si:ch211-161h7.5 (LOC108256129)


Basic Information

Item Value
gene id si:ch211-161h7.5
gene name LOC108256129
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17277404 ~ 17281623 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938267.2
GTATATAACACCTATAACTCAGCTTCTTTTCTTCACACTGTTTCTGAAATCTGATCACATTACCTCCAAAACAgCTGAACACAATGGGAGCTCATAGCATCGCCCGTATAGCCACTATAGTGGTCTCGGTTGTGGTATATATAGCTGGCATCACACTCAACATCCTTTCCGCGCGAGGGACGGgTCCTTTCTTGATGACAACTGGAAACATCTCTGatacatacaacacacaaaTCACTCCGTCTGGATGGACCTTCTCGATCTGGGGTGTTATCTATTTCTGGTTAACTGCTATGCTTATCTACATTGTATCTACTATATTCAGAAGGAATGCCTTTGGACCGATGTATTGCAGCCATTCAGTGCTTCCGTACGGCTTCTTCATCAGCTGGATTCTGAATATCCTGTTTAACATTAGCTGGCTTCTGCTGTGGGACAGAGAGGTGATGATCGCAGCGTTGATCATGCTTGCTTTAGTTGCATTCACAAACTACACAATGATTTTCTTCTCCTGTCGTGGACTTAAAGAATACGGCGCATGGTTAAACAAGTATCATAACAAGGATCTCTGGTGCATTCGTATACTGGTTCAGAACGGCCTGGCTGTGTACACAACGTGGACGTCTATCGCTACCCTGATTAACCTGACCATAGTGGTGAGCTACGATGCTGGAATGAGTAAATCAGGTGCAGCAACACTGTCACTCTCACTGCTGTTGGTGGAGGTCATCGTTTGGTTTGTTCTGGAGAACAGTTTTCTTGACAAGCACGTACGCTACATCCTGACCGTCTACCCTGTCATCATCGTTGCTTTATCTGGAAACATGACCAAGAATTTTGACGCTTCAGCTCCCGGAACCAACGGTGTATTTACAGcaTTGCTGCTTGCTTTAGCCTGTGTGCTGTTTGTAATAAAGGTGTGTTTGGTCATCTGGAGGCACATAAAACATCCCATCTACAgtgacacgcacacacaggaaGTCACGGCACAGATAGAGAATGCTTCAAAGCAGTAACGTTTCTCAGGGTGAACAGTAAATCTGTACCTGTAcctgtaaaatgtataaattaaatttttattgcttttgctgttataatgtattgtagaataaaataattatattgtatGATTCAGTAATTGTGGGGAAGTTAAAGCACCCAGAAACACACATGTttgatgtgcttagtgatttGGGTGCTAATAATTTGATTGCTTCT

Function

NR:

description
uncharacterized protein si:ch211-161h7.5 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938267.2 True 1218 mRNA 0.43 8 17277404 17281623

Neighbor

gene id symbol gene type direction distance location
si:ch211-161h7.4 LOC108256371 coding downstream 1276 17266256 ~ 17276128 (-)
nktr nktr,LOC107670423 coding downstream 116197 17142461 ~ 17161207 (-)
ctdspla ctdspl,ctdspla,LOC107701658,LOC107584947 coding downstream 203762 17030860 ~ 17073642 (-)
vill vill coding downstream 248511 17015624 ~ 17028893 (-)
dlec1 dlec1 coding downstream 288368 16960853 ~ 16989036 (-)
ccdc58 ccdc58,LOC107733097,LOC107701664 coding upstream 23532 17305155 ~ 17309921 (-)
kpna1 kpna1,LOC107591240,LOC107754951,LOC107733038 coding upstream 34897 17316520 ~ 17329657 (-)
qtrt2 qtrt2 coding upstream 83018 17364641 ~ 17378007 (-)
zdhhc23b zdhhc23 coding upstream 109032 17390655 ~ 17397944 (-)
gramd1c gramd1c coding upstream 118737 17400360 ~ 17415956 (-)
G333470 NA non-coding downstream 191200 17085883 ~ 17086204 (-)
G333454 NA non-coding downstream 239892 17037167 ~ 17037512 (-)
G333452 NA non-coding downstream 246707 17030465 ~ 17030697 (-)
G333417 NA non-coding downstream 268671 17007827 ~ 17008733 (-)
G333434 acaa1 non-coding downstream 321941 16953725 ~ 16955463 (-)
G333525 NA non-coding upstream 4130 17285753 ~ 17301996 (-)
G333527 NA non-coding upstream 11752 17293375 ~ 17298446 (-)
G333649 NA non-coding upstream 96673 17378296 ~ 17378572 (-)
G333650 ccdc191 non-coding upstream 99232 17380855 ~ 17381236 (-)
G333652 NA non-coding upstream 102119 17383742 ~ 17384023 (-)
vipr1b vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 other downstream 38288 17185524 ~ 17239116 (-)
zbtb47b zbtb47,znf652,LOC108256615 other downstream 137719 17116098 ~ 17139685 (-)
myd88 myd88 other downstream 387980 16885151 ~ 16889424 (-)
oxsr1b oxsr1,oxsr1b other downstream 397520 16829790 ~ 16879884 (-)
cpa6 cpa6,LOC106579545 other downstream 964488 16281271 ~ 16312916 (-)
LOC113541127 LOC108256571 other upstream 625961 17907584 ~ 17908812 (-)
c22h11orf65 c23h11orf65 other upstream 627701 17909324 ~ 17916556 (-)
zmp:0000000991 NA other upstream 634461 17916084 ~ 17931814 (-)
mybl1 mybl1,LOC107663687,LOC107590196 other upstream 1155891 18437514 ~ 18520205 (-)
pkia pkia,LOC107666628,LOC107705234 other upstream 1723875 19005498 ~ 19015855 (-)

Expression


Co-expression Network