pcyt1ba (pcyt1b,LOC107721854,LOC107590340,LOC107586799,LOC107705205)


Basic Information

Item Value
gene id pcyt1ba
gene name pcyt1b,LOC107721854,LOC107590340,LOC107586799,LOC107705205
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19498302 ~ 19506536 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938285.2
CCAGTTCAGCAGCCTGTTTCCTTGTTgctctgatggtgtgtgtacagactgtgtgtgctgtgtgaaggGGAAAAGCTGTGGCTTTGTGGATCTCTCTGCTCTGGCtggaggaggagtggaggagcATCAGGAGGagggtgtgtgagggagagGGGATCGAGGTTTCAGGGGGTTGGGAGAACATCTTCACCGGTGGAGAGAGAGGATTCAGGCAGCTCCATACTGATGCTGAGTCAGAGACAGGTGGATCCGTGGGCCTTTGTCTCTGGAGCCTCGGGAGAAGATGGAGGAGCTGGAACACACCTGCCCTCATCCTCGGACGACTCTCACAGAACCCGCCATATTTGCCCAGGAGACGAGCTGCGAGTGTCGAGCGCCCCATGAGAAGCTGAGTGTTGAACAGGCTCGACTCGGCACTCCCGTGGACAGGCCTGTGCGCGTCTATGCAGATGGGATTTTTGATCTTTTCCACTCCGGTCACGCCCGAGCGCTGATGCAGGCCAAGAACCTCTTCCCCAACACGTACCTGATAGTCGGAGTTTGCAGTGATGAACTCACTCACAAGTACAAGGGCTTCACGGTGATGACGGAGGAGGAGCGTTACGAAGCGTTACGGCACTGTCGCTACGTGGACGAGGTGGTGAGAGACGCTCCCTGGACCCTCACGCAGGAGTTCCTGGAGAAATACAAGATTGACTTTGTGGCACATGATGATATCCCATACTCCTCGGCTGGATCTGAGGATGTGTACAAACATATAAAGGAAGCAGGGATGTTTGTGCCCACTCAAAGGACAGAAGGGATTTCCACGTCTGACCTGATCACTCGTATCGTGAGAGATTACGACGTTTACGCCAGACGCAACCTGGAGCGCGGCTACACGGCCAAGGAGCTGAACGTCAGCTACATCAACGAGAAGAAGTACCGTCTGCAGAACCAGGTGGACAGGATGAAGGAGAAGGTGCGGACGGTGGAGGAAAAGTCCAAACACTTCGTGTACCGCGTGGAGGAGAAGAGCCACGACCTTATACAGAAATGGGAGGAGAAATCCCGCGAGTTTATCGGGAACTTCCTGGAACTCTTCGGTCCTGATGGCACGTGGaAGCAGATGTTTCAGGAGCGCAGTGGCCGTATGATCCAGGCGTTCTCTCCCAGCGGATCTCCGAGCAGCAGTCCTCCCAGGGATTTCTCTCCATCCCGCTCTCCCTCTCCTCCGTCCCGCTGGGTCATGCCGAGAACCTCGCCTCCCTCTTCTCCCAAAGGCGCCTCGGCCTCCATCAGCAGCATGAGCGAGGGAGACGAGGACGAGAAGTGAGGATGAGGAGCGGGGACGAGGAGCGAGGACTCACTCACCcaaaacacctcacacacacacacacacacacacacacacacacacctttcgtCTTTACCTGTACACTCCAGCAGTGACGAGCTTCACGAGTCtcctcatggggaaaaaaaaaacaaaaaacgtgtAAATATTCTGTATGCAATACGAGATCGATCACGTCCTCTTGAGCTTTTCCGATTTTAACGAGTTCATATGAAAGCCATTGATTTATTCTCTTTAGCAGAGAGGAGATGGAGgcgaggagtgtgtgagtgatttgCCTTTTCTTGCTCAGGTTTGACTGAAATGTAAAGACCGTCCGTGTGAAGTACTGTACATCTCTGTCTGAggtttttatttgcatatttcaaGACAGAGACACTTTAAGCTATTCATTCTGTTTGTTATTATCCTCCATAtcattaaaggaacagtttggaCAAATAAACCCCAAAACGTCCACAGCGTCCCTCTTAATGCCTAATCAGCGCAGTGGATCAGCTGAGACGTCTTCAGTGTCCGACGTCTGCTGCTTTAGTTTCGCGCTGAAGCTCCGAGGTCTGTTTCACAGAGACCGCGATTCACGACTTCACCAAGACTGACACCTGAATCgaaattttctcaattctatgcaaattagataaGACGCTCTAAAGATAATGtaagacaaatccaaacgatcgATTCGATCGATTCCTCGGACCAGTCCTGCGCTTGGTGCGGTGCGACGTTTCTTCACTTCcccgctcacaactttagttcttACCTGCGAATAGATCccacaaaaaaaatggaagaagaccttataactgtggtttcatcttatcctgtcatatgtGACCTTACGTTAAATGAGTATAGAGAAAATTATGTaggaaaataaatcttggaaggaagtagcagagatcttTGGTGCttttggtgagtgtatatagctAGAGAATTAGCTcgctaatctaatctaattgctaatctaatctgagaatgtaacgtaaatcaaacaactgattttcacactgattagtgttatttaaattgtgttttaCTAGCTACCTTTAGAAGCGAAATATAGCTACTAGAtctcaaacaaaaacaaaaacgatggacaggccacgcccaaaTAATAGCGATAATAATAGCTCTCGTGACACTTTGGTCTGATTATAAATTCAGGAAGCTGATATTAAATAAGCTAAATCACTTATAAATGTACAAACTCCGCCTTCAGACCTCAGGCCACGCCCCTTACCCGAGCCTGATCCTGGTGCGGAGTGAGTTCAAGATCTTACGATACGATTCGTTTCGATCGAGGAAATGCCACTGTAGGATGATTTTCACGTGCACATTTAGTGCACAGTGCTAAACTGGAAGCCATAAGGTTCCATTATTTGTTAGcaatattagcaaaaaaaaaaa
