cep72 (cep72)


Basic Information

Item Value
gene id cep72
gene name cep72
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5046966 ~ 5056667 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034297834.1
ATATAAGCTTTGGAAGCTGTTCTGTTTGAGtggagtgtacagatgaggaggcaAGAGAGCcagacagactaaaggactaaagcgctgctgcatcattctttctagATCCTCACGCAAGCGCGCGCAGGGAGTGAAGTAGGCGGTTGGGAgatgcgcatgcgcactgcgCCTCAGTTTGAAACTATGGCGGCGACGCAGTGTTTATCCATAACAGAGCAGTGGATACGGGAAAGGCTAAACCTTCAACACCAGTGTTTAGCGGATGTGCGATCACTGCGCCTGCCAGGAACAtatgaaacaggaaaaataggCCATCTGGGAATTTCTCTCAAGAACTTTGTTCGCTTGAAAAGTCTGGACCTTTCTCATAACGCCCTCGTTTCTGTAGAGGGCATTCTGCATTTAAAGTTGCTTGAGAACTTGAATCTGTACTACAACAGAATCTCGTCTCTTCAGGACGTCCTGTCTTTAGGCAGCCTTCAAAATCTAAAGGAGCTGGATCTCAGACTGAACCCTGTTGTGAAAAAAGATCCCTTCTACCGCCTGCACTTAGTCCAGGCAATCTCCAAGCTTCGTAAACTTGATGACTGTGTtgtgagggacagagagagaaaagcggCTCTCATGCACTTCTCTGCAGAGTCGGGACTCGAGTCCTGTCAGAAATCTCCACTTTCTACAATGGAGATAAAGAACAGgaGCAGTAATCCTAGGATTGCCTCAGTGAACAAGATGATGATGTCGAAGCTCATGCTCCGTGAGGGTAACGAGGAAACAGTGCTAAATCACAACTTTGATGGGAACAGGAACATATCGACACAAGAAGCTCACATAGAACAGTACAGCAAACCAGAGTCTACTCATTTACAAGAAAATCCCTCTGAAATTCTAAATCTACTCAATGACTATGATTCAGCATTACTATCTTCACAGAAACAGGAATTTCAATCTAAACTTAGGAAATGCCATAATGGTGTGGTGCCTCAGAAGATTGGCTCAACACTCGCCACACTATCAGACCTGCGGCCCTCGAAAGATATTCCCAGAGTCACCTTCGTTGAACCATCTGTAAAAAGATGCACTTCTGGTAACCTCACACCCATCAGAACACAGGCCGAAAGTTATTTCACACCATATCCCAGCAACAAAAATGCTTCTTCACAAGCTCTTAAAGGAGATGATCAGCCagtgtgtttgttaaaaaattACTCTGAGAGGAAAATGCATCCACCTAGACTAACATACCGAAGCTCTGATGATGGAGAACTAGAAGGATGTTCACATGCACCTGAGAGAGCCAGAAATCCCTGTAAGGGAGCATACAGGAAACCGATGGAGTTGCTTCTAAGTTTGGTGGATGAGTACTGGTCTGGCGAGATGAAGGATCACAACTCTAAGCATTTTTTCATGCACGCTGTGCGGATCCTCTGTATGATGGAACAGGAGGTTGCTAACGGGGAAAGCGAGATGACTGCTCTGAGAGAGAAGATCCAAACACTGAGCGACCAGATAGGCATACGGAAGAGAGAACATCAGTCAGAGCTGCGGAGGCTTTCCGAGCAGCTTAAGCAGGCACACGGCAACATCGAGCATCTTGATCAGGAGTTGAGGTGTGTTTTGGAGGAGAATGTGTCTTTGCAGAAACAGTTGATCAGATTAGAGCAGCAGCTCCTCTCTGATAAGCTGAGGGAAATGCCAAACACACAACGCTGAGGTGATTTCATAAACCTTGATAAGTTTAGCCAGCTACTCAGAACATGCTTATCTTGAACAGATCAGAACGAgaagctttttcattttttttttttttagacccATATCCTTTCtaaaatttctgaaaatgtgtactagtctttatttctgtagaatTGTCTCTTTGGTGGCTTAGTCATATGAGAATAGCAAGAAAAGTtgtgattcatttgttttgtgaaGTTCAAGTGAATCCTGTCTTTCTCACGTGCACACACTTTTTGAGCAGATCAGATTAAATGATGTCATTCACACAAGGCCAGAATTAGACCCTATATCAGTTGTTTCTCTCAGACAAAGCTTATTTTATCCAAAGGCTGACAGAAACGAAAGCGGCACTGCATGCAATATACAGAAGCAAACAAATGATCTCTTATTGTAAACAGTTTGTGATAATTAATTCATTAGGAACAAACATGCTAAATCTACCAGGGAGTGGGGAGAAAAAACAATGAACTTATAAAAGCCATATTCAgcctttaaacattacaaagtttaaaaatgttacacCATTCTTTTCATACTAAACTCATTTTCAGGTAAGGAATCAAATTGTTTAATGCACTGCTCATTTAAGCATTGCTTTTAAATTTGATGAGGTGCACAAATGcaatgaggtaaaaaaaaaaatattaaggcCAAAAACAAGGccatccttttctttctttttattcagaACAATGCTACAACATAGGGACAAGTTAAAGGTCTGTTGAACGTTACCTTAAACACATAACATGCAGCAGGGCACTGTAACACATAGAAAAATAGTTATATGAAAAATAAGACAACATTTTGTTCCTCGAAAACGGAGGGTTTACAGTATTTGGCGTCAAAGCACACAAAACAGCAACCATTTgttaaaatacaacaacaatattTCAAATTTGCTCTTTTGATATAAATATGAGTCACTTTCCAAGCAGGAACTAACAGGAACAGTGTGACACTATACTGGAAAAATAGATGTTCTATAGAAGAATATGTCTATACATGCTGTCCTCTTCCTTCCAAGAAACCTGCTGCATATTTTTGCTCTTTGTTGCTCAACTGAAACAGTGTGTTAATTATCTAACCTAATATTTTCAAAGAAGATGACATTAAATACCATATATTACTGTATCAGCAGCGCAGAAGTGTAATTACTTGCACTGGAAAGCTGCTAGTATATTGATTCTTAATAATACAGAGATTTACCTGGTCAGAAATTTAAAGGTATACAtgcttttattcttttctgGAATAACAATTTCTGGTTTCTATATCAAGGTTGTGTACCACTCCTGTATGTATTGATGGAACATTAAATGGGAATCTTATGACCTTGGGACCATTTAAGGTTATTTCATGTTATTTGGCTAAAATGCAATCATTGTAAACATCGTTTATTAGACTGGAAAAATTGCACATACTAAAAGGTGCCGTGATATAAAATGTCTCAACTCTGAAAccacaaaaaaggtttttaagcgatttaatttagaaaacattgtaattattattacgAGTATTAACCAGACTTATTCAACCCAATACTTTTAACTTCCTGTCACGCAGGAGGCTGTATGAGTAGGCACCATGTTTGGGCCGCATCTGAAGTCCCAGGATAAAGTCTGAAGGCAGTATAAGAGACCTGTGACAGGCATCTCCATGTAAAAGAAGGAAGAGCGTAATATAAATTTCATCAGGCGATCACAAACATCACATTAAATGACCTCTAATATTTGCACTTAGGAAGGTTTTGaaagtacactacatgcacctttttAGGTACATACCGATGCGTACATACTAAATGCCACGTTCTACAGTAATTGGTGAGCTAACAGTAGCAAAGTAGATAATTACGGTTAAGGTAAACTTTTGTGGTGATGCCATATGCTAAAGTTTGTGAGTAGCTGAGTAAATTTATCTCACGCTCAAAAACAGTGATAAAAGATCAGTTctaatgatataaaaatgtcATATCGGCATGTGTCTGATCTGATCAGTAAGTGATAACGGTTGTGCATAGTAGTATAGATAGTAAATTGTGCTAAGACAGTGTTATAATAAACCAATCACATGATCCCCTCCTGACTTCCTGCTGTCTAATCTCAGTGCGTTTTTATGTGACAGGTGTCAACAGAGAAACTGTGTATCAGCCAGTGTATCATATTATGCCATCAAGCGTTAgcataaaaacacaattataAACACTATTAATAATTTTGACCCTATATAATGGACAGAAACATTAaccatatattatatatatataaaatgtagatCACCATTTGTGATGTAACAACCGAGCAGAGCGTACGAGCCGTCAAATTTGGTGACTGTTTAAGGACTTATGCACAAATTCACAATCTAATATCAGTAGACATCAGCTCATGGATTCTGAATAGGTCACACTaggctcattt

