sept7b (LOC108256449,LOC108413590,LOC108441798)


Basic Information

Item Value
gene id sept7b
gene name LOC108256449,LOC108413590,LOC108441798
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2627651 ~ 2647474 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034297891.1
CCGCTGCGCACTTTGCGTAAGCCGGAGCCGCTGTGCCGCGGCTACGTGACGTAAGGCGCGTAGAGTTTTTTGCGGAAGTGTTAGCAGGGGAATGTCGGCTTGGTTTCTCAAGCAGCTCTGAACGGCAATATTATGGCACAGCAGAAGAATCTCGAGGGATACGTCGGCTTCGCCAGCCTCCCCAACCAAGTCTACCGGAAGTCTGTGAAACGGGGTTTTGAGTTCACACTAATGGTTGTGGGTGAATCAGGCTTGGGCAAGTCCACGATGATTaactctctcttcctcaccgAACTGTACTCCTCAGAACACCCGGGTCCGTCACACCGAGTCAAGAAAACCGTACAGGTCGAGCAGTCTAAAGTGTTGATGAAGGAGGGTGGTGTTCAGCTGCTGCTCACGATGGTGGACACTCCGGGGTTTGGAGATGCTGTAGATAACAGTAactgCTGGCAGCCGGTCATCGATCACATCGACAGCAAGTTTGAGGATTACCTGAACGCAGAGTCGCGTGTTAACAGGAGGCAGATGCCCGACAACAGAGTTCACTGCTGCCTGTACTTCATCGCTCCCTCAGGACACGGACTGAAGCCGCTGGACATCGAGTTCATGAAACGGTTGCATGAGAAGGTGAACATCATCCCTCTGATCGCCAAGGCAGATACGCTCACTCCTGAAGAGTGCCAACAGTTTAAGAAACAGATCATGAGAGAAATCCAGGAGCACAAAATCAAAATCTACGAGTTTCCGGAGACCGACGACGAAGAGGAGAACAAGCTTGTGAAAAAGATCAAAgatcgACTTCCTCTGGCTGTAGTTGGCAGCAACACCATCATCGAAGTGAACGGGAAGAAGGTTAGAGGGAGACAGTACCCATGGGGCGTGGCAGAAGTTGAGAATGGAGACCACTGTGATTTCACCATTCTGCGGAACATGCTCATCAGGACTCACATGCAGGACCTGAAGGACGTCACCAACAACGTCCACTACGAGAACTACAGGAGCAGGAAGCTGGCGGCCGTCACCTGCAACGGGATGGACAACAACAAGACCAAAGGACAGCTCACCAAAGCTGACTCGGTTGAAGGCATGAGCCCTCTGGCACAGATGGAGGAGGAAAGGCGAGAGCACGTGGCTAAGATGAagaagatggagatggagatggagcaggtgtttgagatgaAAGTCAAGGAGAAAGTCCAGACAGCTTTAAAAGCACTGCCGTGTAAAGATTTTCTGTCTAAAACACTTGGATTTTACggttgtgtgcaaaagtttaggcACCCCTGAAGCTACTTGATCTGT
>XM_034297892.1
CGGAGCCGCTGTGCCGCGGCTACGTGACGTAAGGCGCGTAGAGTTTTTTGCGGAAGTGTTAGCAGGGGAATGTCGGCTTGGTTTCTCAAGCAGCTCTGAACGGCAATATTATGGCAGCAGAAGAATCTCGAGGGATACGTCGGCTTCGCCAGCCTCCCCAACCAAGTCTACCGGAAGTCTGTGAAACGGGGTTTTGAGTTCACACTAATGGTTGTGGGTGAATCAGGCTTGGGCAAGTCCACGATGATTaactctctcttcctcaccgAACTGTACTCCTCAGAACACCCGGGTCCGTCACACCGAGTCAAGAAAACCGTACAGGTCGAGCAGTCTAAAGTGTTGATGAAGGAGGGTGGTGTTCAGCTGCTGCTCACGATGGTGGACACTCCGGGGTTTGGAGATGCTGTAGATAACAGTAactgCTGGCAGCCGGTCATCGATCACATCGACAGCAAGTTTGAGGATTACCTGAACGCAGAGTCGCGTGTTAACAGGAGGCAGATGCCCGACAACAGAGTTCACTGCTGCCTGTACTTCATCGCTCCCTCAGGACACGGACTGAAGCCGCTGGACATCGAGTTCATGAAACGGTTGCATGAGAAGGTGAACATCATCCCTCTGATCGCCAAGGCAGATACGCTCACTCCTGAAGAGTGCCAACAGTTTAAGAAACAGATCATGAGAGAAATCCAGGAGCACAAAATCAAAATCTACGAGTTTCCGGAGACCGACGACGAAGAGGAGAACAAGCTTGTGAAAAAGATCAAAgatcgACTTCCTCTGGCTGTAGTTGGCAGCAACACCATCATCGAAGTGAACGGGAAGAAGGTTAGAGGGAGACAGTACCCATGGGGCGTGGCAGAAGTTGAGAATGGAGACCACTGTGATTTCACCATTCTGCGGAACATGCTCATCAGGACTCACATGCAGGACCTGAAGGACGTCACCAACAACGTCCACTACGAGAACTACAGGAGCAGGAAGCTGGCGGCCGTCACCTGCAACGGGATGGACAACAACAAGACCAAAGGACAGCTCACCAAAGCTGACTCGGTTGAAGGCATGAGCCCTCTGGCACAGATGGAGGAGGAAAGGCGAGAGCACGTGGCTAAGATGAagaagatggagatggagatggagcaggtgtttgagatgaAAGTCAAGGAGAAAGTCCAGACAGCTTTAAAAGCACTGCCGTGTAAAGATTTTCTGTCTAAAACACTTGGATTTTACggttgtgtgcaaaagtttaggcACCCCTGAAGCTACTTGATCTGT