>XM_026938288.2
CCCAGTTCAGCAGCCTGTTTCCTTGTTgctctgatggtgtgtgtacagactgtgtgtgctgtgtgaaggGGAAAAGCTGTGGCTTTGTGGATCTCTCTGCTCTGGCtggaggaggagtggaggagcATCAGGAGGagggtgtgtgagggagagGGGATCGAGGTTTCAGGGGGTTGGGAGAACATCTTCACCGGTGGAGAGAGAGGATTCAGGCAGCTCCATACTGATGCTGAGTCAGAGACAGGTGGATCCGTGGGCCTTTGTCTCTGGAGCCTCGGGAGAAGATGGAGGAGCTGGAACACACCTGCCCTCATCCTCGGACGACTCTCACAGAACCCGCCATATTTGCCCAGGAGACGAGCTGCGAGTGTCGAGCGCCCCATGAGAAGCTGAGTGTTGAACAGGCTCGACTCGGCACTCCCGTGGACAGGCCTGTGCGCGTCTATGCAGATGGGATTTTTGATCTTTTCCACTCCGGTCACGCCCGAGCGCTGATGCAGGCCAAGAACCTCTTCCCCAACACGTACCTGATAGTCGGAGTTTGCAGTGATGAACTCACTCACAAGTACAAGGGCTTCACGGTGATGACGGAGGAGGAGCGTTACGAAGCGTTACGGCACTGTCGCTACGTGGACGAGGTGGTGAGAGACGCTCCCTGGACCCTCACGCAGGAGTTCCTGGAGAAATACAAGATTGACTTTGTGGCACATGATGATATCCCATACTCCTCGGCTGGATCTGAGGATGTGTACAAACATATAAAGGAAGCAGAAGGGATTTCCACGTCTGACCTGATCACTCGTATCGTGAGAGATTACGACGTTTACGCCAGACGCAACCTGGAGCGCGGCTACACGGCCAAGGAGCTGAACGTCAGCTACATCAACGAGAAGAAGTACCGTCTGCAGAACCAGGTGGACAGGATGAAGGAGAAGGTGCGGACGGTGGAGGAAAAGTCCAAACACTTCGTGTACCGCGTGGAGGAGAAGAGCCACGACCTTATACAGAAATGGGAGGAGAAATCCCGCGAGTTTATCGGGAACTTCCTGGAACTCTTCGGTCCTGATGGCACGTGGaAGCAGATGTTTCAGGAGCGCAGTGGCCGTATGATCCAGGCGTTCTCTCCCAGCGGATCTCCGAGCAGCAGTCCTCCCAGGGATTTCTCTCCATCCCGCTCTCCCTCTCCTCCGTCCCGCTGGGTCATGCCGAGAACCTCGCCTCCCTCTTCTCCCAAAGGCGCCTCGGCCTCCATCAGCAGCATGAGCGAGGGAGACGAGGACGAGAAGTGAGGATGAGGAGCGGGGACGAGGAGCGAGGACTCACTCACCcaaaacacctcacacacacacacacacacacacacacacacacacctttcgtCTTTACCTGTACACTCCAGCAGTGACGAGCTTCACGAGTCtcctcatggggaaaaaaaaaacaaaaaacgtgtAAATATTCTGTATGCAATACGAGATCGATCACGTCCTCTTGAGCTTTTCCGATTTTAACGAGTTCATATGAAAGCCATTGATTTATTCTCTTTAGCAGAGAGGAGATGGAGgcgaggagtgtgtgagtgatttgCCTTTTCTTGCTCAGGTTTGACTGAAATGTAAAGACCGTCCGTGTGAAGTACTGTACATCTCTGTCTGAggtttttatttgcatatttcaaGACAGAGACACTTTAAGCTATTCATTCTGTTTGTTATTATCCTCCATAtcattaaaggaacagtttggaCAAATAAACCCCAAAACGTCCACAGCGTCCCTCTTAATGCCTAATCAGCGCAGTGGATCAGCTGAGACGTCTTCAGTGTCCGACGTCTGCTGCTTTAGTTTCGCGCTGAAGCTCCGAGGTCTGTTTCACAGAGACCGCGATTCACGACTTCACCAAGACTGACACCTGAATCgaaattttctcaattctatgcaaattagataaGACGCTCTAAAGATAATGtaagacaaatccaaacgatcgATTCGATCGATTCCTCGGACCAGTCCTGCGCTTGGTGCGGTGCGACGTTTCTTCACTTCcccgctcacaactttagttcttACCTGCGAATAGATCccacaaaaaaaatggaagaagaccttataactgtggtttcatcttatcctgtcatatgtGACCTTACGTTAAATGAGTATAGAGAAAATTATGTaggaaaataaatcttggaaggaagtagcagagatcttTGGTGCttttggtgagtgtatatagctAGAGAATTAGCTcgctaatctaatctaattgctaatctaatctgagaatgtaacgtaaatcaaacaactgattttcacactgattagtgttatttaaattgtgttttaCTAGCTACCTTTAGAAGCGAAATATAGCTACTAGAtctcaaacaaaaacaaaaacgatggacaggccacgcccaaaTAATAGCGATAATAATAGCTCTCGTGACACTTTGGTCTGATTATAAATTCAGGAAGCTGATATTAAATAAGCTAAATCACTTATAAATGTACAAACTCCGCCTTCAGACCTCAGGCCACGCCCCTTACCCGAGCCTGATCCTGGTGCGGAGTGAGTTCAAGATCTTACGATACGATTCGTTTCGATCGAGGAAATGCCACTGTAGGATGATTTTCACGTGCACATTTAGTGCACAGTGCTAAACTGGAAGCCATAAGGTTCCATTATTTGTTAGcaatattagcaaaaaaaaaaa

