LOC113532734


Basic Information

Item Value
gene id LOC113532734
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2295318 ~ 2296990 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034297878.1
TTACGTCAAAGAACAGATAGATGTTGGTTTAATAAATGTGACCATTAGAGGAGGCTGCACTGATTCTGGAATTGATTTTAATACCACAGGCCTgagaaaagtttttaaatgacTTATCTTGCTATGTTACAGAAAGAACATTTGCCTCATTTTAGACAGGACCTCTTTCCTGACATCCAATATGAGCAGTGTGGCAGAATGGATTCTGGAGAATAAGGACAAGATTGAAAAGGGAGTGGAGATCCTAGGCCAAAGCTGTGAGATCCTGGCGAAGACAGTAGGCCAGTTCCATCCTGTCCTAGAGATGTTTTTTAAGGTCTCAGCTGAGTTCCTTCACAACCCAGAGGGCAAACAGGCTACGTATCTTGCTCAACAGTTTGAAAGAGTCAACCAGAAGTTGGAAAAGATCCAAGCTGagagtgaaaaaataaagctgGCGCTGCAGCGATCATTGGTGAACATCCAGAACTTTAAGTTCTACACACAGATAATCAACCagtatgaaatgtttaaatatattttcacagcCAAACCCAAGTTTAAGGAGTTGAAGATAGACGAGTTCCTCATCTACTATGATGAATATGAGGGAGACAAGAACCTTGATTGTTTGTACAATGCCATCATTAAAGAGAACGTGCTGGGCACAATAGTGGACTCTGAGCAGCGGAGCAGGAGGGCAGTGGAGGAATCCTGTTCTTGCCTGAAGAAGGTGTTTGTGGTTGGGATCATAGCATTGATGGGCTACACTGCACTAAAGGAAGGCACTGTTGGAGAGGATATGGTGAAGAAATGGCAAGAACGCATGGAGGACGTGGAGAAGCGCATGAAGGTGGCAGTGGATGAATGTGTGAACAACTTCGCTGAGCAAGCCGAGATTGACATAGATCAGAAGCTCAAGGAGAAGCAGAGCAGTGTCGACCCTGAGTTTACTGAATTCCTACTGGATGCCCTTGTCAAGAAGTACGACTGGGTCTCGTGGTCAGTCAGGGTGtttaaagatgatgatgacagcAAACTTGGGAGATTTCTGTTTGGCAAGCAGCAACATGTAAGTGGTGGAAATGTCAATTATTTTGAGCATTTgtgcaataataaaataaggGTTGTGGTGTCTTTCACTACAGACCCTAAACCACTCAATAAGAGCCAGATAAAGGATCAAATAGAGGAAGAGAAAGGTGATATGAAATCTGTGGCTGAGTCTCTGTGCAAGAGTCTTCCCAACTGCCATGTGCATGCTGTCAGTCGCAAAGTGGAGGAAGCCAACAATTTCGACCCTGAGTGCTATTATTATGCGGTTCACAAAAGGGCACACATTTGTATCCACTCAGAATAATGGAATTTAGATCAAACTAAATATGCtgatgttatatatattttatagatttttctgtctttttcttctctgGTCTAAAGCAATGCAATCATATGAAATGTGCCAAGACAAACAATTCCAGTTCCATTATTTTGCTTCTTATTCTCTGTAATCTGTAAAATCGCATATGTGACTACCTTATaagaaaatgtatgaatttaatCAAAAATGTTTAATCAAGGGTATTATGCATACACTATATGCCTgagcatttttgttttcttttgatcAAATTTAAGTAAAATGGTAGGGTGTTTCTAAACATCATCTGTACCAGGTGGTGCTGTAATGATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034297878.1 True 1673 mRNA 0.41 1 2295318 2296990

Neighbor

gene id symbol gene type direction distance location
LOC113532739 LOC108256190,LOC108256173 coding upstream 4363 2279949 ~ 2290955 (+)
LOC113532737 LOC108256188,LOC108256189,LOC108433880,LOC103039167,LOC105891956,LOC106605297,LOC103372036 coding upstream 18920 2273635 ~ 2276398 (+)
LOC113532732 LOC108256179,LOC108433877,LOC108433850,LOC108256180,LOC108433878,LOC103039774 coding upstream 33431 2252123 ~ 2261887 (+)
LOC113533073 LOC108256177,LOC108433879,LOC105891878 coding upstream 54908 2237788 ~ 2240410 (+)
rpz LOC108256188,LOC108256189,LOC108433880,LOC103039167,LOC105891956,LOC103372036,LOC106605297 coding upstream 62619 2220806 ~ 2232699 (+)
LOC113532735 LOC108256190,LOC108256173 coding downstream 13055 2310045 ~ 2312370 (+)
LOC113532733 LOC108256181 coding downstream 16674 2313664 ~ 2316510 (+)
LOC113532738 LOC108256190,LOC108256173 coding downstream 21328 2318318 ~ 2324066 (+)
LOC113532585 LOC108256181 coding downstream 32258 2329248 ~ 2333724 (+)
ubqln4 ubqln4,LOC107726678,LOC107756885,LOC106580647 coding downstream 42463 2339453 ~ 2349519 (+)
G325089 NA non-coding upstream 274930 2020184 ~ 2020388 (+)
G325076 apoa2 non-coding upstream 283337 1993256 ~ 2011981 (+)
LOC117595767 NA non-coding upstream 294314 2000137 ~ 2001004 (+)
G324947 NA non-coding upstream 362992 1927080 ~ 1932326 (+)
G324889 NA non-coding upstream 556063 1735619 ~ 1739255 (+)
G325247 NA non-coding downstream 37889 2334879 ~ 2335106 (+)
G325268 NA non-coding downstream 99683 2396673 ~ 2396887 (+)
G325271 NA non-coding downstream 103480 2400470 ~ 2400684 (+)
G325462 NA non-coding downstream 347051 2644041 ~ 2647583 (+)
G325697 NA non-coding downstream 774859 3071849 ~ 3072073 (+)
LOC113533074 LOC108256184 other upstream 79908 2204846 ~ 2215410 (+)
bola1 bola1,LOC107592543 other upstream 150793 2142192 ~ 2144525 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other upstream 375608 1899626 ~ 1919710 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other upstream 1131704 1118268 ~ 1163614 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other upstream 1285095 956584 ~ 1010223 (+)
G325435 NA other downstream 268710 2565700 ~ 2569739 (+)
hamp NA other downstream 1714390 4011380 ~ 4013538 (+)
hmgn2 NA other downstream 2094530 4391520 ~ 4394784 (+)
LOC113532991 LOC108256125 other downstream 2101669 4398659 ~ 4434251 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other downstream 2623990 4920980 ~ 4923681 (+)

Expression


Co-expression Network