gramd1a (gramd1a,LOC108256231)


Basic Information

Item Value
gene id gramd1a
gene name gramd1a,LOC108256231
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 719389 ~ 745520 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034297823.1
ACTGGGCTAGAGGATGCTCATGTGTTCATGTGATAAAGTGGATTTTAATCCCATCACACAACGCAAAGTTTATGAAGCCGAACAGGATCATGGGAAACATTCACCAAACGGGAGGACTTCACTGATCATAAaaccgtcatcatcatcatcatcgtcatcatcaacgtcgtcgtcgtcatcatcatcatggagGACGTTTCAGAGACACGGACTGAAGATCTGCAGCAGAAACGCGTCTGATTTCTGAATTATAAATGATTTGTAAACGGTCAAATGTTGCCATTGTGTGAAGACCGCGCTCTGTCGCAGCGAGCCCGAGGAAACCACCGATTTTGCAAGCGATGCCACAATGACACCTCGCAATCGAGTGGGTTTTGAAACAGACTTCGAAACGCGGATGAGGACTTCGTTTTAAAAGCCAGAGTCACGCAGCGACGCCGACTCTCTCTGAAGTAAACCAGGATTTATTCCCACTCGCTAAATGGCTAAACCCATTCCCATCCCGATGCTGAACGTCCTCCCGCCGTCGTCGGATAACGACTCCTGGTCTCCGTCGTCCAGCCCGCTTCCTCGGAGACGCCGGATTTGGGACGTGACCGGCAAGAAACGCAGAACCCGAGCTCAGGAGGAGGGAGATCCGAGAGACGGCGACGGGGCCGAGGACAAGAAGAGCGAGAAGACGAAGCGGAGGAGCCGCTCGCCTGTCTGTGTAGAAGGGGAGGGGCTTGTTGAAGAGGAGGCGAGTAACTCCGCCTCCTTTCTCCTGCCTCCGTCTCGGTGCTCCTCTCCGAGCATCAGGCGGTCTCGGTTGTCGCTACGCCGTTTGCTCGCGAAGGACTCGGACTGCGAAAGCTGCAGcacgGCCAGTAACTCTCCCCGCAGCACTCCGGGCAGTTCTCCGTCTCTACGGCGACGGGTGCTGGGTGGGCGGGCCAGCGAGGGCGAGGGGCAGAATGAGCGCACCGGAGGGGGCGGAGCTGaaacctcctcctcttcctccttacTCCCTACACCCTCCTCCTCTACCTCCAACTACCCAATCAGCTCGCGGCACTTCACCCGCAATGCCAAGAAAATGCAAAGCTGGTACAATgttctcAGCCCCACCTATAAACAGAGGAACGAAGAGTTCCGTAAACTCTTTAAGAAACTTCCAGAAACAGAGCGTCTGATtgtagattacTCATGTGCTCTGCAGAAGGACATCCTGCTGCAGGGACGTCTCTATCTGTCTGAGAACTGGATCTGCTTCTACAGCAACATCTTCCGCTGGGAGACCACTaTCACACTCCTGCTGAAGGAAGTGACGAATCTGTCTAAAGAGAAAACGGCTAAACTCATTCCAAACGCCATCCAGATCAACACTGAGCAGgagaaacacttcttcaccTCTTTCgagctatatatatatcacagcTTATACTTGATGATTTTCAGACTGTGGCAGAATGCACTAATGgacaagacgcTGTCTCCTAAAGAGCTTTGGCACATCGTACACCAGTGTTATGGCACGGAGCTCGGGCTGACGAGCGAGGACGATGATTACGTCTCTCCCACCGGCGAGCACGTCAACGGCCTGCTGCCGGGTGATGATTCCTCCTCCGATGTGATGGATCCATCCTCAGCCTCGGCAGCGCCCGGATCttctcctccatcctcttcttcctcttccgcTCAGCCCGTGGAGGTTCAGCCGTCCAAACACAGCGCAGAGCAGGAGCCGAGCCCAAATACGCCCTCCACCACACACTCCACCACACACTccaccacacactccacacaccccGCCTCCACCACTGCTGCTATGAATTCGGAGGAAGGTGGGCAGGACGGTCAATCAGAACCAACCAATCAGGTGGCACCGATGGCTCACGTGTCATCGCTGGAGATGACCAACGATGAGGACCTTCCCACTGACCCGAGCAACTCGTCCGACACGCAGGAAGAGAgtgaggtGGAGTCGTTCTGTGGTGATCTGCGAGGTCGGCTCCACATTAACACGGTGGTGAGGATGAGTGTGGACAAACTGCACGAGCTGCTcttctctgacacacacttcctgcagCACCTCTTCACCCAGCGCAACTTCACCGatctgTCAGTACAGGAGTGGCAGAAAGACAGCAGCAGTGGGATCAGCACTCGAGTTTTGAGTTACACCATCGCAATTAACAACCCCCTCGGCCCTAAAACAGCCCCCGTGGTGgaaacacagactcTTCATAAGAGCAGTTCTCGAGGTGTGTGTTACGTGGTGGACTCGGAGGTGATCACGTCAGGAATCCCGTACCAGGATTACTTCTACACCGTACACAGATACTGTCTCACCTCCGTCAGCACGCAGAAGAGCCGCCTCagggtctCGTCAGATATCTGCTACAGGAAGCAGCCGTGGAGTCTGGTGAAGGCTCTGATAGAGAAAAACACCTGGAGTGGCATAGAGGAGTACTACAGACACATggagGCGGAGGTGTGTAAGTTGGAGACTCTGCTCCAGTCCGAGGTGTcggtggtgtgtgtgggaggatcAGAGGAGGTTAAAGCTCCTCCCACACTGCGCAGGCGCAAACGCACCGGCTCGAAACGTGCAGAGGGGGCAGGGCATGTGGGCGGAGTCACCGAGCAAGGGGGCGTGGCCCAGAGGGAGCGCAGAGACACAGgcgcACAGTACCTGAAAGTGGGTGAGAGGTGGCGTGGCTCTGcaaacaacaacagcatcaCTCTCCTGCTCATCATCAGCTTCATGATCTGTATCAGtctggTGGTTTTGGTAGCTCTGAACATGATGCTGTTCTATAAGCTGTGGTCTCTGGAGCGAGCCGCTCACACACTCGAGACGTGGCACTCATACTCGCTGTCAGACagtcctcTCCCCCAGTCGGCGTCTGAGTGGATGAAGGTTCTGCAGCTACAGCGTCAGTTCCATCAGGCTCAACTGAATAAGTGGCAACAGATCCTACACTCCTCAGTCACACTGCTCgactagatGAAACAGTCTCTGGAGAATCTCCACAGAGGAATAATCAGATCTGAGGAACAGGAAACTGTCGCTCCTCCTCCATCTGAACCTCCAACTCCACCCCCATCCTGGCACCCTTCTGAGCAGTGA

