rab11al (rab25,rab11al,rb11a,LOC107688222,LOC106580659,LOC107756900,LOC107671462)


Basic Information

Item Value
gene id rab11al
gene name rab25,rab11al,rb11a,LOC107688222,LOC106580659,LOC107756900,LOC107671462
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2364753 ~ 2372440 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034297943.1
AGGAGCCGCTCAAGGCACGAGCGCAGAAACCTTGGTGACGCAGGCAAACAAGTTACTCAGCAACGCTTTGATTTGAcgttaattaatattatttttactatatatatgtatatatatttttaagctCGCTTCTAGACACTGCAGAGTTAGTTTGTGAGCAGATCATCAGGTTTTGACATGCACTTCCTTGACTCACCCTGGCGGCTTTGACTACCTCGTATCTTCATGACAAGTTGCTTTGACGTTAgcttagccagctagctacagGTAGTATCACCTGACCATTTTACACACTATTTTTGTCAGTTAGCTGTCAGTAAGGAACCGCTCCGAAGCCATGACGGGTAGAGAAGAGGAATATGACTATCTTTTCAAAGTGGTGCTAATCGGAGACTCTGGAGTCGGGAAGAGCAATCTGCTGTCCCGCTTCACGCGCAACGAGTTCAACCTGGAGAGCAAGAGCACCATCGGTGTGGAGTTCGCCACTCGCAGCATTCATGTAGAGGGCAAGACGATCAAAGCCCAGATCTGGGACACTGCAGGCCAGGAGCGATACCGTGCCATCACCTCAGCatACTACCGCGGCGCTGTCGGTGCTCTTCTGGTGTACGACATCGCTAAGCACTTGACGTATGAAAACGCGGAGCGTTGGCTGAAGGAGCTGCAGGACCACGCCGACAGCAACATCGTCATCATGCTGGTGGGAAACAAGAGCGACCTGCGTCACCTACGAGCCGTGCCTACGGACGAGGCCAAGGCGTTCGCAGAGAAACACGGGCTTTCCTTCCTCGAAACTTCTGCTTTGGACTCCTCTAATGTAGAGCTCGCCTTTCAGACCATTCTCACAGCAATCTACCGCATCGTATCTCAGAGGCAAATTTCCGGACGTGGTGACACCGACTTCTCCCCCAACTCGAAAGTGGTGCCCATCACGGTGCAGCCCACACAGAGCTCGGGCAAGCAAAGCGCCTGCTGCCAGAACAACTAAGCAGCCGCCATAGCACAATGGGATTATGGGTAAAAACCGACATAAGGCTGGCCAAGGGGGGTTGCAAAGTTTGTTTGTCAAGCACATTAAGACCCCCCCTTTCCCCTTAATAACACATGCAGTAGGCTTTATCGGCTAAGCCCTAATTCAACAAGTTAAGCTTTAACATAGGGACCGAAATGAAACGAAagaattgttatttttttctccacagactGATTTAAagttctttatattttttacactaATTAGACACAGCACTAGGAGACTATTTATGTCTATGCACGTTTTGCTGGAGTAACAACTTATATCACCAACTAGTGCTTCGAATGTGCTCAAGCCTGTGCAGATGGGAAGAGGGTGATACAGTGAAATATGTCTATTTTAACCACTACACACTGGGTCTAGTTTTTATTAAACAGTCTCCTGGAGGAAGCGTCCTTTTTTCTCAGTGgatccttgaaaaaaaaaaaatcgacttCATCTCTGTCTGCTGCGTCTGCCTGTATTGTTGATTTGTAAGATGACTCAACTAGTGAAAAAACCCCTCTATTTATTTGATGCATTGAAATATCTGAGATGACACTGTTGCGATTACATCCTGATAgcctgtggatttttttaaacacattgttttatttagatGGTGTTTGCTGGTCTGTTTAGTCTGTTTATGATATTTAAGGGTTGATTAATTGTATTCTCTGCAGGGTGAGTAAAGCGTAAAGTGAACTAGTacagtgtctgtttttttttttttaagctattgAGTAACTATGTGCAGAAAAACAGGGGAAAAAGTTTTCCTGCTCTGTTTCCTTTTGGGTGAtgtggttttggttttttttttttggtcaaaaggTCTTATGCTTGTTTGAATGGATCAGCTTTGCTTTAGGGGCTTTTCTAGGTGCCGTTTTATCAGTGAGTCATTTAACCTGGACTAAGACGGAGGCATGAAACAGGAAGGCAGAGGCAGGCTCATGTGGACGGATTATGTTGCAGGACTGAGCAACAGCGGCGCGCTGAGCTGCTCACTGAGGAGTTTCTGGTGTACTGGAAGGGGCTTGTCTTACTGTAAGTGAAGTCCTCATTGCCCATCcctgtaatatactgtatgtaacctGAAGAAAGCCATACCCTCCGGGATCTCTGTTAATTGTGTCCCATCTCTCACTCTATTTCTCTGTTctccctccttttctttctgGTTGGAGTCATGGTCATGGAGAAAGGGAGTTCATGGTAGGTCAgattaaggaaaaaaagagctgtGGTGAAGGTCATTTATCTGTAGCTCTACTGCAACGTTCAGTTTTTGTCAATTAGGAAGCctcttttaattaaattactgGTCTGTGAAGAAGTTGATGTTTAGCAGTCATCACTGACTTTAACGCCATTCTCAATAAATGTAGATTTGAAGTGTC

