LOC113532859 (LOC108256203)


Basic Information

Item Value
gene id LOC113532859
gene name LOC108256203
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2542942 ~ 2549897 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034297832.1
atgtTCTCCGCCTGCTTCCTGGTGTGGATGACTATTCCCGCTATATACAGGCTGGAGTGGAATGTCATGGTGTGtatgcatgatgatgatgatgatgatgatgatgacgagtGGTTCTGTGATCCCTTTTCACCCTCACCTCCTCAGACTATCCAGGTTGAAGGACACACCGACCTTCAGCAGAGAGAGAGCCGAGGTGATGAATTGGATATTCAGTCcttaaatgtagaaaatgtcGCTTCTCGTCCTGCTTTTCTTGAGAAGCTCAGAAGTGAGCAGGAGCTTGAGGACTGGTTCATGGACTACACGGGCCTGCAGCCATCAAACCAGCAGGCTAAAAGACGTCCGGCTGTTAAAACCGGAAAACTGAGGAAGATGTTCGGCTGGGGAGACTTCCATTGCAGCGTCAAGTCTGCGTCCCTGGAACTTCTCATCAAAGGGAAGATCGTGGACCACGGAAACGGAACCTTCAGCATCCACTTCCTGTGTAACAGCACCGGCATCGGGAACATCACCATCGGATTAGCGCCATCCACCAAGATGGTGGAGTTCGGATTGACGCAGCAAGAGGTCAAGGAATCCGTGGAGTCGAAGCTGTTCAACTGCAGGGTGGAGTCGGAGAAGGTGGAGCAGAGCAAGAGGGGCGTGCGGTGTAGCTACGACCCGTCAAAGAGCTGCGAGCATCAGCAGACCCACAGTCACGTCTCGTGGCTGTGCTCCAAGCCGTTCAAGGTCATCTGCGTGTACGTCTCCTTCCGCAGCGTGGACTACAAACTGCTGCAGAAAGTCTGTCCGGATTATAACCACCACAGCGATGCGCCGTACTTCCGTTCTGGATGATCACTAGATAACTGACATGTGATAGGACAAAACAGAGTGGGTtctgcacacacaaatacacacctgTAGCCAGTTACTTAAAGGAAAACACCACCCTGAGAcccattaaatatgtttatattgaaatatctgtgatTCTGGTgatttagtgattctggtgctaatttcttGGTTGGTGCTGCACTGCAGTGCACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034297832.1 True 1036 mRNA 0.50 3 2542942 2549897

Neighbor

gene id symbol gene type direction distance location
LOC113533066 thsd7a,LOC108256167 coding upstream 5882 2426744 ~ 2537060 (+)
rab11al rab25,rab11al,rb11a,LOC107688222,LOC106580659,LOC107756900,LOC107671462 coding upstream 170502 2364753 ~ 2372440 (+)
rab25b rab25b,LOC108256192,LOC108433873,LOC107756889,LOC107592474,LOC107688282,LOC107671436 coding upstream 179943 2358315 ~ 2362999 (+)
lamtor2 lamtor2 coding upstream 186726 2354104 ~ 2356216 (+)
ubqln4 ubqln4,LOC107726678,LOC107756885,LOC106580647 coding upstream 193423 2339453 ~ 2349519 (+)
ica1 ica1,LOC107592479 coding downstream 4223 2554120 ~ 2563081 (+)
col28a1b LOC108256731 coding downstream 33322 2583219 ~ 2607036 (+)
slc25a32b slc25a32,LOC107688281,LOC107756894,LOC107726671 coding downstream 96884 2646781 ~ 2656914 (+)
pbx2 LOC108256343,LOC108439298,LOC103040777,LOC107711540 coding downstream 690545 3240442 ~ 3251360 (+)
tap1 tap1 coding downstream 715386 3265283 ~ 3278447 (+)
G325271 NA non-coding upstream 142258 2400470 ~ 2400684 (+)
G325268 NA non-coding upstream 146055 2396673 ~ 2396887 (+)
G325247 NA non-coding upstream 207836 2334879 ~ 2335106 (+)
G325089 NA non-coding upstream 522554 2020184 ~ 2020388 (+)
LOC117595767 NA non-coding upstream 541938 2000137 ~ 2001004 (+)
G325462 NA non-coding downstream 94144 2644041 ~ 2647583 (+)
G325697 NA non-coding downstream 521952 3071849 ~ 3072073 (+)
G325730 NA non-coding downstream 589415 3139312 ~ 3208962 (+)
G325754 LOC108256342 non-coding downstream 709032 3258929 ~ 3260181 (+)
G325815 NA non-coding downstream 770020 3319917 ~ 3322330 (+)
LOC113533074 LOC108256184 other upstream 327532 2204846 ~ 2215410 (+)
bola1 bola1,LOC107592543 other upstream 398417 2142192 ~ 2144525 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other upstream 623232 1899626 ~ 1919710 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other upstream 1379328 1118268 ~ 1163614 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other upstream 1532719 956584 ~ 1010223 (+)
G325435 NA other downstream 15803 2565700 ~ 2569739 (+)
hamp NA other downstream 1461483 4011380 ~ 4013538 (+)
hmgn2 NA other downstream 1841623 4391520 ~ 4394784 (+)
LOC113532991 LOC108256125 other downstream 1848762 4398659 ~ 4434251 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other downstream 2371083 4920980 ~ 4923681 (+)

Expression


Co-expression Network