washc5 (kiaa0196,strumpellin)


Basic Information

Item Value
gene id washc5
gene name kiaa0196,strumpellin
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5493229 ~ 5512596 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034297800.1
ATGTCGTCGACCGTTTAGCATTAGCGGAAGCGTTGTCATATGACAGTCACGTGACTGGGAAGCGGAAAACAGATGAGAGGTGCTTTGGCAGTTTATCAGCTCCAGTATCGTACTGTTGGATGCTTTCCCGGAGTCTGTTGCTGCCACGATGGACTTCCTTGCCGAGAATAACCTGTGCGGCCAGGCCATCCTGAGGATCGTGTCCCGGGGAAACGCCATCATCGCTGAGCTGCTGCGCCTCTCCGACTTCATCCCCACTGTGTTCAGGCTCCGAGACAAGAGCGACCAGCAGAAATATGGAGACATCATCTGCGACTTCAGCTACTTCAAGGGTCAAGAGTACTACGAGAGCAAGCTTGAGGCCAAGCCAGAACTTCAGGACCTGGACGAGGAGTTCCGGGAAAACAACATTGAAATATTGTCTCGCTTTTATCTGGCCTTCGAAAGTGTCCATAAATACATTGTGGACTTAATAAGGTACCTGGATGACCTTAATGAAGGTGTCTACATTCAGCAGACTCTGGAAACAGTCCTGCTCAACGAAGATGGAAAACAGCTTTTGTGTGAAGCTCTGTATCTGTACGGCGTCATGCTGTTGGTTATAGATCAGAAAATAGAAGGAGAAGTCAGAGAGAGGATGCTGGTGTCTTACTACAGATACAGtgCTGCTCGATCCTCAGCAGACTCAAATCTGGATGATATCTGTAAACTCTTAAGAAGCACCGGTTACTCCAGTAACCCCGGGGCTAAACGGCCCAATAACTACCCCGAAAGCTACTTCCAGAGAGTCCCCATCAGCTCCACCTTCATCAGCATGGTCATAGGCCGCCTGCGCTCCGACGACATCTACAACCAGGTTTCTGCTTATCCACTGCCGGAGCACCGGAGCACTGCACTGGCCACCCAAGCGGCCATGCTGTATGTCTGCCTGTACTTCTGTCCCTCcatcttacacacacagcaggccaAGATGAGGGAGATTGTGGACAAGTACTTCCCTGATAACTGGGTCATCAGTATATACATGGGCATCACTGTGAACTTAGTGGAGGCATGGGAGCCTTATAAAGCAGCCAAGACTGCACTGAACTACACCCTGGATGCAGCAAACATCAGagagcagGCTTCTCGCTATGCCTCCAGCGTGGAGACCCTCCGGCCGCAGGTGCAGCAGCTGCTGAAGGAGGGCTTCCTGAGGGAGGAGATCGTCCTGGACAACATCCCCAAACTGCTGAACTGCCTGCGGGACTGCAACGTCGCCATCCGCTGGCTGATGCTGCACACTGCAGAGTCAGTGTATGATCCGAACAACAAGAGACTGCGTCAGATCAAAGATCAAGCGATCAGTGACTCTAAATACAGCCCCAAGATCTTGTTTCAGCTGCTCCTGGACACGGCTCAGTTTGAGTTCATACTCAAAGAAATGTTCAAGCAGATGTTGGCCGAAAAACAGCTGAAATGGGAGAGCTATAAGAAAGAGGGATCGGAGAGGATGACTGAACTGGCTGAGGTGTTTTCTGGGGTCAAGCCTCTCACCAGGGTGGAGAAAAACGAAAACCTGCAGGCGTGGTTCAGAGAGATCGCTAAACAGATCGAGTCTCTGAACTATGAAGACTCCACAGCAGCAGGGAGGAAGACGGTGCAGCTCATTCAGGCTCTAGTAGAAGTGCAGGAGTTCCACCAGCTGGAGTCGAACCTGCAGGTGTGTCAGTTCCTGGCTGACACACGCAAGTTCCTGCACCAGATGATTCGCACAATCAACATTAAAGAGGAGGTGCTGATCACCATGCAGATTGTGGGGGATTTGTCGTACGCTTGGCAACTTATAGATAGTTTCACATCCATCATGCAGGAGAGTATCCGAGCCAACCCGTCCATGGTCACCAAACTCCGAGCAACGTTTCTGAAGTTGGCCTCAGCTCTGGATCTTCCCCTCATGCGCATCAATCAGGCCAACAGCCCTGATCTGCTCAGCGTGTCGCAGTTCTACTCCGGAGAGCTGGTGGCCTACGTCAGAAAGGTTCTGCAGATCATTCCAGAAAGCATGTTCACCTCGCTGGCTAAAATCATCAAGCTGCAGATCCATGACATCATGGAGGTTCCTACACGGCTGGACAAGGACAAGCTGAAGGACTACGCCCAGCTCGGGGCGCGCTATGAGGTTGCCAAACTCACCCACGCCATTTCCATCTTCACTGAGGGAATTCTGATGATGAAAACAACACTTGTCGGAATCATTAAGGTGGATCCCAAGCAGCTGCTGGAGGATGGAATAAGGAAGGAGCTTGTTAAACGAGTTGCTTTTTCTCTACACAAAGGCCTCATCTTTAACCCTAAAGCTAAACCCAGCGAGCTGATGCCCAAGCTGAAGGAAATGGCCGCCACCATGGACGGCTTCTATCGCTCCTTCGAGTACATCCAGGACTACGTCAGCATCTACGGCCTGAAGATCTGGCAGGAAGAGGTTTCCCGCATCATCAACTACAACGTGGAGCAGGAGTGCAACAGCTTCCTCAGGACCAAGATCCAAGACTGGCAGAGCATCTACCAATCGACACACATTCCCATTCCCAAATACCCGCCAGTGGACGAGTCGGCCACTTTCATTGGCCGTCTCTGCAGGGAGATCTTGAGGATCACTGATCCGAAAGCAACATGTTATATAGATCAGATGAACACCTGGTATGACATGAAGACGCACCAGGAAGTGACCAATAACAGGCTGTTCTCAGAGATCCAGGACACTCTGGGCACATTTGGCCTGAACGGACTCGACCGTCTCCTGTGCTTTATGATCGTCAAGGAGCTACAGACTTTCCTGAATGTACTTCAGAAGATCATCCTCAAGGACAAAGCCGTGGTTGACATCTTTAAAGCTCTGCTGAATGCTGTGAACCCGGtgaaaggcattgtggCCACAGCAAGCAAAGTGTACACTAACGCTGTAGCCAAAACCCAGAAGATCTGGCCAGCATATCTGGAGTCCATTATGAAgGTTGGTCAGATGCAGATCCTGAGGCTACAGATAGCAAATGAGTTGAACTACTCCTGCAAGTTTGACTCCAAACATCTCGCAGCAGCTCTGGAGAATCTGAACAAATCTCTGCTCGCTGATATTGAAGCTCACTACCAGGACCCGAGCCTGCCGTACCCTAAAGAGGACAACACCCTGCTCTACGAGTTCACAGCCTATCTGGAAGCAGCTGGAATACACAACCCACTGAACAAAATCTACATCACCACCAAGCGCCTGCCGTACTTCCCTACTGTcaacttcctcttcctcatcgcCCAGCTGCCCAAACTCCAGTACACTAAAAACCAAGGAATGACCTGCCGGAGAGCAGCTGATCCGGTGGACTGGGTTCCTCTCGTCCTGGGTTTACTGACGCTGCTCAAACAGTTTCACTCCAGATACACCGAGCAGTTCCTGGCTCTCATTGGCCAGTTCATCCGCTCCATTATGGAGCAGTGCACCAGTCAAAAGATCCCCGACATGCCAGCTGATGTGGTAGGAGCATTGATGTTTTTGGAAGACTATGTGCGCTATACAAAGCTATCCAGAAAGGTGGTGGAAGCTCACATCCCAAGTTTCATTTTTGATGAATTTAGAACCGTGTTGCAATGATTTCTTTTGtccacattaacacatttaGCCAAATAACCATTTGCGTTaccattttgccttttttcctACATGACTAACAATTAGTTAGTTATTAAAAGTGTAATTACTGTAACATTTTCATCTGTAGTGTTTCTTAATTTTCTGTTCCAATGCAGCTATACTGAATGTAGAGATATTTGTAATAAGatgttgtaaataaatgtttcactgaagaca

