tex10 (tex10,LOC107689903)


Basic Information

Item Value
gene id tex10
gene name tex10,LOC107689903
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7153823 ~ 7185065 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034297850.1
ATGTGTAGGCGCCTGTATACGTAAAGGACCCCACATGTAGTAGCTCGATCACAGGATCCAGTGATTGATCAAATTAACTTCATAAAATCGTATTGTTTTGATCTCAAATCTAACAAAACATGAAAAtgtcaaagaagaagaaaaggcagGACGATTTCCATAAAGTGAAACTAAAAGTTGGCAAGAAGAAGCCCAAAGCGGAAAATTCAACTAATGTCAACTTTAAATCGAGGAGCATTCATTTACCGGATCAGCTGAAGCGAGATGACAGTGGACCGACTACACACCGACAGCTCAGTATTAAGGATCTGCTGTCCCAGCTGCACCACTACAGCAGCAGTGTGAAGCAGGGTGCTCTCGTAGGCCTTCGTGAGCTGCTCTCAGCTCATCCATCCCTGCTCGAGCAGCATGCATCAGTCGTGCTCGCCGAAGTCGCTGCACTCTTCACTGATAAAGACGGCGCTGTGCGGGCAGCCGGTTCACGTCTCCTGCGCTTGGTGGCGCAGTGCTTGCCAGCCGAGCGTGTGGCTCCATTCTTCCCTCTGCTTGGCGCTCACCTCTCCTGCGCCATGACCCACGTCTCGACTGGTATCCAGGAGGATGCGCTGCGGGTGCTGGACGTGCTGCTTGAGCACTATCCTGCTCTGCTAGCACAGAGACATGCCGTGCTGCTTTCAAACTTCCTCGAGCTCATCTCGCAGAGGCGGATGAGTGGCACAACGGACGGAGGCAGAGCCAGTGGAGATCGGGCGGAGAAAGGAAGCTATGCGCTTTCTATAAGCACTAGTCGATCTGTTACAGCGCAGCAATGGAGACTCACTGTCCTGCTCAGGTTGGGCCGGTTTCTTCAGGCAGTCGTGGAGGAGAGGCCTACAGAAGACGGTGTAGTGTGTGGAAGTGGCTTCGGGATACGGAATGGAGAGAAAGGGATGGTCACACCTGTAGAAATCAACTGGGAGGAGCAGATATTCAGTAAAGAGAGCATTCAAGTGTTTGAGAATTCCGGAGCAAAGCCCACACCACGCTCCACCTATCGGCTAAGGCTGGATTTGGAGCCTGGAGCTGGAGTGAGTGAGGACCTGTGTTCAGCAGAGACAGTGCAGGGTTTCGCTGGTACGCTGGTGCCTCTCCTCCTGGAGGTGTGGGTGGAGGCCGTGGGTGGAGGACGAGCTCAGACAGACAGCGGGCACCTGCTCTCAGAGGAAGCCATGGCACTCATGTTCCAGATCCTTACAATACTGCAGCTACTGAGACGTCTCACACCTCAGAAAGACCAACAGGACATGTtgGATTCCTGGTTTCGAAATTCTTACCTGAATGATTTCAAGCAGCACTTCATGAAGAATTTCCCCTACGGACAGCTAGAGGTGGCCAGACACaagaagaaaatggatggaaagagGAACAGGCAGCAGATGATGGGTGGCATTAATGCTGCAGGAACTGTAGAGCCACTGGCTCTGAATGTCATGCTGTGTCAGGTAATGGTGACGCTCAGCCTGAGGGGGCGGGACCACATCGCCGGCCAGGATGCAGACTGGCTCGGGCCAATCCGAGCCTTTGTTACAGACACACTGTCCAGTGGCGGGAAGCTGAGCTCTAAGCACCTCGCTGCTCTGTTGGAGGTGGTTTGGAGGATGATTGTTACCCAGCGAAGCCGTGcCGTGACGGAAGAGCTCCTACAAGCTGTGTATTTTCAGTATCAACAGAAGAACTTGATACTGTCTGTGCGCACCCTGTTGCTGCGTTTCTTTAGTCAACTCTACATACAAGAGCACCAGAACCAGCCTCATATCGCCAGgaGCAGGATTTTGACACGGTGGTTGGCATCTTTGCCGCTGCAGTTGGCGCAGTTGGGTGGCCGTAATCCTCAACTGTCTGCACAGATCCTGCAGACGGTGCAGTCAGCTGCAGCCTGGGGCAACAAAGACCTGCTGCACAGTCTGCAGACGCATGCAGGCAGCCTGTATGatccTCAGGAgggctgtgttgtgttgttgccGGTGGAACAGCAACAGCGCTTGGTTCAGATCCTGTTCTACCTGCCAGCGTTTCCTGCTGATGTTCTGGCCTGCCTCAGTCAAGTGTGTAACACAGGCAGGGTTTCTGCAAGTCTTGCTGCCACACTCATCCGCACAGTACACTTcagGTCTCCTTTAAGTGGCTGGTCCAGCAGTTCGCAGGATGTGCCAGTGCGGGACGTGGATTACTTCAGTTTCCTTTTCTCAACACTGAcagGTTTCTCATCTGAGAGACTGAGGACCCTACAGCAGGCAGATGATGAAGGGATGCTGCCCTCGTCAGCCCTCTCACCCCTCAGCGTGTTCACCACACCACTCGAGCAGTTCACGCACCACTGGGACGTGGTCGAGGAAGTATGTCACTGTTTGGAGACGTTGGGTTCTCGAGGGCAGTGTTTTGAAATCTTGCAAAATGCCATCATCAAGAACCTGTGTGGGTTGGTGGTCGTGCCGGACTGCATGTGTGCCGCCCTGCTGAGGTGTATTCCACGGTTGCTGGATCACAACCTCCTGCCCAACGACACACTCCTCCACTTCTTGGCTGACTGTTGTCTGAGCATGCTCAGTCTGCTGCTGCAGCTGGAGCAAAGTGCCCGCAAGAgGGACGCAGTATGGGAGGCGTGTTTTGCTGCGCTGAGCACAGTGCCACGTCTTTTGCGATTGGTTCTGCAGTCTCTACGTGTGTGTGACCTGTGCGAGGAGGAGCTTCCCCTGCTGGCTCAGATCCTCTCGTTGCTcctgcagcacacacagctCCGCAATCACGTAGCCGCCAACGCCGCCTTGATGCAGACCATCGTCCAGGACCTGACGcGCTACCACGGTGGTGAGACCCGAGAGCAGTGGCTAACAGACCTGCTGTACTGCTACAGCGTGACGCTGTCGAGTCACCGTGCCAACATGGCCATGAGGGATATTTACTAATCTCCTGAGCTATCTTCACCTCTCTGCTTTCCTCTCACCTTCTTCCTCTTTCCATGTTCACAAATGTTGCTTTTATAGACTAcgaggaaaaaataaacatgttggGATAATTAATGAA
>XM_034297851.1
CTATTTTTTGTTCCGCCtgtattactatttttaaaaaaaatttaattattattaacaacaacagaGTATACGATACAATCTAGAGTGTACATATAACGTTTGCGAACAAGAACATCGTCAGGGGAAAAtgtcaaagaagaagaaaaggcagGACGATTTCCATAAAGTGAAACTAAAAGTTGGCAAGAAGAAGCCCAAAGCGGAAAATTCAACTAATGTCAACTTTAAATCGAGGAGCATTCATTTACCGGATCAGCTGAAGCGAGATGACAGTGGACCGACTACACACCGACAGCTCAGTATTAAGGATCTGCTGTCCCAGCTGCACCACTACAGCAGCAGTGTGAAGCAGGGTGCTCTCGTAGGCCTTCGTGAGCTGCTCTCAGCTCATCCATCCCTGCTCGAGCAGCATGCATCAGTCGTGCTCGCCGAAGTCGCTGCACTCTTCACTGATAAAGACGGCGCTGTGCGGGCAGCCGGTTCACGTCTCCTGCGCTTGGTGGCGCAGTGCTTGCCAGCCGAGCGTGTGGCTCCATTCTTCCCTCTGCTTGGCGCTCACCTCTCCTGCGCCATGACCCACGTCTCGACTGGTATCCAGGAGGATGCGCTGCGGGTGCTGGACGTGCTGCTTGAGCACTATCCTGCTCTGCTAGCACAGAGACATGCCGTGCTGCTTTCAAACTTCCTCGAGCTCATCTCGCAGAGGCGGATGAGTGGCACAACGGACGGAGGCAGAGCCAGTGGAGATCGGGCGGAGAAAGGAAGCTATGCGCTTTCTATAAGCACTAGTCGATCTGTTACAGCGCAGCAATGGAGACTCACTGTCCTGCTCAGGTTGGGCCGGTTTCTTCAGGCAGTCGTGGAGGAGAGGCCTACAGAAGACGGTGTAGTGTGTGGAAGTGGCTTCGGGATACGGAATGGAGAGAAAGGGATGGTCACACCTGTAGAAATCAACTGGGAGGAGCAGATATTCAGTAAAGAGAGCATTCAAGTGTTTGAGAATTCCGGAGCAAAGCCCACACCACGCTCCACCTATCGGCTAAGGCTGGATTTGGAGCCTGGAGCTGGAGTGAGTGAGGACCTGTGTTCAGCAGAGACAGTGCAGGGTTTCGCTGGTACGCTGGTGCCTCTCCTCCTGGAGGTGTGGGTGGAGGCCGTGGGTGGAGGACGAGCTCAGACAGACAGCGGGCACCTGCTCTCAGAGGAAGCCATGGCACTCATGTTCCAGATCCTTACAATACTGCAGCTACTGAGACGTCTCACACCTCAGAAAGACCAACAGGACATGTtgGATTCCTGGTTTCGAAATTCTTACCTGAATGATTTCAAGCAGCACTTCATGAAGAATTTCCCCTACGGACAGCTAGAGGTGGCCAGACACaagaagaaaatggatggaaagagGAACAGGCAGCAGATGATGGGTGGCATTAATGCTGCAGGAACTGTAGAGCCACTGGCTCTGAATGTCATGCTGTGTCAGGTAATGGTGACGCTCAGCCTGAGGGGGCGGGACCACATCGCCGGCCAGGATGCAGACTGGCTCGGGCCAATCCGAGCCTTTGTTACAGACACACTGTCCAGTGGCGGGAAGCTGAGCTCTAAGCACCTCGCTGCTCTGTTGGAGGTGGTTTGGAGGATGATTGTTACCCAGCGAAGCCGTGcCGTGACGGAAGAGCTCCTACAAGCTGTGTATTTTCAGTATCAACAGAAGAACTTGATACTGTCTGTGCGCACCCTGTTGCTGCGTTTCTTTAGTCAACTCTACATACAAGAGCACCAGAACCAGCCTCATATCGCCAGgaGCAGGATTTTGACACGGTGGTTGGCATCTTTGCCGCTGCAGTTGGCGCAGTTGGGTGGCCGTAATCCTCAACTGTCTGCACAGATCCTGCAGACGGTGCAGTCAGCTGCAGCCTGGGGCAACAAAGACCTGCTGCACAGTCTGCAGACGCATGCAGGCAGCCTGTATGatccTCAGGAgggctgtgttgtgttgttgccGGTGGAACAGCAACAGCGCTTGGTTCAGATCCTGTTCTACCTGCCAGCGTTTCCTGCTGATGTTCTGGCCTGCCTCAGTCAAGTGTGTAACACAGGCAGGGTTTCTGCAAGTCTTGCTGCCACACTCATCCGCACAGTACACTTcagGTCTCCTTTAAGTGGCTGGTCCAGCAGTTCGCAGGATGTGCCAGTGCGGGACGTGGATTACTTCAGTTTCCTTTTCTCAACACTGAcagGTTTCTCATCTGAGAGACTGAGGACCCTACAGCAGGCAGATGATGAAGGGATGCTGCCCTCGTCAGCCCTCTCACCCCTCAGCGTGTTCACCACACCACTCGAGCAGTTCACGCACCACTGGGACGTGGTCGAGGAAGTATGTCACTGTTTGGAGACGTTGGGTTCTCGAGGGCAGTGTTTTGAAATCTTGCAAAATGCCATCATCAAGAACCTGTGTGGGTTGGTGGTCGTGCCGGACTGCATGTGTGCCGCCCTGCTGAGGTGTATTCCACGGTTGCTGGATCACAACCTCCTGCCCAACGACACACTCCTCCACTTCTTGGCTGACTGTTGTCTGAGCATGCTCAGTCTGCTGCTGCAGCTGGAGCAAAGTGCCCGCAAGAgGGACGCAGTATGGGAGGCGTGTTTTGCTGCGCTGAGCACAGTGCCACGTCTTTTGCGATTGGTTCTGCAGTCTCTACGTGTGTGTGACCTGTGCGAGGAGGAGCTTCCCCTGCTGGCTCAGATCCTCTCGTTGCTcctgcagcacacacagctCCGCAATCACGTAGCCGCCAACGCCGCCTTGATGCAGACCATCGTCCAGGACCTGACGcGCTACCACGGTGGTGAGACCCGAGAGCAGTGGCTAACAGACCTGCTGTACTGCTACAGCGTGACGCTGTCGAGTCACCGTGCCAACATGGCCATGAGGGATATTTACTAATCTCCTGAGCTATCTTCACCTCTCTGCTTTCCTCTCACCTTCTTCCTCTTTCCATGTTCACAAATGTTGCTTTTATAGACTAcgaggaaaaaataaacatgttggGATAATTAATGAA

