LOC117595771


Basic Information

Item Value
gene id LOC117595771
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 455516 ~ 456979 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034297869.1
AACCaatcaaaatgtttaaagacgACTCCTGTTAAAGGAAGCCTCATGGGCCTTCAGGGTGTGTCGACTGGAAAGACATGAGGTTCTGTTTTGGAGTGAAGACTGCAGGCAGCATGAAGGAGTTGATCTTTGGTGTGTTCTTGGTTACAATGGGAGTCTTCTCTCAAAGTTGGGCGATTCTACTCCCTTTAGGTCTTCCAGTGGAAAtttgTTACACTCAGTGGTTTGACCGTGACAATCCTAGTGGATTAGGAGATTATGAAACACTCGACCAGCTGAGAGCAGAATATCCAGGGACAATCTGTCCCAAGCCTTTAACCATTGAAGCTCAGACTGTCTCTGGTACTCCAGCCTCAAGCACTGGACAAGTGTTTCAATActacAACACGGTGTATGGCTTTGCCTGTGTGAATTCTCAGCAGAAATTGGGAAGTTGTCTGGATTATAAGGTGCGTTTTAGGTGCCCGTGTCTTGACCTTGAGGTTCTCTGATCAACCTGTGGCTTGAGTTAAACGTGTTGACCTTCAGGCATCTTATTGCAACCTTGTTAATTCGTGTTGCTTCCTGTCTCTTAACTCAAATGTGTATTGAGAACATGTACAGAATGAACTTTCTTTTGGAGAGTAATCGCATGAGCAATTTGTATCCCCTGTAATGAGAAactgaataatgaaaaaaaaaa
>XM_034297870.1
GTGTCGACTGGAAAGACATGAGTTTTGGAGTGAAGACTGCAGGCAGCATGAAGGAGTTGATCTTTGGTGTGTTCTTGGTTACAATGGGAGTCTTCTCTCAAAGTTGGGCGATTCTACTCCCTTTAGGTCTTCCAGTGGAAAtttgTTACACTCAGTGGTTTGACCGTGACAATCCTAGTGGATTAGGAGATTATGAAACACTCGACCAGCTGAGAGCAGAATATCCAGGGACAATCTGTCCCAAGCCTTTAACCATTGAAGCTCAGACTGTCTCTGGTACTCCAGCCTCAAGCACTGGACAAGTGTTTCAATActacAACACGGTGTATGGCTTTGCCTGTGTGAATTCTCAGCAGAAATTGGGAAGTTGTCTGGATTATAAGGTGCGTTTTAGGTGCCCGTGTCTTGACCTTGAGGTTCTCTGATCAACCTGTGGCTTGAGTTAAACGTGTTGACCTTCAGGCATCTTATTGCAACCTTGTTAATTCGTGTTGCTTCCTGTCTCTTAACTCAAATGTGTATTGAGAACATGTACAGAATGAACTTTCTTTTGGAGAGTAATCGCATGAGCAATTTGTATCCCCTGTAATGAGAAactgaataatgaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034297869.1 True 682 mRNA 0.43 6 455516 456979
XM_034297870.1 False 616 mRNA 0.43 6 455576 456979

Neighbor

gene id symbol gene type direction distance location
dpy19l1l dpy19l1 coding upstream 104967 333684 ~ 350549 (+)
zgc:114181 LOC108261199 coding upstream 224022 222517 ~ 231494 (+)
ethe1 ethe1,LOC106582613,LOC106605166 coding upstream 340370 108218 ~ 115146 (+)
LOC113525556 LOC108278024 coding upstream 347718 96799 ~ 107798 (+)
xrcc1 xrcc1,LOC107565304,LOC107737754 coding upstream 359788 77198 ~ 95728 (+)
LOC113524801 NA coding downstream 3234 460213 ~ 466623 (+)
ppox ppox coding downstream 12977 469956 ~ 483298 (+)
zgc:162160 LOC108256255,LOC108437392,LOC107719116,LOC107666762,LOC107737835,LOC107592933 coding downstream 48335 505314 ~ 524157 (+)
etsrp LOC108256243 coding downstream 193939 650918 ~ 657392 (+)
pycard NA coding downstream 201502 658481 ~ 663976 (+)
G324116 smarcc1 non-coding upstream 9391 444777 ~ 446125 (+)
G324083 NA non-coding upstream 17706 365488 ~ 437810 (+)
G324089 NA non-coding upstream 94451 359123 ~ 361065 (+)
G324064 NA non-coding upstream 100213 326531 ~ 355303 (+)
G324082 NA non-coding upstream 122715 331923 ~ 332801 (+)
G324139 NA non-coding downstream 86889 543868 ~ 548283 (+)
G324140 LOC106578455,LOC103388722 non-coding downstream 95744 552723 ~ 557118 (+)
G324142 dyrk1b,LOC102785375 non-coding downstream 98818 555797 ~ 556519 (+)
G324151 NA non-coding downstream 116027 573006 ~ 575138 (+)
G324125 NA non-coding downstream 128200 585179 ~ 588909 (+)
G324085 NA other upstream 13229 438391 ~ 442287 (+)
G324067 NA other upstream 43407 354781 ~ 412109 (+)
tbx20 tbx20,LOC107600539,LOC107719124,LOC107592953,LOC107666841 other upstream 127577 240370 ~ 327939 (+)
G324068 NA other upstream 162928 241197 ~ 292588 (+)
cmc1 cmc1 other upstream 261671 182467 ~ 193845 (+)
G324143 NA other downstream 100436 557415 ~ 558139 (+)
G324123 NA other downstream 110223 567202 ~ 635045 (+)
G324161 fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489 other downstream 150633 607612 ~ 610009 (+)
G324206 NA other downstream 288694 745673 ~ 748475 (+)
psmc4 psmc4,LOC107719110 other downstream 317310 774289 ~ 806528 (+)

Expression


Co-expression Network