cep85 (cep85)


Basic Information

Item Value
gene id cep85
gene name cep85
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 831845 ~ 843562 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034297824.1
ATGGGCCTGCTGACAGCTGCTCTGCGGAACTGCGCGGAGACTTCCGaATCGTGCAGCTCCAGCAGCAGTCCGTCCTTCCAGCCAATCCGGAGTCAGATTCCGATCCCCACCGCCCATGTCATGCCCTCCACGGCCCACAATCCTTTGCAGCGACCCGCAGACTCCcgctccagctcctccagctcCAGATCGTCCCTCTGTAAATCCGCATCGTCCCCGAACCTGGAGGCGCAGGACGGAGGCGGAGTCAAACAGGACTGTCTGAGTCGCTACCGCAGCCTCGTCAACGGGTTGGACCACTCGCTGTTCCCCGGAGCGGACCACAACCACACGCGGCTGGACGAGGGTCAGGGCTTCGAGACGCCCGCCGTGGAGCCGACGCTGAACCAGTCCGCGCTGCTCGGAGGATTCGGACCCGACGTCAGGATGAAGCTCCACATGACCGGGCTCGGGGACGGCGCCGAATATCGGACCGACGCCTTCCATAACGCTTTGGATCAGACCTATAAGGTGTTGCCCGAAGCTAGAACGGGAATTCCGTCCTCCTCGGAGTCGTACGCCAAAACGAAGGCGCATCCGGGCGAGAACATGGCCGACTGGCAGCAGAAATTCGAGAACCTGCGAATGCAGGTGGAGCAAATGCAGGTGAGAGAGGGAGCTCTCTCAGTACTTTCGCCTCTGTATCCGTCTCCTCTGCAGTCCGAGAGCAGTAAATGGGAGGCGGTGATGAAGGCCAACGAGAGTCTGCTGAAGGAGAAGGAACTCATCATtgacagGCAGAAGCAGCAGCTGTATCAGCTCGAGCAGCGCCTCAGAGAGAGCGAGTTACAGATCCATGGAGCTCTGATGGGGCGAGGAGCTCCGTTCACTGACGTCTGTCTGCTCAGACTGCAGgaggCGCAGCGTGAAAACGCTTTCCTGCGTGCCCAGTTTGCCGAGCGCAGCGACTCGTTCGCTCAGGAGAAGCTGGAGGCGGACCGGCGTCTGGGAGCCGTGGAGGCGGAGACTCAGCGTCTGAGCGAGAGTCTGAAGGAAAGCGCGGAGAAACACGCAGAGGAACTGAAAAAGCAGGAGGAGAGGatcCGTAACCGAGACAAGCACATCAACAGCCTGAAGAAGAAATGCCAGAAGGAGGCGGAACAGAACCGAGAGAAACAGCAGCGCATCGAGACGCTGGAGCGTTACCTGGCCGACCTTCCCACCATGGAGGACTACCAGAGCCAGAGGAAACAGTTGGAGGCAGCAGAACAGAAGGTGGATGAGCTCCAGGGATTGGTGGAGGAACTGGAGGCTCAGCTGAAGGAGGTGAGAGCCGCCAATCGCGCTAAAGACGGACAACTGGAGGAACAAAAACGCAGAGAGAGGGAGCTGCTCGCTACGGTTActagTCTGCAGGCCCGAGTGCAGGAGGGGTTGGACGATGGAGCTCGATTGCCGTCTCTGGACGTCGAGAAGCTCCGAGAGGAAAACGTGACTTTGAAAGAAGAGCAGCAGAAACTCAAAAAGGTTATTGAGAAGCAGCTGAGGATGATGGAGCAGCTCGGCTCGCAGATCAGGaGCGTGCAGCAGCAGCTAGCGGAGGAGGAGAGCGGCGGTCAGGCTCTGAGAGACGAGCTGAACTCGAAAGATCAGCAGCTGCTGCAGTTACGCTCGGCTGTGAAGGAGctgtcTGCGCAGAACCAGGAGCTGATGgagcagagtgtgtgtctgcgtgagCGTCTGCAGGCCGAGTCGAGTGTGTGTGACGTGCGACTCACTCAGCAGCTGCTCAATGAAATGGCGTTGTGTCTGACTGACCTGCGCTCCCTCTGCAGCGTcctcacacacaccgcacacggCCGAGACCCCAACCTGTCCCTGCTGCTGGGGATCAGcgccCCTGCTGTATCAGAGCCGTGTGATGATTGGCTGAATCCCGCAGTTCTACAGAAGAAACTCCAGGAGGCGCTGCAGCTGAGACGAGACGTGGAGGAGCTGCGGAACACCGTCTCAGACCGCTACGCTCAGGACATGGGGGAGAACTGCACCACCCAGTAACGCAGAACCCACAGAACCCGAACTGCACCACACAGTAACGCAGAACCCACAGAACCCACAGAACCCGAACTGCACCACACAGTAACGCAGAACCCACAGAACCCGAACTGCACCACCCAGTAACCCAGAACCCACAGAACCCACAGAACCCGAACTGCACCACACAGTAACGCAGAACCCACAGAACCCGAACTGCACCACACAGTAACGCAGAACCCACAGAACCCGAACTGCACCACCCAGTAACGCAGAACCCACAGAACCCGAACTGCACCACACAGTAACCCAGAACCCACA