>XM_034297893.1
CCGCTGCGCACTTTGCGTAAGCCGGAGCCGCTGTGCCGCGGCTACGTGACGTAAGGCGCGTAGAGTTTTTTGCGGAAGTGTTAGCAGGGGAATGTCGGCTTGGTTTCTCAAGCAGCTCTGAACGGCAATATTATGGCACAGCAGAAGAATCTCGAGGGATACGTCGGCTTCGCCAGCCTCCCCAACCAAGTCTACCGGAAGTCTGTGAAACGGGGTTTTGAGTTCACACTAATGGTTGTGGGTGAATCAGGCTTGGGCAAGTCCACGATGATTaactctctcttcctcaccgAACTGTACTCCTCAGAACACCCGGGTCCGTCACACCGAGTCAAGAAAACCGTACAGGTCGAGCAGTCTAAAGTGTTGATGAAGGAGGGTGGTGTTCAGCTGCTGCTCACGATGGTGGACACTCCGGGGTTTGGAGATGCTGTAGATAACAGTAactgCTGGCAGCCGGTCATCGATCACATCGACAGCAAGTTTGAGGATTACCTGAACGCAGAGTCGCGTGTTAACAGGAGGCAGATGCCCGACAACAGAGTTCACTGCTGCCTGTACTTCATCGCTCCCTCAGGACACGGACTGAAGCCGCTGGACATCGAGTTCATGAAACGGTTGCATGAGAAGGTGAACATCATCCCTCTGATCGCCAAGGCAGATACGCTCACTCCTGAAGAGTGCCAACAGTTTAAGAAACAGATCATGAGAGAAATCCAGGAGCACAAAATCAAAATCTACGAGTTTCCGGAGACCGACGACGAAGAGGAGAACAAGCTTGTGAAAAAGATCAAAgatcgACTTCCTCTGGCTGTAGTTGGCAGCAACACCATCATCGAAGTGAACGGGAAGAAGGTTAGAGGGAGACAGTACCCATGGGGCGTGGCAGAAGTTGAGAATGGAGACCACTGTGATTTCACCATTCTGCGGAACATGCTCATCAGGACTCACATGCAGGACCTGAAGGACGTCACCAACAACGTCCACTACGAGAACTACAGGAGCAGGAAGCTGGCGGCCGTCACCTGCAACGGGATGGACAACAACAAGACCAAAGGACAGCTCACCAAGAGCCCTCTGGCACAGATGGAGGAGGAAAGGCGAGAGCACGTGGCTAAGATGAagaagatggagatggagatggagcaggtgtttgagatgaAAGTCAAGGAGAAAGTCCAGACAGCTTTAAAActgcAGCGGCGTCACGAGCAGATGAAGAAGAACCTGGAGGCTCAGCACAAGGAGCTAGAAGAAAGGAAACGTCAGTTCGAGGAGGAGAGAGTGAACTGGGAGACCCAGCAGCGCCTCCTCGAGCAGCAGAAACTCGACGCTTCCAGGACTCTGGAAAAGAAAGCGAAAAAAGGgaagatattttaaaaaccGCTTGCAAGACAACCGTGTTGTTCATCGCCGCTTCCCCTGAGCTCCTGATATCCGCCATAAACGCCACATTCGGCTCACAGCTGGACGCATACACACAGCTGGGTGTGGACTAAAGCCAAACCCTTATaaatgtgcatacacacacacacacacacacacacacacacacacacaccaaaaatcTGTACTCTTATAGTGTTTTCCCACCTGGCCTCCGATGTCAATGATGGTTTTCTGTGATCGTTGTTGCCATGgtgtcaaaaacaaaaaaataagacGGAGTGGAAACGCAAACTAGGCCACTCCGGGGCTGTTAATTAAAAGTGTCTTTATCCTCAGACCACTTCATTATAgcttcattaatattaatatttcagctagtttatttttatatatatatatatatatgtatgtatgtgtatccGGAGCCAGTTAAAGTCCTAAAcgttttttttctatgtttgaTTACTCAGACGGTTTTGTAAAAGATTTGACATCATGTTCAGGCGATCGCTGTGATGAAACAACAGCAAATCCGGTGTAATGCATTCTATGGAAAAAAAGTAACGcgtattttttccccctttggtTATATGTATtccttttctgtattttttttttattttgttattgtacAGTCACTTAATAAACGTGTGATATGGAGTGAGGTAATGTTACATACTGACATTTCCACAGTCGAAGCAGTATtccattgtttttcatttttataatactGTCTAATTGATTTTACGGTGGAACTCAAAATATTCTTCAGTAAAACCCATCTGGACAACAAAC

