LOC113524801


Basic Information

Item Value
gene id LOC113524801
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 460213 ~ 466623 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034297821.1
TAAGTGACATGGTCACGAGAGAAGCTTCACGGCGCTCACCACTGAGAAAAAGTCGAGcTTTGGAGTGAAATCTGCAGGCAGCATGAAGGAGTTGataTTTTGTGTGATCTTGATTGCTACTGGAGCTTTGGCTCAGAAAGAAGAAATTCAGCTCGAGAAAATTGAAATTCCTCCTTGTCCCAGGCtTTGTTACACTCGGTGGTTTGACCGTGACAACCCCAGTGGGTTTGGAGATTACGAAACTCTCATCAACCTGAGAGCGGAGAACCCGGGGAAGATCTGCGATTATCCTTACTCCATTCAGGTTCAGACGCTCTCTGGACAAGACGCTTCAACCACTGGACAAGTGTTTGCATActctgaCACAGTGAATGGTTTTGCCTGTGTGAATGCTCAGCAACCAAAGGGCAAAAGGTGTTTGGACTACAAGGTGCGCTTCGTATGCCCATGTCCAAAGTTGGAACTTGCAGAAGACACTCTCATCCAGGAAACTGAGAAGCCTCATGGGCCTTCAGGGTGTGTCGACTGGAAAGATATGAGGTTCTGTTTTGGAGTGAAGACTGCAGGCAGCATGAAGGAGTTGATCTTTGGTGTGTTCTTGGTTACAATGGGAGTCTTCTCTCAAAGTTGGGCGATTCCACCTCCAGGTCTTCCAGTGAAACtttgTTACACTCAGTGGTTTGACCGTGACAATCCTAGTGGATTAGGAGATTATGAAACACTCGACCAGCTGAGGGCGGAATATCCAGGGACAATCTGTCCCAAGCCTTTAACCATTGAAGCTCAGACTGTCTCTGGTACTCCAGCCTCAAGCACTGGACAAGTGTTTCAATActacGACACGGTGTATGGCTTCGCCTGTGTGAATTCTCAGCAGAGGAGGAGAAGCTGTCTGGATTATGAGGTGCGTTTTGGATGCCGGTGTCCTTGGCCCCGAGGTTCGCTGGTCAACCTGTGACTCGAGTGAACGTGTTGCCCTTTGTTTCTTCAGGCATCTTATTGTAACATTGCTAATTCCTATCGCTTCATGTGTCTCTTAACTCAAATGTGTATTAGGAATATGTACAGAATGAAAACTCTTTTGAAGAGTAATCACATGAGCAATTTGTATGCCCTGTAATGAGaaactgaatgaataaaaaaaaaatgttcagtccT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034297821.1 True 1158 mRNA 0.46 12 460213 466623

Neighbor

gene id symbol gene type direction distance location
LOC117595771 NA coding upstream 3234 455516 ~ 456979 (+)
dpy19l1l dpy19l1 coding upstream 109664 333684 ~ 350549 (+)
zgc:114181 LOC108261199 coding upstream 228719 222517 ~ 231494 (+)
ethe1 ethe1,LOC106582613,LOC106605166 coding upstream 345067 108218 ~ 115146 (+)
LOC113525556 LOC108278024 coding upstream 352415 96799 ~ 107798 (+)
ppox ppox coding downstream 3333 469956 ~ 483298 (+)
zgc:162160 LOC108256255,LOC108437392,LOC107719116,LOC107666762,LOC107737835,LOC107592933 coding downstream 38691 505314 ~ 524157 (+)
etsrp LOC108256243 coding downstream 184295 650918 ~ 657392 (+)
pycard NA coding downstream 191858 658481 ~ 663976 (+)
LOC113524791 LOC108256242 coding downstream 208245 674868 ~ 680370 (+)
G324116 smarcc1 non-coding upstream 14088 444777 ~ 446125 (+)
G324083 NA non-coding upstream 22403 365488 ~ 437810 (+)
G324089 NA non-coding upstream 99148 359123 ~ 361065 (+)
G324064 NA non-coding upstream 104910 326531 ~ 355303 (+)
G324139 NA non-coding downstream 77245 543868 ~ 548283 (+)
G324140 LOC106578455,LOC103388722 non-coding downstream 86100 552723 ~ 557118 (+)
G324142 dyrk1b,LOC102785375 non-coding downstream 89174 555797 ~ 556519 (+)
G324151 NA non-coding downstream 106383 573006 ~ 575138 (+)
G324125 NA non-coding downstream 118556 585179 ~ 588909 (+)
G324085 NA other upstream 17926 438391 ~ 442287 (+)
G324067 NA other upstream 48104 354781 ~ 412109 (+)
tbx20 tbx20,LOC107600539,LOC107719124,LOC107592953,LOC107666841 other upstream 132274 240370 ~ 327939 (+)
G324068 NA other upstream 167625 241197 ~ 292588 (+)
cmc1 cmc1 other upstream 266368 182467 ~ 193845 (+)
G324143 NA other downstream 90792 557415 ~ 558139 (+)
G324123 NA other downstream 100579 567202 ~ 635045 (+)
G324161 fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489 other downstream 140989 607612 ~ 610009 (+)
G324206 NA other downstream 279050 745673 ~ 748475 (+)
psmc4 psmc4,LOC107719110 other downstream 307666 774289 ~ 806528 (+)

Expression


Co-expression Network