Function

symbol description
cep72 Predicted to be involved in gamma-tubulin complex localization and spindle organization. Predicted to be located in centrosome. Orthologous to human CEP72 (centrosomal protein 72).

NR:

description
centrosomal protein of 72 kDa-like

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component

KEGG:

id description
K16532 CEP72; centrosomal protein CEP72

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034297834.1 True 4163 mRNA 0.39 14 5046966 5056667

Neighbor

gene id symbol gene type direction distance location
atp6v1c1a atp6v1c1,atp6v1c1a,LOC104937165,LOC102207943,LOC102305030,LOC100703061 coding upstream 27869 5008544 ~ 5019097 (+)
myom3 myom3 coding upstream 128497 4864569 ~ 4918469 (+)
ifnlr1 NA coding upstream 190814 4842459 ~ 4856152 (+)
LOC113532696 man1c1,LOC108426368,LOC105006133,LOC106582899,LOC106605146,LOC107601975,LOC107713850 coding upstream 276350 4556125 ~ 4770616 (+)
slc9a1a slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107564092,LOC107552533 coding upstream 501619 4501487 ~ 4545347 (+)
trip13 trip13,LOC107754445,LOC107677654,LOC107659068,LOC107729803,LOC107736543 coding downstream 40474 5097141 ~ 5105422 (+)
nkd2b nkd2 coding downstream 54406 5111073 ~ 5140807 (+)
tmem147 tmem147,LOC106605633,LOC107666831 coding downstream 88303 5144970 ~ 5150227 (+)
ncam3 NA coding downstream 133351 5190018 ~ 5203404 (+)
LOC113532508 LOC108256086 coding downstream 171910 5228577 ~ 5234049 (+)
G326462 LOC108256729,LOC108426375 non-coding upstream 17176 5019782 ~ 5029790 (+)
G326458 NA non-coding upstream 63286 4983473 ~ 4983680 (+)
G326440 NA non-coding upstream 122330 4924178 ~ 4924636 (+)
G326429 NA non-coding upstream 242907 4803837 ~ 4804059 (+)
LOC113532560 NA non-coding upstream 243455 4800572 ~ 4803511 (+)
G327071 NA non-coding downstream 484691 5541358 ~ 5541889 (+)
G327178 NA non-coding downstream 549203 5605870 ~ 5607099 (+)
G327385 zfpm2 non-coding downstream 776326 5832993 ~ 5833262 (+)
G327391 NA non-coding downstream 785552 5842219 ~ 5842438 (+)
G328024 NA non-coding downstream 1591613 6648280 ~ 6708779 (+)
klf10 LOC108256604 other upstream 57650 4984415 ~ 4989316 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other upstream 116811 4924781 ~ 4930155 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other upstream 123285 4920980 ~ 4923681 (+)
LOC113532991 LOC108256125 other upstream 612715 4398659 ~ 4434251 (+)
hmgn2 NA other upstream 652182 4391520 ~ 4394784 (+)
acbd7 acbd7,LOC108256514 other downstream 254542 5311209 ~ 5314614 (+)
G326997 NA other downstream 275601 5332268 ~ 5338251 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other downstream 2167355 7224022 ~ 7247279 (+)
LOC113532663 NA other downstream 2844848 7901515 ~ 7902608 (+)
osr2 osr2,LOC106591507 other downstream 3316018 8372685 ~ 8378896 (+)

Expression


Co-expression Network