGTGTTTATGGATATGATAAGACCAAGATATTGATGTTGTAACATGAtgtaaatatattgtttttaaagtCATATGGATTTGAAAGAGCCTAAAAGGCTTAGTATTTGCCTTCAGAGGGAcagttttgctgttttaatgtaaataacattGTTGCACCGGTTACAGATTGAAAAGACAATATGACTCTCAttgttaaatttgttatttaaagcaTTGCTTCCTGTTTTTACTATGAGGCATAAATCTAGATGCAATTTTCcttcaaaatgtcaaataaaataaCTTGTCAGTAGGGGGCATTGTATCATAATGCATATGTCACCCTCAGTCCttgggtttaaaaaaagattccaGTGAAGATTCCAATGAAATTCAGGATATTTGGAGATTGTGGCTGTACGTATGTTGGATGAATCCTGATTACCTGTCAGCATCAATATGTGAAGTGGCCTCACAGCCTCTTGTTGGGCATTTAGCACATGAACATTATTAGTATTCATCTCTAACAATGCACCAGTGATGAATCTGCATTGAAAATGTGTTCTCTTAGAGATGATTGGAGTTCCACAGTCTGCTCCGTGTGCTTGAGAGCTGTCCATCTATTCCGCATGCTGAACCCTCTgtccttt

Function

NR:

description
serine/arginine repetitive matrix protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938256.2 True 4489 mRNA 0.46 18 17266256 17276128

Neighbor

gene id symbol gene type direction distance location
nktr nktr,LOC107670423 coding downstream 105049 17142461 ~ 17161207 (-)
ctdspla ctdspl,ctdspla,LOC107701658,LOC107584947 coding downstream 192614 17030860 ~ 17073642 (-)
vill vill coding downstream 237363 17015624 ~ 17028893 (-)
dlec1 dlec1 coding downstream 277220 16960853 ~ 16989036 (-)
map3k22 map3k20,LOC108256334,LOC108439325,LOC107758305,LOC107670426,LOC107741004,LOC107701654 coding downstream 314191 16892984 ~ 16952065 (-)
si:ch211-161h7.5 LOC108256129 coding upstream 1276 17277404 ~ 17281623 (-)
ccdc58 ccdc58,LOC107733097,LOC107701664 coding upstream 29027 17305155 ~ 17309921 (-)
kpna1 kpna1,LOC107591240,LOC107754951,LOC107733038 coding upstream 40392 17316520 ~ 17329657 (-)
qtrt2 qtrt2 coding upstream 88513 17364641 ~ 17378007 (-)
zdhhc23b zdhhc23 coding upstream 114527 17390655 ~ 17397944 (-)
G333470 NA non-coding downstream 180052 17085883 ~ 17086204 (-)
G333454 NA non-coding downstream 228744 17037167 ~ 17037512 (-)
G333452 NA non-coding downstream 235559 17030465 ~ 17030697 (-)
G333417 NA non-coding downstream 257523 17007827 ~ 17008733 (-)
G333434 acaa1 non-coding downstream 310793 16953725 ~ 16955463 (-)
G333525 NA non-coding upstream 9625 17285753 ~ 17301996 (-)
G333527 NA non-coding upstream 17247 17293375 ~ 17298446 (-)
G333649 NA non-coding upstream 102168 17378296 ~ 17378572 (-)
G333650 ccdc191 non-coding upstream 104727 17380855 ~ 17381236 (-)
G333652 NA non-coding upstream 107614 17383742 ~ 17384023 (-)
vipr1b vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 other downstream 27140 17185524 ~ 17239116 (-)
zbtb47b zbtb47,znf652,LOC108256615 other downstream 126571 17116098 ~ 17139685 (-)
myd88 myd88 other downstream 376832 16885151 ~ 16889424 (-)
oxsr1b oxsr1,oxsr1b other downstream 386372 16829790 ~ 16879884 (-)
cpa6 cpa6,LOC106579545 other downstream 953340 16281271 ~ 16312916 (-)
LOC113541127 LOC108256571 other upstream 631456 17907584 ~ 17908812 (-)
c22h11orf65 c23h11orf65 other upstream 633196 17909324 ~ 17916556 (-)
zmp:0000000991 NA other upstream 639956 17916084 ~ 17931814 (-)
mybl1 mybl1,LOC107663687,LOC107590196 other upstream 1161386 18437514 ~ 18520205 (-)
pkia pkia,LOC107666628,LOC107705234 other upstream 1729370 19005498 ~ 19015855 (-)

Expression


Co-expression Network