LOC117595763 (LOC108256304)


Basic Information

Item Value
gene id LOC117595763
gene name LOC108256304
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15273126 ~ 15275076 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034297841.1
ATGCGCTTGCCTTTCTCCAAACACACCCTCCTCTCGGAGGAGCTCTACCGCTTCCTGCTGTCCGCGCTCAGCAGCCGCTGCGTCATTAACGGTGGCGCACGGGACCACCGGCTGAAGGACCTGAAGGAGGCCGCGTGCGATCAAGTGAAAAGATTAAATGACCTTTCCGGGAAGCTGACATCCAAAGAAAGGAAGTTTGGCGACATCACACCAAGGATTGAAGCAGCAGAGCGCGAGCTCGAGGAGATATGCAACCGGACACATGAGCTGCTTCAGCACGAGTACAGTACCCTGATGAATTTGATCGAGCAGAATCAGCAGCAGGCCTTTTTCATCCTGAATGTGCAGAAGGAAACAATAAAGCGGCAACTCCAGCAGCTGCACGAGGACACACAGAACTACCAGAGCAAGTCCACAGCCATGGCCGAGGACATAAAACAGCTCAGCAGCAGAGAGGAGAGCGACAACCCAGCCAGCCTGCTGGGAGAGATCAGCGCACTTGAGACCAGCTTGCACACGATGAACGAGTTTTACTCCTCTGTGGACAAGAAGCTGAAAGTCGATGACACAAGACTGAAAGCTCTGGAAAACTCCATTAAGAAAATCGTGGACAAAAACAGAGACCTTCTGCCACGGCCATGGGAATGTAAGTGCCTTcggatatttttaattataatagagataataaaaaagataatcATAAAAGCTAGTTAAGTAACTACATGAGAAATGCCTGTGGTATGATAATAATACAAGGGTGTAGGGATTTAATTAGGGCACTAAGGAGGGGTAGAAGATCAAGGGGTAGAAGAAGaggaagcctttatttgtcacagatacagtacattacaATACAGTGAAATTGTTTTCATCGCATattccagcttgttaggaatTTGGGGTTAGAGTGAGGGTCAGCTATGATATGGTGCCCCTGATGCAtatagggttaagggccttgctcaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034297841.1 True 967 mRNA 0.48 6 15273126 15275076

Neighbor

gene id symbol gene type direction distance location
LOC117595804 NA coding downstream 3862 15267358 ~ 15269264 (-)
rdh10a rdh10a,rdh10,LOC108256305,LOC107560263,LOC107725699,LOC107754204,LOC107657826,LOC107696016 coding downstream 28101 15229216 ~ 15245025 (-)
dcaf11 dcaf11 coding downstream 152208 15111698 ~ 15120918 (-)
terf1 terf1 coding downstream 318447 14945659 ~ 14954679 (-)
tram1 tram1,LOC107657822 coding downstream 562304 14702024 ~ 14710822 (-)
LOC113541332 NA coding upstream 1507 15276583 ~ 15284155 (-)
LOC117595668 NA coding upstream 10432 15285508 ~ 15288765 (-)
LOC113541204 LOC108256300 coding upstream 62303 15337379 ~ 15380275 (-)
LOC113541141 LOC108256549 coding upstream 123205 15398281 ~ 15414443 (-)
LOC113541144 cntnap2,cntnap2a,LOC108256478,LOC108256479,LOC108256453 coding upstream 142028 15417104 ~ 15559455 (-)
G332196 NA non-coding downstream 475928 14714217 ~ 14797198 (-)
G332164 NA non-coding downstream 638200 14544032 ~ 14634926 (-)
G332147 NA non-coding downstream 708422 14537252 ~ 14564704 (-)
G332169 NA non-coding downstream 750511 14513735 ~ 14522615 (-)
G332056 NA non-coding downstream 806513 14466394 ~ 14466613 (-)
G332580 NA non-coding upstream 70196 15345272 ~ 15397132 (-)
G332637 NA non-coding upstream 291111 15566187 ~ 15566646 (-)
G332676 NA non-coding upstream 345430 15620506 ~ 15620717 (-)
G332682 NA non-coding upstream 355147 15630223 ~ 15630444 (-)
LOC113541266 NA non-coding upstream 660752 15935828 ~ 15943189 (-)
LOC113541115 kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 other downstream 207316 14962837 ~ 15065810 (-)
LOC113541102 msc other downstream 335722 14932995 ~ 14937404 (-)
LOC113541105 NA other downstream 1510511 13757658 ~ 13762615 (-)
LOC113541288 NA other downstream 2595188 12676545 ~ 12677938 (-)
cdv3 cdv3 other downstream 3276426 11944054 ~ 11996700 (-)
sec61g NA other upstream 340422 15615498 ~ 15618842 (-)
cpa6 cpa6,LOC106579545 other upstream 1006195 16281271 ~ 16312916 (-)
oxsr1b oxsr1,oxsr1b other upstream 1554714 16829790 ~ 16879884 (-)
myd88 myd88 other upstream 1610075 16885151 ~ 16889424 (-)
zbtb47b zbtb47,znf652,LOC108256615 other upstream 1841022 17116098 ~ 17139685 (-)

Expression


Co-expression Network