Function

symbol description
tex10 Predicted to be located in nucleolus. Predicted to be part of MLL1 complex. Predicted to be active in nucleus. Orthologous to human TEX10 (testis expressed 10).

NR:

description
testis-expressed protein 10 homolog

GO:

id name namespace
GO:0071339 MLL1 complex cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
K14827 IPI1, TEX10; pre-rRNA-processing protein IPI1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034297850.1 False 3063 mRNA 0.53 16 7154176 7185065
XM_034297851.1 True 3065 mRNA 0.53 16 7153823 7185065

Neighbor

gene id symbol gene type direction distance location
rbm12ba NA coding upstream 30432 7121016 ~ 7123391 (+)
nacad LOC108256401,LOC107579097 coding upstream 88674 7050652 ~ 7065149 (+)
tbrg4 tbrg4 coding upstream 110153 7029781 ~ 7043670 (+)
LOC113532640 LOC108256717 coding upstream 394001 6654775 ~ 6759822 (+)
upk1a upk1a coding upstream 827463 6319087 ~ 6326360 (+)
alg2 alg2,LOC107595974,LOC107706186 coding downstream 201515 7386580 ~ 7390884 (+)
LOC113532919 frrs1l,LOC107595962 coding downstream 232309 7417374 ~ 7424191 (+)
tmem245 tmem245,LOC107706205,LOC107687814,LOC107723436,LOC107595951 coding downstream 241214 7426279 ~ 7451187 (+)
ino80c ino80c coding downstream 393924 7578989 ~ 7583831 (+)
trim35-28 LOC108256499 coding downstream 705563 7890628 ~ 7897309 (+)
G328260 NA non-coding upstream 17101 7128166 ~ 7136722 (+)
G328222 NA non-coding upstream 108545 7045046 ~ 7045278 (+)
G328208 LOC108256403,LOC108426361 non-coding upstream 124422 7023155 ~ 7029401 (+)
G328161 NA non-coding upstream 192447 6949559 ~ 6961376 (+)
G328024 NA non-coding upstream 445044 6648280 ~ 6708779 (+)
G328313 NA non-coding downstream 82669 7267734 ~ 7268762 (+)
G328427 NA non-coding downstream 188215 7373280 ~ 7373500 (+)
G328441 NA non-coding downstream 207176 7392241 ~ 7392448 (+)
G328620 NA non-coding downstream 472076 7657141 ~ 7659079 (+)
G328750 NA non-coding downstream 920197 8105262 ~ 8105462 (+)
G326997 NA other upstream 1815572 5332268 ~ 5338251 (+)
acbd7 acbd7,LOC108256514 other upstream 1839209 5311209 ~ 5314614 (+)
klf10 LOC108256604 other upstream 2164507 4984415 ~ 4989316 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other upstream 2223668 4924781 ~ 4930155 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other upstream 2230142 4920980 ~ 4923681 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other downstream 38957 7224022 ~ 7247279 (+)
LOC113532663 NA other downstream 716450 7901515 ~ 7902608 (+)
osr2 osr2,LOC106591507 other downstream 1187620 8372685 ~ 8378896 (+)
LOC113532774 vps13b other downstream 1203122 8388187 ~ 8550238 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other downstream 1430008 8615073 ~ 8665836 (+)

Expression


Co-expression Network