Function

symbol description
rab11al Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in exocytosis. Predicted to be active in recycling endosome. Is expressed in several structures, including EVL; hatching gland; integument; periderm; and polster.
rab25 Enables myosin V binding activity. Involved in several processes, including positive regulation of cell population proliferation; positive regulation of epithelial cell migration; and pseudopodium organization. Located in cytoplasmic vesicle and pseudopodium.

NR:

description
PREDICTED: ras-related protein Rab-11A-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07904 RAB11A; Ras-related protein Rab-11A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034297943.1 True 2418 mRNA 0.45 5 2364753 2372440

Neighbor

gene id symbol gene type direction distance location
rab25b rab25b,LOC108256192,LOC108433873,LOC107756889,LOC107592474,LOC107688282,LOC107671436 coding upstream 1754 2358315 ~ 2362999 (+)
lamtor2 lamtor2 coding upstream 8537 2354104 ~ 2356216 (+)
ubqln4 ubqln4,LOC107726678,LOC107756885,LOC106580647 coding upstream 15234 2339453 ~ 2349519 (+)
LOC113532585 LOC108256181 coding upstream 31029 2329248 ~ 2333724 (+)
LOC113532738 LOC108256190,LOC108256173 coding upstream 40687 2318318 ~ 2324066 (+)
LOC113533066 thsd7a,LOC108256167 coding downstream 54304 2426744 ~ 2537060 (+)
LOC113532859 LOC108256203 coding downstream 170502 2542942 ~ 2549897 (+)
ica1 ica1,LOC107592479 coding downstream 181680 2554120 ~ 2563081 (+)
col28a1b LOC108256731 coding downstream 210779 2583219 ~ 2607036 (+)
slc25a32b slc25a32,LOC107688281,LOC107756894,LOC107726671 coding downstream 274341 2646781 ~ 2656914 (+)
G325247 NA non-coding upstream 29647 2334879 ~ 2335106 (+)
G325089 NA non-coding upstream 344365 2020184 ~ 2020388 (+)
G325076 apoa2 non-coding upstream 352772 1993256 ~ 2011981 (+)
LOC117595767 NA non-coding upstream 363749 2000137 ~ 2001004 (+)
G324947 NA non-coding upstream 432427 1927080 ~ 1932326 (+)
G325268 NA non-coding downstream 24233 2396673 ~ 2396887 (+)
G325271 NA non-coding downstream 28030 2400470 ~ 2400684 (+)
G325462 NA non-coding downstream 271601 2644041 ~ 2647583 (+)
G325697 NA non-coding downstream 699409 3071849 ~ 3072073 (+)
G325730 NA non-coding downstream 766872 3139312 ~ 3208962 (+)
LOC113533074 LOC108256184 other upstream 149343 2204846 ~ 2215410 (+)
bola1 bola1,LOC107592543 other upstream 220228 2142192 ~ 2144525 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other upstream 445043 1899626 ~ 1919710 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other upstream 1201139 1118268 ~ 1163614 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other upstream 1354530 956584 ~ 1010223 (+)
G325435 NA other downstream 193260 2565700 ~ 2569739 (+)
hamp NA other downstream 1638940 4011380 ~ 4013538 (+)
hmgn2 NA other downstream 2019080 4391520 ~ 4394784 (+)
LOC113532991 LOC108256125 other downstream 2026219 4398659 ~ 4434251 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other downstream 2548540 4920980 ~ 4923681 (+)

Expression


Co-expression Network