Function

symbol description
cep85 Predicted to be active in centrosome. Orthologous to human CEP85 (centrosomal protein 85).

NR:

description
PREDICTED: centrosomal protein of 85 kDa isoform X1

GO: NA

KEGG:

id description
K16766 CEP85; centrosomal protein CEP85

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034297824.1 True 2334 mRNA 0.59 12 831845 843562

Neighbor

gene id symbol gene type direction distance location
si:dkey-199f5.8 LOC108256292,LOC106605235,LOC108437381,LOC106582539,LOC102233588 coding upstream 15700 806641 ~ 816145 (+)
gramd1a gramd1a,LOC108256231 coding upstream 86325 719389 ~ 745520 (+)
LOC113524791 LOC108256242 coding upstream 151475 674868 ~ 680370 (+)
pycard NA coding upstream 167869 658481 ~ 663976 (+)
etsrp LOC108256243 coding upstream 174453 650918 ~ 657392 (+)
atp2c1 atp2c1,LOC107666823,LOC107592020,LOC107668304,LOC107600500 coding downstream 14548 858110 ~ 893602 (+)
rpp25l LOC108256289 coding downstream 60901 904463 ~ 906704 (+)
LOC117595801 NA coding downstream 65066 908628 ~ 914250 (+)
cmtm7 cmtm7,cklf7,LOC106606093 coding downstream 79603 923165 ~ 930865 (+)
cmtm6 NA coding downstream 90592 934154 ~ 955393 (+)
G324216 NA non-coding upstream 78402 749451 ~ 753443 (+)
G324197 NA non-coding upstream 118044 713395 ~ 713801 (+)
G324160 NA non-coding upstream 224302 607045 ~ 607543 (+)
G324156 alkbh8 non-coding upstream 232675 598410 ~ 599170 (+)
G324125 NA non-coding upstream 242936 585179 ~ 588909 (+)
G324284 scap,LOC102785784,LOC107600505 non-coding downstream 467349 1310911 ~ 1315115 (+)
G324294 scap,LOC107666822,LOC107600505,LOC107713836 non-coding downstream 486085 1329647 ~ 1330871 (+)
G324303 NA non-coding downstream 495966 1339528 ~ 1368639 (+)
G324305 NA non-coding downstream 497563 1341125 ~ 1342780 (+)
G324328 NA non-coding downstream 534984 1378546 ~ 1378940 (+)
psmc4 psmc4,LOC107719110 other upstream 25317 774289 ~ 806528 (+)
G324206 NA other upstream 83370 745673 ~ 748475 (+)
G324123 NA other upstream 196800 567202 ~ 635045 (+)
G324161 fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489 other upstream 221836 607612 ~ 610009 (+)
G324143 NA other upstream 273706 557415 ~ 558139 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other downstream 113022 956584 ~ 1010223 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other downstream 274706 1118268 ~ 1163614 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other downstream 1056064 1899626 ~ 1919710 (+)
bola1 bola1,LOC107592543 other downstream 1298630 2142192 ~ 2144525 (+)
LOC113533074 LOC108256184 other downstream 1361284 2204846 ~ 2215410 (+)

Expression


Co-expression Network