Function

NR:

description
WASH complex subunit 5

GO:

id name namespace
GO:0007409 axonogenesis biological_process
GO:0060047 heart contraction biological_process
GO:0071203 WASH complex cellular_component

KEGG:

id description
K18464 RTSC, SPG8; WASH complex subunit strumpellin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034297800.1 True 3844 mRNA 0.49 29 5493229 5512596

Neighbor

gene id symbol gene type direction distance location
cldn12 cldn12 coding downstream 30193 5458233 ~ 5463036 (-)
slc25a40 slc25a40,LOC107666862,LOC107592430 coding downstream 92373 5391417 ~ 5400856 (-)
abcb4 abcb1,abcb4,LOC107549227,LOC107738866,LOC107689873 coding downstream 143396 5332129 ~ 5349833 (-)
rpp38 rpp38 coding downstream 184125 5307441 ~ 5309104 (-)
si:dkey-65b12.6 LOC108256587 coding downstream 276929 5205561 ~ 5216300 (-)
LOC113532914 LOC108256385,LOC108440755,LOC103044808 coding upstream 2246 5514842 ~ 5522545 (-)
LOC113532747 atad2 coding upstream 10197 5522793 ~ 5540977 (-)
psma2 psma2,si:rp71-45k5.4,LOC108440756,LOC107592434,LOC107686300,LOC103045926,LOC107714337,LOC107724313,LOC108425697 coding upstream 28761 5541357 ~ 5546339 (-)
zmp:0000000930 LOC108256382 coding upstream 42131 5554727 ~ 5562010 (-)
oxr1a oxr1 coding upstream 91093 5603689 ~ 5779393 (-)
G327100 NA non-coding downstream 99647 5392222 ~ 5393582 (-)
G326995 NA non-coding downstream 178574 5314207 ~ 5314655 (-)
G326989 NA non-coding downstream 182964 5310049 ~ 5310265 (-)
G326981 NA non-coding downstream 197997 5294732 ~ 5295232 (-)
G326960 NA non-coding downstream 235953 5257051 ~ 5257276 (-)
G327362 NA non-coding upstream 225941 5738537 ~ 5739588 (-)
G327505 NA non-coding upstream 323474 5836070 ~ 5836306 (-)
G327507 NA non-coding upstream 324893 5837489 ~ 5837782 (-)
G327508 NA non-coding upstream 325287 5837883 ~ 5838277 (-)
G327560 NA non-coding upstream 570770 6083366 ~ 6084649 (-)
ubr5 ubr5 other downstream 515702 4932155 ~ 4977527 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other downstream 1145976 4308606 ~ 4347253 (-)
vsig10l vsig10l other downstream 1527114 3957497 ~ 3966115 (-)
znf385d znf385d other downstream 1696861 3720689 ~ 3796368 (-)
LOC113532799 rftn1 other downstream 2088811 3319544 ~ 3404418 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other upstream 316878 5829474 ~ 5978379 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other upstream 743807 6256403 ~ 6383588 (-)
G328342 LOC108256401 other upstream 1544198 7056794 ~ 7062428 (-)
sec61b sec61b,LOC102796100 other upstream 1866135 7378731 ~ 7386347 (-)
LOC113541109 NA other upstream 4638901 10151497 ~ 10156800 (-)

Expression


Co-expression Network