Function

symbol description
gramd1a Predicted to act upstream of or within lipid transport. Predicted to be located in endoplasmic reticulum membrane and plasma membrane. Predicted to be integral component of membrane. Orthologous to human GRAMD1A (GRAM domain containing 1A).

NR:

description
PREDICTED: GRAM domain-containing protein 1A-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034297823.1 True 3112 mRNA 0.55 21 719389 745520

Neighbor

gene id symbol gene type direction distance location
LOC113524791 LOC108256242 coding upstream 39019 674868 ~ 680370 (+)
pycard NA coding upstream 55413 658481 ~ 663976 (+)
etsrp LOC108256243 coding upstream 61997 650918 ~ 657392 (+)
zgc:162160 LOC108256255,LOC108437392,LOC107719116,LOC107666762,LOC107737835,LOC107592933 coding upstream 195232 505314 ~ 524157 (+)
ppox ppox coding upstream 236091 469956 ~ 483298 (+)
si:dkey-199f5.8 LOC108256292,LOC106605235,LOC108437381,LOC106582539,LOC102233588 coding downstream 61121 806641 ~ 816145 (+)
cep85 cep85 coding downstream 86325 831845 ~ 843562 (+)
atp2c1 atp2c1,LOC107666823,LOC107592020,LOC107668304,LOC107600500 coding downstream 112590 858110 ~ 893602 (+)
rpp25l LOC108256289 coding downstream 158943 904463 ~ 906704 (+)
LOC117595801 NA coding downstream 163108 908628 ~ 914250 (+)
G324197 NA non-coding upstream 5588 713395 ~ 713801 (+)
G324160 NA non-coding upstream 111846 607045 ~ 607543 (+)
G324156 alkbh8 non-coding upstream 120219 598410 ~ 599170 (+)
G324125 NA non-coding upstream 130480 585179 ~ 588909 (+)
G324151 NA non-coding upstream 144251 573006 ~ 575138 (+)
G324216 NA non-coding downstream 3931 749451 ~ 753443 (+)
G324284 scap,LOC102785784,LOC107600505 non-coding downstream 565391 1310911 ~ 1315115 (+)
G324294 scap,LOC107666822,LOC107600505,LOC107713836 non-coding downstream 584127 1329647 ~ 1330871 (+)
G324303 NA non-coding downstream 594008 1339528 ~ 1368639 (+)
G324305 NA non-coding downstream 595605 1341125 ~ 1342780 (+)
G324123 NA other upstream 84344 567202 ~ 635045 (+)
G324161 fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489 other upstream 109380 607612 ~ 610009 (+)
G324143 NA other upstream 161250 557415 ~ 558139 (+)
G324120 NA other upstream 252764 454910 ~ 466625 (+)
G324085 NA other upstream 277102 438391 ~ 442287 (+)
G324206 NA other downstream 153 745673 ~ 748475 (+)
psmc4 psmc4,LOC107719110 other downstream 28769 774289 ~ 806528 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other downstream 211064 956584 ~ 1010223 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other downstream 372748 1118268 ~ 1163614 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other downstream 1154106 1899626 ~ 1919710 (+)

Expression


Co-expression Network