LOC117595764


Basic Information

Item Value
gene id LOC117595764
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19332174 ~ 19335280 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034297842.1
CACAGAGGAGTCAAAAGTAGTGCTCGGCTTCTGTGGTCATCAGTCTCAAAGGACAGAGAATACAAGAGATTTTTCTTCTGAGCGAAGGAACGACTTTTAAACATGAACAGAAAAGAGAAGCCTCAGCATAAAACTatgCAGGGAGCAATGGGAAGTAAACCGCAGCCACAGCCCAGaaaaagagaaggagcaGCGAAGACCAGCGCTCCAGGATTGAGTAGCAGGCCTAGACAGCAAGAACCTGGGCAGCAAACAGCAGGATGTAAACGTACACCTGAGAAAGTTCCGgCCTCTGGGAAATACAGCATGTACCATGCCGTGGTGGCAAACCCGAAAGGACGCTTGCCTCCTATTCACACAGCCAGAAATGGATCAATAGACGCTATGAAGTTCTTAGATGAACTCTTTCAAGGACCTAGTGCTGGACTTGCTGCAAAGAGCACTAGGAAACCAAAACTAAAGAAAGCATCTGAAAGCAAACCTCAGAAAAAGTTGCCTGACATCAGGGTACCTGAAAAACGCAAGTTTAAGAAGCCAGCCGGATTGGGAGCTGATTGGGAGAGATTGGATCAGGACTTGAGCTATTGGCTAAAACATAAGGTTGAGATAAGAGGTAAGACCACCAAGGAGGGAACTGTAAGGAAGAAGTACTCGGATCAACACGTGAGCAATGTAGAGGTAAGGGGATGTAAGACTGCTGAGGATAAAACTGAGGTAGAACCTCAaatcagcagcagctctgaggaTAAGATAAGAGCCAACATTACCAGTGCTGTCCTGGATTACGTAACCTCTGCATCGTTCAGGAGTCAGTTGGCACAGCGCGTTACGGAGGAGATCAATGTTAAAATAGCAAAAGCCGTGTCCCAGACTCATGCGCAACAACATGCCATGAAATTCAGTACGGCAACGAGTAAGGTACAGAACATCTCCCAGGATCTACAATCAACCAACAAATCCGTTAATCAGTCCAGAGTTCAGTCTAAGGCTCCAGCAAGAAGCTGTCAGGAAGAACGAACCAGCAAGCTCGGATTCAGTTACTGTATGGCATCTCTGATTGGCTTTACACTGATAGAATCTAGAGACCAAATGATGGAAAGATTTCAAAGCAAATCACCCATTCCTCCGACAGCAAGCAACAGTGCCACAGAAATAGTGGAAAATGTCTTTGAAAGCATCCTTGCTTCCCCAGAGTCCACTCCAGGAGCCAACAGGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034297842.1 True 1218 mRNA 0.46 8 19332174 19335280

Neighbor

gene id symbol gene type direction distance location
ctnnd2a ctnnd2a,LOC108256437,LOC108438556,LOC107716425 coding upstream 4049 19060889 ~ 19328125 (+)
zc2hc1a zc2hc1a coding upstream 298513 19021006 ~ 19033661 (+)
LOC113541280 LOC108256606 coding upstream 400902 18816234 ~ 18931272 (+)
zfhx4 zfhx4,LOC107666618,LOC107721891,LOC107705239,LOC107590192 coding upstream 543589 18732960 ~ 18788585 (+)
hnf4g hnf4g,LOC107586790,LOC107666612 coding upstream 789414 18530475 ~ 18542760 (+)
ndufb4 ndufb4 coding downstream 56693 19391973 ~ 19395890 (+)
arxa arx,arxa,LOC107586699,LOC107663641 coding downstream 94488 19429768 ~ 19436760 (+)
pcyt1ba pcyt1b,LOC107721854,LOC107590340,LOC107586799,LOC107705205 coding downstream 163022 19498302 ~ 19506536 (+)
mtmr6 mtmr6,LOC107721921,LOC107705267,LOC107590218 coding downstream 244030 19579310 ~ 19593452 (+)
amer2 amer2 coding downstream 265285 19600565 ~ 19603770 (+)
G334575 NA non-coding upstream 398923 18933049 ~ 18933251 (+)
G334573 NA non-coding upstream 399464 18932502 ~ 18932710 (+)
G334386 NA non-coding upstream 478171 18761089 ~ 18854003 (+)
G334371 NA non-coding upstream 605444 18688759 ~ 18726730 (+)
G334733 NA non-coding downstream 10609 19345889 ~ 19351752 (+)
LOC117595782 NA non-coding downstream 186085 19521365 ~ 19522260 (+)
G334806 NA non-coding downstream 225822 19561102 ~ 19589060 (+)
G334888 NA non-coding downstream 369405 19704685 ~ 19707006 (+)
G335214 NA non-coding downstream 431190 19766470 ~ 19766826 (+)
LOC117595806 zfhx4,LOC107590192 other upstream 584697 18712048 ~ 18747477 (+)
G334373 NA other upstream 614221 18693149 ~ 18717953 (+)
mcmdc2 mcmdc2 other upstream 846165 18467878 ~ 18486009 (+)
mtfr1 mtfr1 other upstream 1008879 18315354 ~ 18323295 (+)
G333943 LOC108256468 other upstream 1339160 17986762 ~ 17993014 (+)
G334838 NA other downstream 240831 19576111 ~ 19577073 (+)
cip2a kiaa1524 other downstream 301588 19636868 ~ 19703804 (+)
si:ch73-264p11.1 sh21b other downstream 343201 19678481 ~ 19683870 (+)
G335231 NA other downstream 453303 19788583 ~ 19789058 (+)
smpx smpx,LOC107590224,LOC107663668,LOC107721880,LOC107705278,LOC107671350 other downstream 535101 19870381 ~ 19882836 (+)

Expression


Co-expression Network