cldn11b (cldn11)


Basic Information

Item Value
gene id cldn11b
gene name cldn11
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 20334612 ~ 20339784 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938276.2
gctgaaagtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctggcctAATGAACCATGACACCTGAATAAatacagaagaagaagaggatcAAGTGCTTCATCACTAAAGCTCCAGATTCTGCTCTGAAGATCTGAAGAACATCTCAGACTTTCAGGAGTTTTATTTTccggactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagggatcATGTCTCAGAGCTGTCGGTTGCTATGCGGTTTCTTTCTGAGCTGCTCAGGATGGATCTGTCTCATCATCGCCACCTCCACTAATGACTGGGTGATCACCTGCAGCTTCGGCCTGCACACCTGCATCAAGATGGACGAGCTGGAGTCCAAAGGCTTGTGGGCCGAGTGTGTGATCTCTACAGCGCTGTATCACTGTGCAGCTCTCAACCAGATCCTCACTTTACCTGCGTACATCCAGACGTCTCGAGCACTCATGGTGTCTGCGTCACTCCTCGGCCTGCCGTCGGTGCTGCTGGCGCTCTTGGCCACGCCCTGCGTCCGACTGGGTGACGAGAGCGACGGAACCAAACGGAAACGCGCTCTGTTCGGGGGAATCCTCACTCTGATCATGTcGGTCTGTGGTTTGGTGTCGACGGTGTGGTTCCCGATTGGAGCTCATCATGAAGATGGTCTGCTGTCGTTCGGGTTCTCTCTGTACGCTGGATGGTTGGGTTCTGCCCTCTGTTTCCTCGGGGGTTCGGTTCTGACCTGCTGCTCGGGAGGTGATGATGCTCCGGTTCAACGTCCCGAAAAGCGATTCTACTACTCCAAACAGCGCGGACTCTCCGACTCGGTCCAGGCCACAAACAGTCACGCCAAGAGCGCACACGTCTGAGAGCAGAGACGTGAACTGGAGCGGACTTCAAACAGAGAGGAATGGTTTATcgctctcattttctctctctctctctctctctctctctctctatctctctctctctatctatctctctctctctctctctctctcacacacacacactgaagcatgGGGGATTTTCCACAGTGAGATACGAGCAAAGCACAGCTTCTACTCAAAACAATTTTTATTCCAGTCTGGATGAGAAGTTTTGTCTCAGCATGGACCGAGAAAACGAGGCCAAGATTAAAAACCCTCTCTGTAATCCGTtctctttgttctttttcttttaagtcaTTTTCAGTAGTGCtgaaatttttcttttattcctaaTTCATCTCAGTCTGTGCTCAATCATCTGCTCTGGTTAGAAAGCATGGAAAgcatagaaagaaaaaaaatcagtccatATGACATGCAGAAGGCAGACAGGCAGGAAGCCAGAGGTGCAGCAAGGCCAGGTGTCTTCtccatgttttttcctgtaAAGCTCTTCACTCCTTCCTGCTCAGGATCCCTCAGGAAATCTGCAGACGCAAAGCGAGGACACCTTCAATAGCGACAGATTGGCCATTTTTCTTACATCCTTCTCTCATGTGGTTCATTAACAATAtttctgtcatgtttaattaatcctttcttttgctttgttgCTCTCGCTGGGCTTTGAACACGTAACACTATTCAgaaagcagtttaaaaaaaggagttTGGATTTTGAATGCTGTGAACTGATCACTGATCTGACCTCATGTAGTGAAGCttcaatttattattcagttattataCTTATTACACACATTCTGTAAAATATCCACATATCCACAGGGAGGCATTCCATAAACTGACACTTCTACAGATCatttcatcatatttttattttaaatatatcacTCTGGATCGGAGTAGACTACACTTACACTCTGTGTGTCGAGTCAGTGAAGTTTATGCTGAaatatattcatgaaatataaacattttcatacacatTTGAACAGCAgaaacactgagaaaaaaaacatacaagccAAATAATCAAAGAAATAACTTGATCTCAGCGTTGCAGGATATTCTGAAAAGGAATTTTAATGTGTTCAGGAAATCCAGGAATAATATTTCTAGACACTGagcctttaaaataaaacacaaactctGCAGAA

Function

symbol description
cldn11 Enables identical protein binding activity. Involved in tight junction assembly. Located in several cellular components, including lipid droplet; neurofilament; and tight junction. Implicated in hypomyelinating leukodystrophy.

NR:

description
PREDICTED: claudin-11

GO: NA

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938276.2 True 2094 mRNA 0.45 3 20334612 20339784

Neighbor

gene id symbol gene type direction distance location
si:ch211-230g15.5 phc3 coding upstream 1018 20317728 ~ 20333594 (+)
LOC113541175 LOC108256633 coding upstream 74682 20254383 ~ 20259930 (+)
tmtopsb tmtopsb,LOC108256142,LOC108440411,LOC107586803,LOC107685448 coding upstream 105672 20216094 ~ 20228940 (+)
tnk2a LOC108256568,LOC108440396,LOC107685449,LOC107725874 coding upstream 127342 20194060 ~ 20207270 (+)
tfr1b NA coding upstream 145960 20173100 ~ 20188652 (+)
LOC117595803 ghsr,LOC107685461,LOC107586810,LOC107725860,LOC107721864 coding downstream 153548 20493332 ~ 20496346 (+)
LOC117595765 NA coding downstream 240796 20580580 ~ 20581545 (+)
larp4b larp4b coding downstream 252902 20592686 ~ 20612322 (+)
dip2ca dip2c,LOC108261172 coding downstream 277960 20617744 ~ 20726105 (+)
LOC113525236 ufl1 coding downstream 671088 21010872 ~ 21024050 (+)
G335582 NA non-coding upstream 33713 20300586 ~ 20300899 (+)
G335558 NA non-coding upstream 73805 20260571 ~ 20260807 (+)
G335383 NA non-coding upstream 125995 20207524 ~ 20208617 (+)
G335379 NA non-coding upstream 142823 20091823 ~ 20191789 (+)
G335564 NA non-coding downstream 24633 20364417 ~ 20366758 (+)
G335593 NA non-coding downstream 38623 20378407 ~ 20380717 (+)
G335619 NA non-coding downstream 84428 20424212 ~ 20425303 (+)
G335681 NA non-coding downstream 189962 20529746 ~ 20530208 (+)
G335689 stag1,stag1b,LOC108434968,LOC107721913,LOC107590250 non-coding downstream 224866 20564650 ~ 20565744 (+)
lrrc34 lrrc34 other upstream 53360 20274120 ~ 20281252 (+)
mynn mynn other upstream 64047 20261868 ~ 20270565 (+)
ccl20b NA other upstream 171506 20160267 ~ 20163106 (+)
camk2n2 camk2n2,LOC108256106,LOC107590228,LOC108443638,LOC103024774,LOC107586800 other upstream 346576 19985332 ~ 19988036 (+)
smpx smpx,LOC107590224,LOC107663668,LOC107721880,LOC107705278,LOC107671350 other upstream 451776 19870381 ~ 19882836 (+)
vipr2 vipr2,LOC107656837 other downstream 404965 20744749 ~ 20764373 (+)

Expression


Co-expression Network