ccdc58 (ccdc58,LOC107733097,LOC107701664)


Basic Information

Item Value
gene id ccdc58
gene name ccdc58,LOC107733097,LOC107701664
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17305155 ~ 17309921 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034297896.1
CAATATTCTTTCACCAATATAATGCAGGCATTGTTTGGGCAGCTATGACCCTCACAGGTTTTGAGGACCCTTCAGTCCACCATGGCGGCGCCCGGTGGCACTCTGAATTGTGAGGACTTTTTAATGTTTCAGGAGGTGTTAAAAGCAATGCGGACCTTTGATGACAGGATTGTCCACGCTCTCAACACCACCGTGCCCACGGTGTCCTTCTCAGGAAAAGTGGATGCCACGCAGACCTGCAAAGAGCTCTACGAGTCTCTGATGGAGGCCCATATGAGTAGAGATAAAGCAATAAAGACATGTATTATAGAAACGTCAGAAGTTGTCGGGCGGTTACGTGAAGCGAGGGCGAAGGACAGCGACAACCTGTCAATCATCAAACAACTCAGGAAAGAACAAAACAAGTTAAAACTCATGCAGTCTGAACTGAACGTTGAAGAAGTCATCAATGATCGCAGTTTGAAGGTTTTCAATGAACGATGTCGAATCCACTACATCCCCCCTAAGATCAATTAAACCTCAGTGTCCTTTGGAGAGCTCTACAGTAAACACTGAGACGGCTGTGAATCACAACTGGAGTGACtttggatgctgctctggcagACCGCTATAAATCCCTCTCATTCTCACTGTTAGTCTGAACTCCtgtgtttctacagtaacatgAGACTTCTGCTCTTCATACAGCTGTTGTACAAAAAggatttttataaacatttttttttttccagtggcCAGCGTGTGTTCAGTTCTACTCTCTCTTTACAATTTACATTGCAACCTGAATTACAGGTGAGACGAAGTGAAACTGTGTGGATGTGGAGTTGGGTGgaaattaaatggaaaaaaaacacaaagacgGTACGTTTGATTGGGATCTTAAAGGAATAAAGTCGAAGTCGGACGCCGGCATGATAAGTAAAGGTATTGCAATCCTGGTCATGTTCTCTACAGATAGACCAGCTACAGTTAATCCCAGGCTTAAAGAACAGCACAATTTCTTATataacaagtaaggaataaaacactttcgggcatgctgttatagcaaaataatcaatgatgatgTGGTATGAAGTagcgttactgttaccatcctgaagttgtgACAGCAAACAATACAATTTACTCAAATAACACCTACATTGAAAACAGTGCTTTTCATtccacttttattatttaccttggcatttccaaaactagacaaaaaaaagaataaacagtTGGCATATTCCAACCTCCTTATTCCCAGTGAACTCCACCTTATCTGTGTTAAAAAGACAATGGAAACACATCAGTAGTTAAACATTATGGCAATTCATAAATACTTAGTtatgaataatgaaataaatattaatgaatatgaatattaagTTATTTATAAATGACTGATATTTATCATGGTTAGTTTGTTAGTCAGAAGAAGCCCGTTTCTTGTCAGTTCCATAACTAACACAGAATAAATGTGATCAATgacactaaataaatatataaattacatataGAATATAAATCCAAACTCAATCCCAAAtccctgtgtgtatgtgttatcaTAGCCATGAAAATTTTAAaccaaagaaaggaaatgttcaacATTCAGGATTCTACACTATTTCTCAGTTGCTATTTAAATTAAAGCagatgtgtgatattga

Function

symbol description
ccdc58 Located in mitochondrion. Orthologous to human MIX23 (mitochondrial matrix import factor 23).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034297896.1 True 1655 mRNA 0.38 5 17305155 17309921

Neighbor

gene id symbol gene type direction distance location
si:ch211-161h7.5 LOC108256129 coding downstream 23532 17277404 ~ 17281623 (-)
si:ch211-161h7.4 LOC108256371 coding downstream 29027 17266256 ~ 17276128 (-)
nktr nktr,LOC107670423 coding downstream 143948 17142461 ~ 17161207 (-)
ctdspla ctdspl,ctdspla,LOC107701658,LOC107584947 coding downstream 231513 17030860 ~ 17073642 (-)
vill vill coding downstream 276262 17015624 ~ 17028893 (-)
kpna1 kpna1,LOC107591240,LOC107754951,LOC107733038 coding upstream 6599 17316520 ~ 17329657 (-)
qtrt2 qtrt2 coding upstream 54720 17364641 ~ 17378007 (-)
zdhhc23b zdhhc23 coding upstream 80734 17390655 ~ 17397944 (-)
gramd1c gramd1c coding upstream 90439 17400360 ~ 17415956 (-)
pdx1 pdx1,LOC107580123 coding upstream 125152 17435073 ~ 17440510 (-)
G333525 NA non-coding downstream 3159 17285753 ~ 17301996 (-)
G333527 NA non-coding downstream 6709 17293375 ~ 17298446 (-)
G333470 NA non-coding downstream 218951 17085883 ~ 17086204 (-)
G333454 NA non-coding downstream 267643 17037167 ~ 17037512 (-)
G333452 NA non-coding downstream 274458 17030465 ~ 17030697 (-)
G333649 NA non-coding upstream 68375 17378296 ~ 17378572 (-)
G333650 ccdc191 non-coding upstream 70934 17380855 ~ 17381236 (-)
G333652 NA non-coding upstream 73821 17383742 ~ 17384023 (-)
G333653 ccdc191 non-coding upstream 75358 17385279 ~ 17385646 (-)
G333656 NA non-coding upstream 79533 17389454 ~ 17389741 (-)
vipr1b vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 other downstream 66039 17185524 ~ 17239116 (-)
zbtb47b zbtb47,znf652,LOC108256615 other downstream 165470 17116098 ~ 17139685 (-)
myd88 myd88 other downstream 415731 16885151 ~ 16889424 (-)
oxsr1b oxsr1,oxsr1b other downstream 425271 16829790 ~ 16879884 (-)
cpa6 cpa6,LOC106579545 other downstream 992239 16281271 ~ 16312916 (-)
LOC113541127 LOC108256571 other upstream 597663 17907584 ~ 17908812 (-)
c22h11orf65 c23h11orf65 other upstream 599403 17909324 ~ 17916556 (-)
zmp:0000000991 NA other upstream 606163 17916084 ~ 17931814 (-)
mybl1 mybl1,LOC107663687,LOC107590196 other upstream 1127593 18437514 ~ 18520205 (-)
pkia pkia,LOC107666628,LOC107705234 other upstream 1695577 19005498 ~ 19015855 (-)

Expression


Co-expression Network