LOC113541349 (LOC108256200)


Basic Information

Item Value
gene id LOC113541349
gene name LOC108256200
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 12706939 ~ 12708003 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938277.2
CTTTCAGAAGGAATAGAGAACAGTTGAGAAAGTGCAGACTAACACAGCAGTGATGAGGAACCCGGCTGCCATAGTTGCCATTGCCTTTACCATCTGGATCGCAACAGATGCCGAAAAAGTGAGTCCCTGCTGTGTTGCTGTCTCCCGGTACATGGAGGACGTTACCATCACAGGTTACAGATTACAGGAGAAAAACCTTCCATGCATTAAAGCTGTTGTttttcaGACAGAAAGGGGACAGTTCTGCATTGATCCATATCAGCCCTGGGTGAAGAAGAAGATCATTGAGTTTAGGAGGtcacaaaagaacaaaatgtctcCAACCTCTGCCTCACTGCATCTGACCTCAGCACCACGCGATTCAACTGCTAGCACTCAGAGGGTGAAACAACAAACCACAGCTCACTTCAGTGAATAAAAAATTGCAGTGattgtgaaaaaacaaaaaaacttttgtatTTAAAGCtataattattttgtatttatgtcCAGTTTGCACCCATAataggtgtttatttaaaatatttataactgtaaaaaatgtataccatatatatttataactgaAAACCAatgtttgttattgttttgttgctgtttggCTACAAAAAGAGAAACCAATAAAATTGGTTCAGTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938277.2 True 640 mRNA 0.39 4 12706939 12708003

Neighbor

gene id symbol gene type direction distance location
hs6st1b hs6st1b,LOC108256600,LOC108434959,LOC107558548,LOC107697682,LOC107677314,LOC107729660,LOC107590258,LOC106579591 coding upstream 207893 12428457 ~ 12499046 (+)
bcl2a bcl2 coding upstream 472756 12181785 ~ 12234183 (+)
LOC113541340 LOC108256745,LOC108434245 coding upstream 527318 12162455 ~ 12179621 (+)
vps41 vps41,LOC107722032,LOC107558337,LOC107748298 coding upstream 763431 11900755 ~ 11943508 (+)
fam49bb fam49bb,LOC108256504,LOC108434236,LOC103032810,LOC107724568,LOC107748306,LOC107691432,LOC103456840 coding upstream 1153722 11488916 ~ 11553217 (+)
ccl34b.4 LOC100304628 coding downstream 2623 12710626 ~ 12712651 (+)
LOC113541231 cntnap2,cntnap2a,LOC108256453,LOC108256478,LOC108256479 coding downstream 58557 12766560 ~ 13015109 (+)
cul1b cul1,LOC107686696,LOC107595130,LOC107727219,LOC107741709,LOC107695409 coding downstream 313164 13021167 ~ 13042516 (+)
skida1 skida1 coding downstream 566657 13274660 ~ 13278025 (+)
armc3 armc3 coding downstream 614334 13322337 ~ 13334525 (+)
G331161 NA non-coding upstream 256592 12448762 ~ 12450347 (+)
G331003 NA non-coding upstream 433649 12211250 ~ 12273290 (+)
G330976 NA non-coding upstream 564074 12141943 ~ 12142865 (+)
G330962 NA non-coding upstream 672880 12024576 ~ 12034059 (+)
G330911 cdv3 non-coding upstream 760701 11944030 ~ 11946238 (+)
G331277 NA non-coding downstream 24806 12732809 ~ 12733703 (+)
G331280 NA non-coding downstream 33114 12741117 ~ 12741678 (+)
LOC113541232 NA non-coding downstream 89358 12797361 ~ 12802125 (+)
G331342 NA non-coding downstream 336312 13044315 ~ 13049452 (+)
G331343 NA non-coding downstream 343039 13051042 ~ 13051859 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 550152 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 958380 11717415 ~ 11748559 (+)
acad11 acad11,LOC107715568,LOC104947469 other upstream 1722730 10874209 ~ 10984209 (+)
G330257 NA other upstream 1732024 10973264 ~ 10974915 (+)
gli3 gli3,LOC108444237 other upstream 1938579 10595130 ~ 10768360 (+)
G331476 NA other downstream 549891 13257894 ~ 13258416 (+)
stau2 stau2,LOC107691439 other downstream 2426350 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 2543632 15251635 ~ 15265895 (+)
G332636 NA other downstream 2858172 15566175 ~ 15566663 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 4392161 17100164 ~ 17110027 (+)

Expression


Co-expression Network