LOC117595762


Basic Information

Item Value
gene id LOC117595762
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5178282 ~ 5179018 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034297836.1
ATGGTCAGCGCCCTCTCTGTGTTCCAGGGCTTCATAAATGAGGTATTCCGGGAGTACATCAACCGCTTTGTCCTGGTTTATATCGACAACATCCTTGTCTACTCCCGGGATATGGCCAAACATCACCAGCACGTGTCAAAGGTCCTCCAGAAACTCCGTGACCATCATCTGTACCTTAAGACAGAAAAGTGCACGCTCCACCAGTCCACAACTACCTTCCTTGGTTATCAGATTAGTGCCAGAGGCATCCAGATGGACGAGGGGAAGGTCCAAGCCGTCAAGACCTGGCCAATACCCACAACTGTTAAAGAGCTTCAGAGGTTCTTGGGCTTCTCTAATTTCTACCATCGGTTTATCAGAAATTACAGTTCTATCACCTCCCCACTTAACTCCCTCCTCAAGCAAAAGCCCAAATCCCTGTCCTGGACCCAGGAAGCCACTAAGGCCTTTGAAGCCCTGAAAGTGGCTTTCACGACAGCATCCCTCCTGTGCCACCCAGACCCCAGTAAGCCCTTCGTGGTAGAGGTTGATACCTTGACCTCAGGAGTGGGTGCCGTATTGTCTCAGCAGCAGGGGAATCCCTCACATCTCCACCCATGGGCCTATTTTTCCAAAAAACTCACCCTGGCAGAGAAGAACTACGACAGCGGGAACCGTGAATTACTGGCCGTCAAGTTGGCATTGGAAGAGTGAAGGCACTGGTTGGAGGGGGCTCAGCATCCCTTCCTTGTCCTCAC

Function

GO:

id name namespace
GO:0006833 water transport biological_process
GO:0008146 sulfotransferase activity molecular_function
GO:0016782 transferase activity, transferring sulfur-containing groups molecular_function

KEGG:

id description
ko00830 Retinol metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034297836.1 True 737 mRNA 0.52 1 5178282 5179018

Neighbor

gene id symbol gene type direction distance location
LOC117595761 NA coding downstream 9656 5167096 ~ 5168626 (-)
brd9 brd9,LOC107754443,LOC107659091 coding downstream 81096 5085898 ~ 5097186 (-)
zdhhc11 LOC108256534 coding downstream 93214 5072247 ~ 5085068 (-)
LOC113532791 tppp,LOC107565752,LOC107601987,LOC107754442,LOC107677661 coding downstream 108096 5057853 ~ 5070186 (-)
spire1b LOC108256729,LOC108426375 coding downstream 132813 5019773 ~ 5045469 (-)
si:dkey-65b12.6 LOC108256587 coding upstream 26543 5205561 ~ 5216300 (-)
rpp38 rpp38 coding upstream 128423 5307441 ~ 5309104 (-)
abcb4 abcb1,abcb4,LOC107549227,LOC107738866,LOC107689873 coding upstream 153111 5332129 ~ 5349833 (-)
slc25a40 slc25a40,LOC107666862,LOC107592430 coding upstream 212399 5391417 ~ 5400856 (-)
cldn12 cldn12 coding upstream 279215 5458233 ~ 5463036 (-)
G326875 NA non-coding downstream 72316 5104832 ~ 5105966 (-)
G326830 NA non-coding downstream 209735 4967298 ~ 4968547 (-)
G326630 NA non-coding downstream 675681 4501589 ~ 4502601 (-)
LOC113532978 NA non-coding downstream 766881 4408491 ~ 4411401 (-)
G326597 NA non-coding downstream 783508 4385075 ~ 4394774 (-)
G326940 NA non-coding upstream 1798 5180816 ~ 5181017 (-)
G326945 NA non-coding upstream 19205 5198223 ~ 5199406 (-)
G326958 NA non-coding upstream 76777 5255795 ~ 5256011 (-)
G326960 NA non-coding upstream 78033 5257051 ~ 5257276 (-)
G326981 NA non-coding upstream 115714 5294732 ~ 5295232 (-)
ubr5 ubr5 other downstream 200755 4932155 ~ 4977527 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other downstream 831029 4308606 ~ 4347253 (-)
vsig10l vsig10l other downstream 1212167 3957497 ~ 3966115 (-)
znf385d znf385d other downstream 1381914 3720689 ~ 3796368 (-)
LOC113532799 rftn1 other downstream 1773864 3319544 ~ 3404418 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other upstream 650456 5829474 ~ 5978379 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other upstream 1077385 6256403 ~ 6383588 (-)
G328342 LOC108256401 other upstream 1877776 7056794 ~ 7062428 (-)
sec61b sec61b,LOC102796100 other upstream 2199713 7378731 ~ 7386347 (-)
LOC113541109 NA other upstream 4972479 10151497 ~ 10156800 (-)

Expression


Co-expression Network