Function

NR:

description
PREDICTED: septin-7 isoform X1

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0031105 septin complex cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K16944 SEPT7, CDC3; septin 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034297891.1 False 1305 mRNA 0.51 13 2630018 2647474
XM_034297892.1 False 1281 mRNA 0.51 12 2630018 2647452
XM_034297893.1 True 2184 mRNA 0.47 14 2627651 2647474

Neighbor

gene id symbol gene type direction distance location
si:dkey-256h2.1 LOC108256448 coding downstream 1236 2616424 ~ 2626415 (-)
LOC113532793 NA coding downstream 16339 2607702 ~ 2611312 (-)
mios mios,LOC107671474,LOC107592481,LOC107592123 coding downstream 46628 2568991 ~ 2581023 (-)
zmp:0000000881 NA coding downstream 211245 2411801 ~ 2416406 (-)
LOC113532929 NA coding downstream 218309 2405670 ~ 2409342 (-)
cthrc1b cthrc1b,LOC108256451,LOC107726655,LOC107592186,LOC107688280,LOC105891862 coding upstream 9428 2656902 ~ 2668209 (-)
csmd3a LOC108256161,LOC107688260,LOC107671459,LOC105891721 coding upstream 32863 2680337 ~ 2918894 (-)
LOC117595760 NA coding upstream 388920 3036394 ~ 3045887 (-)
eif3ha eif3h coding upstream 463968 3111442 ~ 3140099 (-)
rad21a LOC108256659,LOC108412369,LOC107711537,LOC107671466,LOC107726662,LOC107592120 coding upstream 493593 3141067 ~ 3150751 (-)
G325616 NA non-coding downstream 29072 2597279 ~ 2598579 (-)
G325373 NA non-coding downstream 227061 2400317 ~ 2400590 (-)
G325366 NA non-coding downstream 240093 2387309 ~ 2387558 (-)
G325343 NA non-coding downstream 254849 2348305 ~ 2372802 (-)
G325356 NA non-coding downstream 293000 2334452 ~ 2334651 (-)
G325774 LOC108256343,LOC108245987,LOC103040777,LOC108439298 non-coding upstream 528286 3175760 ~ 3240764 (-)
G325778 NA non-coding upstream 547369 3194843 ~ 3214451 (-)
G325779 NA non-coding upstream 551753 3199227 ~ 3201250 (-)
G325780 NA non-coding upstream 561732 3209206 ~ 3237328 (-)
G326133 NA non-coding upstream 1174431 3821905 ~ 3878517 (-)
G325145 mtmr11 other downstream 530216 2088259 ~ 2097435 (-)
LOC113533106 LOC108256308,LOC108256309,LOC108261853 other downstream 1059145 1557016 ~ 1568506 (-)
kif13a kif13a other downstream 1176651 1403264 ~ 1451000 (-)
G324748 NA other downstream 1256622 1370476 ~ 1371029 (-)
scap scap,LOC107600505,LOC107717374,LOC107668298,LOC107713836 other downstream 1285580 1294865 ~ 1342071 (-)
LOC113532533 LOC108256344 other upstream 582547 3230021 ~ 3251447 (-)
LOC113532799 rftn1 other upstream 672070 3319544 ~ 3404418 (-)
znf385d znf385d other upstream 1073215 3720689 ~ 3796368 (-)
vsig10l vsig10l other upstream 1310023 3957497 ~ 3966115 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other upstream 1661132 4308606 ~ 4347253 (-)

Expression


Co-expression Network