Function

symbol description
pcyt1b Enables choline-phosphate cytidylyltransferase activity and identical protein binding activity. Involved in CDP-choline pathway. Located in endoplasmic reticulum.

NR:

description
PREDICTED: choline-phosphate cytidylyltransferase B-like isoform X1

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K00968 PCYT1; choline-phosphate cytidylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938285.2 True 2749 mRNA 0.48 8 19498303 19506536
XM_026938288.2 False 2723 mRNA 0.48 8 19498302 19506536

Neighbor

gene id symbol gene type direction distance location
arxa arx,arxa,LOC107586699,LOC107663641 coding upstream 61542 19429768 ~ 19436760 (+)
ndufb4 ndufb4 coding upstream 102412 19391973 ~ 19395890 (+)
LOC117595802 NA coding upstream 161652 19335026 ~ 19336650 (+)
LOC117595764 NA coding upstream 163022 19332174 ~ 19335280 (+)
ctnnd2a ctnnd2a,LOC108256437,LOC108438556,LOC107716425 coding upstream 170177 19060889 ~ 19328125 (+)
mtmr6 mtmr6,LOC107721921,LOC107705267,LOC107590218 coding downstream 72774 19579310 ~ 19593452 (+)
amer2 amer2 coding downstream 94029 19600565 ~ 19603770 (+)
LOC113541258 LOC108256477,LOC108439743,LOC107705271,LOC107721848,LOC107590344,LOC107586729,LOC107671347 coding downstream 233521 19740057 ~ 19750055 (+)
LOC113541169 klhl34 coding downstream 377511 19884047 ~ 19887557 (+)
sh3kbp1 sh3kbp1,LOC107590295 coding downstream 544200 20050736 ~ 20112391 (+)
G334733 NA non-coding upstream 146550 19345889 ~ 19351752 (+)
G334575 NA non-coding upstream 565051 18933049 ~ 18933251 (+)
G334573 NA non-coding upstream 565592 18932502 ~ 18932710 (+)
G334386 NA non-coding upstream 644299 18761089 ~ 18854003 (+)
LOC117595807 NA non-coding upstream 792209 18705292 ~ 18706093 (+)
LOC117595782 NA non-coding downstream 14829 19521365 ~ 19522260 (+)
G334806 NA non-coding downstream 54566 19561102 ~ 19589060 (+)
G334888 NA non-coding downstream 198149 19704685 ~ 19707006 (+)
G335214 NA non-coding downstream 259934 19766470 ~ 19766826 (+)
G335215 NA non-coding downstream 260927 19767463 ~ 19768343 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other upstream 70366 19317857 ~ 19427936 (+)
LOC117595806 zfhx4,LOC107590192 other upstream 750825 18712048 ~ 18747477 (+)
G334373 NA other upstream 780349 18693149 ~ 18717953 (+)
mcmdc2 mcmdc2 other upstream 1012293 18467878 ~ 18486009 (+)
mtfr1 mtfr1 other upstream 1175007 18315354 ~ 18323295 (+)
G334838 NA other downstream 69575 19576111 ~ 19577073 (+)
cip2a kiaa1524 other downstream 130332 19636868 ~ 19703804 (+)
si:ch73-264p11.1 sh21b other downstream 171945 19678481 ~ 19683870 (+)
G335231 NA other downstream 282047 19788583 ~ 19789058 (+)
smpx smpx,LOC107590224,LOC107663668,LOC107721880,LOC107705278,LOC107671350 other downstream 363845 19870381 ~ 19882836 (+)

Expression


Co-expression Network