LOC113541340 (LOC108256745,LOC108434245)


Basic Information

Item Value
gene id LOC113541340
gene name LOC108256745,LOC108434245
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 12162455 ~ 12179621 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938259.2
tcgcttctgattggctgatggagCCGATCACGGAAAGCACCTGCTCCATTCTAACAGGCGCGTCTGAGTCGAGACCCATGCGCTACTGCACACACAGCACGTAGACAAGTTCAGCAAGCGCGCATCTTCTCAAATAAAGATGCTCTCTTCCCGTGTGCTGCTTCGGGGTTTGCGGGCTGAGACCGGGTTCTGGAGGAGCCTGTCCACCTCGACCAGAGCACTGGCTTCACACAGCCGCAGTGTTGATGTGATTGACTGCACTGTTCCCCAGTACAATAACCGTCTGGATACACCACTGCCTGACATTCCATTCGTCAGAACTCTCACTCCTGAGCAGAAGAAgctgaaggagaaagagaaggagtcATGGACGACACTCACCAAGGAGGAGAAACTAGCACTGTATAGACTCTCATTTGATCTGAGCTATGCAGAGATGAGGAAGGGCTCTGATGAGTGGAAGACGGTGCTGGGAGGAGTCTTCTTTTTCCTCGGCTTCACTGGCCTGGTGGTGTTGTGGCAGCGTATTTATGtGTACGGTGACGTgccacacactctttctcctGAATGGGTGGAGAAGCAAACCCAACGGATGATCGACATGAGGGTTAACCCTGTGCACGGCTTCGCTGTCAACTGGGACTATGAGAAGAAGCAGTGGAAGTAGAATCCCACTGGCTAACAGTGTATCCCGAGCCGACATTACCCCGAGGTTCAAATCTTAAcagctttaaaatatattcacacCATATatcaaataaacactgaatgaaaacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938259.2 True 778 mRNA 0.51 5 12162455 12179621

Neighbor

gene id symbol gene type direction distance location
vps41 vps41,LOC107722032,LOC107558337,LOC107748298 coding upstream 218947 11900755 ~ 11943508 (+)
fam49bb fam49bb,LOC108256504,LOC108434236,LOC103032810,LOC107724568,LOC107748306,LOC107691432,LOC103456840 coding upstream 609238 11488916 ~ 11553217 (+)
asap1b LOC108256502,LOC108256646,LOC108434233 coding upstream 676150 11391309 ~ 11486305 (+)
LOC113541334 LOC108256505 coding upstream 779649 11378301 ~ 11382806 (+)
chmp4c chm4c,chmp4c,LOC107724563,LOC107598197,LOC107691458,LOC107748316,LOC107554719 coding upstream 787950 11370263 ~ 11374505 (+)
bcl2a bcl2 coding downstream 2164 12181785 ~ 12234183 (+)
hs6st1b hs6st1b,LOC108256600,LOC108434959,LOC107558548,LOC107697682,LOC107677314,LOC107729660,LOC107590258,LOC106579591 coding downstream 248836 12428457 ~ 12499046 (+)
LOC113541349 LOC108256200 coding downstream 527318 12706939 ~ 12708003 (+)
ccl34b.4 LOC100304628 coding downstream 531005 12710626 ~ 12712651 (+)
LOC113541231 cntnap2,cntnap2a,LOC108256453,LOC108256478,LOC108256479 coding downstream 586939 12766560 ~ 13015109 (+)
G330976 NA non-coding upstream 19590 12141943 ~ 12142865 (+)
G330962 NA non-coding upstream 128396 12024576 ~ 12034059 (+)
G330911 cdv3 non-coding upstream 216217 11944030 ~ 11946238 (+)
G330908 NA non-coding upstream 266564 11895666 ~ 11895891 (+)
G330869 NA non-coding upstream 288263 11873992 ~ 11874192 (+)
G331003 NA non-coding downstream 31629 12211250 ~ 12273290 (+)
G331161 NA non-coding downstream 269141 12448762 ~ 12450347 (+)
G331277 NA non-coding downstream 553188 12732809 ~ 12733703 (+)
G331280 NA non-coding downstream 561496 12741117 ~ 12741678 (+)
LOC113541232 NA non-coding downstream 617740 12797361 ~ 12802125 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 5668 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 413896 11717415 ~ 11748559 (+)
acad11 acad11,LOC107715568,LOC104947469 other upstream 1178246 10874209 ~ 10984209 (+)
G330257 NA other upstream 1187540 10973264 ~ 10974915 (+)
gli3 gli3,LOC108444237 other upstream 1394095 10595130 ~ 10768360 (+)
G331263 LOC108256200,LOC100304628 other downstream 527318 12706939 ~ 12712678 (+)
G331476 NA other downstream 1078273 13257894 ~ 13258416 (+)
stau2 stau2,LOC107691439 other downstream 2954732 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 3072014 15251635 ~ 15265895 (+)
G332636 NA other downstream 3386554 15566175 ~ 15566663 (+)

Expression


Co-expression Network