LOC113532544


Basic Information

Item Value
gene id LOC113532544
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1475543 ~ 1481875 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034297825.1
ctgagGAACGAGGAAATAGAGTGAGGACTGACGAAACCACGAAAAAACACGGCGGTTAAACAGAACTCACACTCTCTCAGACCAGGCGCTGGACAACAGCCAACCATGAGGTACACGTTCAAACCGGATGACTGCATGGTCATCACTATCCCTCTCTGCAGCATCAGGGACGCCAGAGAGGGACAGCTCATGCCCGACAAATTCACCTGCAGGTTCAAGGACACCTACAAAGTGTTTCAGCGGGGTCACCCCAAAGCACTCGGGGCGGCTCAGATCGTCACTGCAGTTTTTATCCTGTGTTTGGGAGGAATCATCATCGGCTGGCTTGACAGAGTTCCTGCTGCTATCTGCATTGTTCCCAGCATCCTGTATATACTGTGTGGCAGTCTGGCGATTACCGCTGGACACACTCCATTAATGCCCATGATGAAGGCATCGTTCATCTTCAACATCATTGGCCTTTGCTTAGCAGTTACCTTGTGTTACCTCACTATTACCTTGTGTGTGGTCTATACTTTATCTTATCagCTTCCCTCCCTGTTTTATCCATCCTCTGTGCAGACAGATAATGTGCGTGTAGGACTGGGTGTGGTGATCGCAGTATTGTACGGGTTTGAGTTTCTCCTCTCTGCGATTCTGATCTACTGGGAGAGTAAAGCCGTATGCCGAGCTCATTTCAACAGCCTGCCCATGATCACACTAAAGCAGGACATGTGAGCTGTGATGGACTGAAACTGGAATAAGGCAAATGTTTAGCGACCTTTGACCTCAGATAAGTCGCGTCTTTGTTCCGTCTCTTGAACAACTCATTGTTTATTCGCATCCGAGTTTCATTGAATAAGTGTAACGAGGCTTTTGCACTTGCTTTTATGTGTTTCTTTGAGGAGCTGCTTGTTAATAagctactgtatatatgaaTTCAAGTATGAACTATTATAAAGAAAGaccattttaattataaacataATAGATGACTCCTTTACACCTTATGTAATTTACAGTTAGTTTTTTCTTAtcttttgttattattaaaatgatctttTTATTCTTGTTGTTTTGTATGGCACTGAGTATTAAACAGTATGTTGACTACATGACagacgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggacggAGAGGTGTGAAAATGTCTGTGCAGACCAGCTCAACATTTCCGGCATGTTTTTTCAGTGAGATGGTGTCCAgataaagacacagagagaacacagaagaaagtttgaattattttaatctCTTAAAGATTTAACATAGAAGCAATGTGTAGCAATAAACATCAAAAAATTTGTGCTTA

Function

GO:

id name namespace
GO:0002521 leukocyte differentiation biological_process

KEGG:

id description
ko04611 Platelet activation
ko04662 B cell receptor signaling pathway
ko04664 Fc epsilon RI signaling pathway
ko04666 Fc gamma R-mediated phagocytosis

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034297825.1 True 1334 mRNA 0.43 7 1475543 1481875

Neighbor

gene id symbol gene type direction distance location
ptdss1a LOC108256259,LOC107677659,LOC103360057 coding downstream 2438 1458423 ~ 1473105 (-)
LOC113532865 nhlrc1 coding downstream 20990 1453025 ~ 1454553 (-)
grinab LOC108256260,LOC103028312,LOC108412215,LOC106588904 coding downstream 74577 1392716 ~ 1400966 (-)
LOC113532867 NA coding downstream 84284 1387757 ~ 1391259 (-)
smpd5 LOC108256263 coding downstream 88494 1369754 ~ 1387049 (-)
zgc:158766 LOC108256307,LOC107601962 coding upstream 4503 1486378 ~ 1529401 (-)
LOC117595786 LOC108256309,LOC108256308,LOC108261853 coding upstream 95923 1577798 ~ 1590187 (-)
gapdhs g3pt,gapdhs,LOC107577408,LOC107709572,LOC107686531 coding upstream 111595 1593470 ~ 1606689 (-)
LOC113532853 atp4a coding upstream 126126 1608001 ~ 1626560 (-)
LOC113532527 NA coding upstream 149568 1631443 ~ 1638619 (-)
G324726 NA non-coding downstream 289466 1119771 ~ 1186077 (-)
G324731 NA non-coding downstream 306212 1144586 ~ 1169331 (-)
G324729 LOC108256269,LOC108256268,LOC108256164,LOC108256276 non-coding downstream 347926 1126844 ~ 1127617 (-)
G324649 NA non-coding downstream 520151 880609 ~ 955392 (-)
G324650 NA non-coding downstream 593257 881639 ~ 882286 (-)
LOC117595768 NA non-coding upstream 187227 1669102 ~ 1674907 (-)
G324970 NA non-coding upstream 242135 1724010 ~ 1724764 (-)
G324980 NA non-coding upstream 265782 1747657 ~ 1748008 (-)
G325003 NA non-coding upstream 415836 1897711 ~ 1898181 (-)
G325056 NA non-coding upstream 425068 1906943 ~ 1948211 (-)
kif13a kif13a other downstream 24543 1403264 ~ 1451000 (-)
G324748 NA other downstream 104514 1370476 ~ 1371029 (-)
scap scap,LOC107600505,LOC107717374,LOC107668298,LOC107713836 other downstream 133472 1294865 ~ 1342071 (-)
nek11 LOC108256279 other downstream 373426 1043313 ~ 1102117 (-)
G324579 NA other downstream 747909 726627 ~ 727634 (-)
LOC113533106 LOC108256308,LOC108256309,LOC108261853 other upstream 75141 1557016 ~ 1568506 (-)
G325145 mtmr11 other upstream 606384 2088259 ~ 2097435 (-)
LOC113532533 LOC108256344 other upstream 1748146 3230021 ~ 3251447 (-)
LOC113532799 rftn1 other upstream 1837669 3319544 ~ 3404418 (-)
znf385d znf385d other upstream 2238814 3720689 ~ 3796368 (-)

Expression


Co-expression Network